BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43650.1
Length=2355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935276 jgi|Araly1|935276|scaffold_403264.1 3103 0.0
Ahg484606 jgi|Araly1|484606|fgenesh2_kg.5__598__AT3G28230.1 372 8e-102
Ahg891313 jgi|Araly1|891313|Al_scaffold_0007_3299 132 1e-29
> Ahg935276 jgi|Araly1|935276|scaffold_403264.1
Length=2033
Score = 3103 bits (1680), Expect = 0.0
Identities = 1913/2023 (95%), Gaps = 26/2023 (1%)
Strand=Plus/Plus
Query 173 ACCTGCTCTGCAACACAACAATGGGGAAAAAAGGAGGGACTTTGAAGAGAAGTAGCAAAA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCTGCTCTGCAACACAACAATGGGGAAAAAAGGAGGGACTTTGAAGAGAAGTAGCAAAA 60
Query 233 GCAC-AAAAACTCGCAAAGATATCGTCGAAGACCAATACGACGACGAGATTGACGCCTTT 291
|||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GCACAAAAAAC-CGCAAAGATATCGTCGAAGACCAATACGATGACGAGATTGACGCCTTT 119
Query 292 CATAAACAGAGGGATATAGTTCCCTTGGATGTTAATGATGATACTGATGAATCGGATGAA 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CATAAACAGAGGGATATAGTTCCCTTGGATGTTAATGATGATACTGATGAATCGGATGAA 179
Query 352 GATGATGTGCAACCTGTATTTGATTTACAGGGTGTGGATGATGAAAGTGAGGAGGAT--- 408
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 180 GATGATGTGCAACCTGTTTTTGATTTAAAGGGTGTGGATGATGAAAGTGAGGAGGATGAA 239
Query 409 GAAGATACAGAAGACGAAGAGGAGGCCGAGAATGGACTTACTGCGAAAATGATTAGGCAG 468
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 240 GAAGATACAGAAGACGAAGAGGAGTCCGAGAATGGACTTACTGCCAAAATGATTAGGCAG 299
Query 469 AAGAAATATCTGAGGGCAAAGTTTGGTGATGGTGACGATGAAATGGCTGATGATGATAAG 528
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGAAATATCTAAGGGCAAAGTTTGGTGATGGTGACGATGAAATGGCTGATGATGATAAG 359
Query 529 GAT-AA-A-GAGGAAGACAAAAGGAGCACATGGGGCGGAAGAAGTGGCCTATACCATAGT 585
||| || | |||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GATAAAGATGAGGAAGAGAAAAGGAGCACATGGGGCGGAAGAAGTGGCTTATACCATAGT 419
Query 586 GGTGATAATGTGGATTTTGATATCCTATCAAGTGATGATGAAGACATTAAAGCGGAAGAA 645
||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 420 GGTGATAATGTGGATTTTGATCTCCAATCAAGTGATGATGAAGACCTTAAAGCGGAAGAA 479
Query 646 GAAGAGGTCATACGACTACGG-GCAGAACAACTTGGATCCATAACAGCAGCTGATGCTGG 704
|| ||||| ||| |||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 480 GAGGAGGTGATAAGACTACGGAG-AGAACAACTTGGATCCATTACAGCAGCTGATGCTGG 538
Query 705 GTTAGACGATGATAGTGAAGAAGATAGCGACAGAGAATTAACCATGGAGGAAATTTCTGA 764
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 539 GTTAGACGATGATAGTGAAGAAGAGAGTGACAGAGAATTAACCATGGAGGAAATTTCTGA 598
Query 765 CAAAGGTAAGCAGGCTACAAAATCCATCACAGATAAGAAAGAGAAGGGTGATAAGGATAC 824
|||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||| ||
Sbjct 599 CAAAGGAAAGCAGGCTACAAAATCTATCACAGATAAGAAAGAGAAGGATGACAAGGACAC 658
Query 825 ACATGTTGAAGAGATCAAGAAAGACATAAACTCTTTGTCAAAAGAAGAGCAAATGGATGT 884
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 659 ACATGTTGAAGAGATCAAGAAAGACATCAACTCTTTGTCAAAAGAAGAGCAAATGGATGT 718
Query 885 AGTATATAGTTCTGCTCCGGAAATAGTTGGTCTTTTGTCTGAGTTGAACGATGCAGTTGA 944
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 719 AGTATATAGTTCTGCTCCGGAAATAGTTGGTCTTTTGTCTGAGTTGAACTATGCAGTCGA 778
Query 945 AGAGCTTGAGAGTAAGATAAATCCTGTTATGAATAAGTTAAAGGAAGGAGAAATTTCGTT 1004
|||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 779 AGAGCTTGAGAGTAAGATAAATCCTGTTTTGAGTAAGTTAAAGGAAGGAGAACTTTCGTT 838
Query 1005 GAATGGTTTAGCAAGGTACCTGGAGGTTAAGCAGCTTCTGCTACTTACCTATTGCCAATC 1064
||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 GAATGGTGGAACAAGGTACCTGGAGGTTAAGCAGCTTCTGCTACTCACCTATTGCCAATC 898
Query 1065 TATAACATTTTATCTTCTACTCAAGTCTGAAGGGCAGCCCATCCGTGATCATCCGGTCCT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TATAACATTTTATCTTCTACTCAAGTCTGAAGGGCAGCCCATCCGTGATCATCCGGTCCT 958
Query 1125 TGCCCGTCTTGTCGAGATCAAATCTTTATTAGATAAGATCAAAGAACTTGATGAAGAGCT 1184
|||||||||||| || |||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 959 TGCCCGTCTTGTAGACATCAAATCTTTACTAGATAAGATCAAAGAACTTGATGGAGAGCT 1018
Query 1185 TCCCCCTGGATTTGAAGAGTCCCTAGCAAGAAGTATTGCTAATGGAGCAGTGCAAAAGGT 1244
||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1019 TCCCCCTGGGTTTGAAGAGTCCCTAGCGAGAAGTATTGCTAATGGAACAGTGCAAAAGGT 1078
Query 1245 GGTTAAAGAAGATCAGCTCACTTCACCTGTTTCTGATTCAGTAGATAGAATCACACAAGA 1304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1079 GGTTAAAGAAGATCAGCTCACTTCACCTGTTTCTGATTCAGTAGATAGAATCACGCAAGA 1138
Query 1305 CACAGCCAAGCCGATGAAAATTGA-CAACGCaagagaagaaaagaagaaaaaaggagaga 1363
||||||| |||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1139 CACAGCCGAGCCAATGAAAATTGATGGA-GCAAGAGAAGAAAAGAAGAAAAAAGGAGAGA 1197
Query 1364 aaCGCAAGCA-C--CAGAATGATCTGGTTGATGTGCAAAGTGAGGAGATGTTAAAACTTC 1420
|||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1198 AACGCAAGCACCAGCAGAATGATCAGGTTGATGTGCAAAGTGAGGAAATGTTAAAACTTC 1257
Query 1421 GAGCAGCTCTAGAGGGAAAACTTAGAACCAATGGAGTCCTTGGTTCTACTGTTTCAAAGT 1480
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1258 GAGCAGCTCTAGAGGGAAAGCTTAGAAGCAATGGAGTCCTTGGTTCTACTGTTTCAAAGT 1317
Query 1481 CTGATAAAGCTCAAAAACGCCAGAAATTAGCTAATAGGAAGCTAGAGACATTCGATGATT 1540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CTGATAAAGCTCAGAAACGCCAGAAATTAGCTAATAGGAAGCTAGAGACATTCGATGATT 1377
Query 1541 ATGTGGATGATGCAGACAATAGCACACATAATGTAACAGCTGATAAGCTCACCAAGCTTG 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATGTGGATGATGCAGACAATAGCACACATAATGTAACAGCTGATAAGCTCACCAAGCTTG 1437
Query 1601 TGTCCACCAAACGGAAGCCCAAGACTATTTCTGGAGATGATGATTTACCGCAAAGAGATG 1660
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct 1438 TGTCCACCAAACGGAAGCCCAAGACTGTTTCTGGAGATGATGATTTACCACAAAGGGATG 1497
Query 1661 ATATTGGAGAACGGCGTAGAAAGTTTGAGCTCAGAGTTTTGGCTGGAGCTGGTGTGAAGT 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ATATTGGAGAACGGCGTAGAAAGTTTGAGCTCAGAGTTTTGGCTGGAGCTGGTGTGAAGT 1557
Query 1721 CATCAGAGGGAGATGGCAGGAATAAAAATGGGGCATTTGCATCAGATGATGAGGATGATA 1780
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1558 CATCAGAGGGAGATGGCAGGAATGAAAATGGGGCATTTGCATCAGATGATGACAATGATA 1617
Query 1781 ACGATGGTGATAACAATGACATGGTTGATAATGATGGTGAATCAGAAG----A-----TG 1831
|||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1618 TCGATGGTGGTAACAATGACATGGTTGATAATGATGGTGAATCAGAAGGCTCAGAAGATG 1677
Query 1832 AATTTTACAAACAAGTGAAACAGAAACAACAAGCTAAACGAGCTGCCAAAGCAGAGATCT 1891
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1678 AATTTTACAAACAAGTGAAACAGAAACAAGAAGCTAAACGAGCTGCTAAAGCAGAGATCT 1737
Query 1892 ATTCAAGAAAACCTCATTTGATGCCGTCATCGCCAGAACACGTGGATGGAAAACGACACA 1951
||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||| |
Sbjct 1738 ATTCAAGGAAACCACATTTGATCCCGTCATCGCCAGAACGCGTGGATGGAAAACGACATA 1797
Query 1952 TTTCAAATCAGATGGTGAGTAACAGAGGATTGACCCGGCAACGCAACAGGGACCTCAAAA 2011
||||||||||||| |||||||||||||||||||||| || ||||||| |||||| ||||
Sbjct 1798 TTTCAAATCAGATTATGAGTAACAGAGGATTGACCCGACATCGCAACAAGGACCTTAAAA 1857
Query 2012 ACCCGAGAAAGAAGTACCGGAAAAATTACGAGAAAAAAGTCACTAGA-CGCAAAGGACAG 2070
|||||||||||||||| ||||| || ||||||||||||||| | || ||||||||||||
Sbjct 1858 ACCCGAGAAAGAAGTATCGGAATAAGCACGAGAAAAAAGTCATT-GATCGCAAAGGACAG 1916
Query 2071 GTCAGAGATATCAGGAAACAAACGGGTCCATATGCAGGAGAAGCCCGAGGTATCAATCCC 2130
|||||||||||| |||||||||| ||||||||| |||||||| | || ||||||||||||
Sbjct 1917 GTCAGAGATATCCGGAAACAAACAGGTCCATATTCAGGAGAAACTCGCGGTATCAATCCC 1976
Query 2131 AACACAAGCCGGAGCATCCGAATGTAGAACTAACCTCCTCTTC 2173
||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1977 AACACAAGCAGGAGCATCCGAATCAAGAACTAACCTCCTCTTC 2019
> Ahg484606 jgi|Araly1|484606|fgenesh2_kg.5__598__AT3G28230.1
Length=576
Score = 372 bits (201), Expect = 8e-102
Identities = 299/346 (86%), Gaps = 8/346 (2%)
Strand=Plus/Plus
Query 1822 TCAGAAGATGAATTTTACAAACAAGTGAAACAGAAACAACAAGCTAAACGAGCTGCCAAA 1881
|||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||
Sbjct 235 TCAGAAGATGAATTTTACAAACAAGTGAAACAAAAACAAGAAGCTAAAAGAGCTGCCAAA 294
Query 1882 GCAGAGATCTATTCAAGAAAACCTCATTTGATGCCGTCATCGCCAGAACACGTGGATGGA 1941
||||||||||||||||| ||||| |||||||| |||||||||||||||| || | ||||
Sbjct 295 GCAGAGATCTATTCAAGGAAACCACATTTGATCCCGTCATCGCCAGAACGTGTAGTTGGA 354
Query 1942 AAACGACACATTTCAAATCAGATGG-TGAGTAACAGAGGATTGACCCGGCAACGCAACAG 2000
||||| |||||||||||||| | | |||||||||||||||||||| ||||||| |
Sbjct 355 AAACGTTTGATTTCAAATCAGATAGCT-AGTAACAGAGGATTGACCCGTAAACGCAATAA 413
Query 2001 GGACC-TCAAAAACCCGAGAAAGAAGTACCGGAAAAATTACGAGAAAAAAGTCACTAGA- 2058
||||| | ||||||||||||||||| || ||| | || || |||||||||||| || |
Sbjct 414 GGACCAT-AAAAACCCGAGAAAGAACTATCGGGATAAGCACAAGAAAAAAGTCATTA-AT 471
Query 2059 CGCAAAGGACAGGTCAGAGATA-TCAGGAAACAAACGGGTCCATATGCAGGAGAAGCCCG 2117
| || |||||| |||||| || ||||||||| || ||||||||||||||||||| | ||
Sbjct 472 CACAGAGGACAAGTCAGAT-TAATCAGGAAACCAATGGGTCCATATGCAGGAGAAACTCG 530
Query 2118 AGGTATCAATCCCAACACAAGCCGGAGCATCCGAATGTAGAACTAA 2163
||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 531 CGGTATCAATCCCAACACAAGCCGGAGCATTCGAATCAAGAACTAA 576
> Ahg891313 jgi|Araly1|891313|Al_scaffold_0007_3299
Length=255
Score = 132 bits (71), Expect = 1e-29
Identities = 109/126 (87%), Gaps = 8/126 (6%)
Strand=Plus/Plus
Query 1961 AGATGGTGAGTAACAGAGGATTGACCC-GGCAACGCAACAGGGACCTCAAAAACCCGAGA 2019
||||||| | | ||| ||||||||||| |||||||||||| ||| || ||||||||||||
Sbjct 126 AGATGGT-A-T-ACATAGGATTGACCCTGGCAACGCAACAAGGATCTTAAAAACCCGAGA 182
Query 2020 AAGAAGTACCGGAAAAAT----TACGAGAAAAAAGTCACTAGACGCAAAGGACAGGTCAG 2075
||||||||||||||||| |||||||||||||||| ||| |||||||||| |||||
Sbjct 183 AAGAAGTACCGGAAAAAGCACGTACGAGAAAAAAGTCAATAGTTGCAAAGGACATGTCAG 242
Query 2076 AGATAT 2081
||||||
Sbjct 243 AGATAT 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88712180605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5