BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43660.2

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483478 jgi|Araly1|483478|fgenesh2_kg.4__2538__AT2G43660.2         627    3e-179
  Ahg333379 jgi|Araly1|333379|fgenesh1_pm.C_scaffold_677000001         268    2e-71 


> Ahg483478 jgi|Araly1|483478|fgenesh2_kg.4__2538__AT2G43660.2
Length=462

 Score =  627 bits (339),  Expect = 3e-179
 Identities = 425/465 (91%), Gaps = 12/465 (3%)
 Strand=Plus/Plus

Query  1    CAAAGACATCAAACAAAAACAAATATGCCTAAAGCACAAATATGGTTTCCTTTCATCATC  60
            ||||||||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||
Sbjct  1    CAAAGACATCAAACAAAAACAAACATGACTAAAGCACAAATATGTTTTTCTTTCATCATC  60

Query  61   TTGTTATGCATCTCATCAGTAGGAAGTTTCATGAGAGTCAATGCACAAGCACCGGGCCAA  120
            ||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct  61   TTGTTATACATCTCATCAGTAGGAAATTTCATGAGAGTCAATGCACAGGCACCGGGCCAA  120

Query  121  GGGAGTTGGTGTGTGGCTAAGCCTGGCACGCCGATCAAACAACTTGTAAAGAACTTAAAC  180
            |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct  121  GGGAGTTGGTGTGTGGCTAAGCCTGGCACGCCGATCGAACAACTTGTAAAAAACTTAAAC  180

Query  181  AACGTGTGTTCGAATTC-G-AGTGTCCATTGTGAGGTTGTATCGGAAGGAGGTGCCTGTT  238
             |||||||||||||||| | | | || ||||||||||||| ||| |||||||| | ||||
Sbjct  181  TACGTGTGTTCGAATTCAGGAAT-TC-ATTGTGAGGTTGTGTCGAAAGGAGGTACATGTT  238

Query  239  ATGATCCGATTAATCTCTATAATTCAGCTTCTGTCGTCATGAATCTTTATTACCAAAATC  298
            ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  239  ATGATCCAATTAATCTCTATAATTCAGCTTCTGTCGCCATGAATCTTTATTACCAAAATC  298

Query  299  AAGGAAGACAGTATTCGAAATGCGATTTCGAAGGCTCTGGTATAATTAGCGTAACTGATC  358
            |||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct  299  AAGGAAGACACTATTCAAAATGCGATTTCGAAGGCTCTGGTATAATTACCGTAACTGATC  358

Query  359  CTAGT---T---ATGAATGTTGCATATATGAATTTGCTAAGTAA-GCATAGAAAGCTTCG  411
            |||||   |   ||| |||||||||||||||||||  ||||||| |||||||||||||||
Sbjct  359  CTAGTGAGTTTTATGGATGTTGCATATATGAATTTTATAAGTAAAGCATAGAAAGCTTCG  418

Query  412  CGAATGTGTCTGTTCCAAACTTTGAATAATTAATGGTTCAACTTT  456
            | ||||| | |||| |||| ||||||||||||||||||||| |||
Sbjct  419  CCAATGTATTTGTTACAAAATTTGAATAATTAATGGTTCAA-TTT  462


> Ahg333379 jgi|Araly1|333379|fgenesh1_pm.C_scaffold_677000001
Length=273

 Score =  268 bits (145),  Expect = 2e-71
 Identities = 171/184 (93%), Gaps = 0/184 (0%)
 Strand=Plus/Plus

Query  213  GGTTGTATCGGAAGGAGGTGCCTGTTATGATCCGATTAATCTCTATAATTCAGCTTCTGT  272
            |||||| ||| |||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct  90   GGTTGTGTCGAAAGGAGGTACATGTTATGATCCAATTAATCTCTATAATTCAGCTTCTGT  149

Query  273  CGTCATGAATCTTTATTACCAAAATCAAGGAAGACAGTATTCGAAATGCGATTTCGAAGG  332
            || ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  150  CGCCATGAATCTTTATTACCAAAATCAAGGAAGACACTATTCAAAATGCGATTTCGAAGG  209

Query  333  CTCTGGTATAATTAGCGTAACTGATCCTAGTTATGAATGTTGCATATATGAATTTGCTAA  392
            |||||||||||||| ||||||||||||||||| || |||||||||||||||||||  |||
Sbjct  210  CTCTGGTATAATTACCGTAACTGATCCTAGTTGTGGATGTTGCATATATGAATTTTATAA  269

Query  393  GTAA  396
            ||||
Sbjct  270  GTAA  273



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16750303571


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5