BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43670.1

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483480 jgi|Araly1|483480|fgenesh2_kg.4__2540__AT2G43670.1         675    0.0  


> Ahg483480 jgi|Araly1|483480|fgenesh2_kg.4__2540__AT2G43670.1
Length=461

 Score =  675 bits (365),  Expect = 0.0
 Identities = 412/434 (95%), Gaps = 5/434 (1%)
 Strand=Plus/Plus

Query  15   TCAAACATGGCTAAAGCACAAATATGTCTTTGTTTCATCATTTTCTTATACCTCTGGCCA  74
            |||||||||||||||||||||||||||||||||||||||||  |||||||||| ||| ||
Sbjct  1    TCAAACATGGCTAAAGCACAAATATGTCTTTGTTTCATCATCATCTTATACCTTTGGTCA  60

Query  75   GAAGGAAATTTCATCAAAGTCA-CCAAGGCAGATCGCTCGGCCGGAGATTGGTGCGTTGC  133
            ||||||||| |||| ||||| | |||||||||||||||   ||||||||||||| |||||
Sbjct  61   GAAGGAAATCTCATGAAAGT-AGCCAAGGCAGATCGCT---CCGGAGATTGGTGTGTTGC  116

Query  134  TAAACCTTCTACGGATAACGAAAGGCTTCAAGAAAACATAAACTTCGCGTGTTCGAAAAT  193
            |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  117  TAAACCTTCTACGGCTAACGAAAGGCTTCAAGAAAACATAAACTTTGCGTGTTCGAAAAT  176

Query  194  CGATTGTCAGATTATCTCGGAAGGAGGTGCATGTTATTTACCAGATAGTATCATTAGTCG  253
             |||||||||||||| | ||||||||||||||||||||||||||||| | ||||||||||
Sbjct  177  TGATTGTCAGATTATATTGGAAGGAGGTGCATGTTATTTACCAGATAATCTCATTAGTCG  236

Query  254  TGCTTCTGTTGCCATGAATCTTTATTACCAAGCTCAAGGAAGACATTTTTGGAACTGCAA  313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  TGCTTCTGTTGCCATGAATCTTTATTACCAAGCTCAAGGAAGACATTTTTGGAACTGCAA  296

Query  314  TTTTGAAGGCTCTGGTCTCATCGGCATAACTGATCCTAGCTATGGAAGTTGCATTTATCA  373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TTTTGAAGGCTCTGGTCTCATCGGCATAACTGATCCTAGCTATGGAAGTTGCATTTATCA  356

Query  374  ATTTCGTAAGTAAAACATATCAAGGTTCGATCTTGTTGCAAGAAGTTAGAGGACTGTATC  433
            |||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct  357  ATTTCGTAAGTAAAACATATCAAGCTTCGATCTTGCTGCAAGAAGATAGAGGACTGTATC  416

Query  434  TGAAATTTCCTATT  447
            ||||||||||||||
Sbjct  417  TGAAATTTCCTATT  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20260617759


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5