BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43680.1
Length=2505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935279 jgi|Araly1|935279|scaffold_403267.1 2115 0.0
Ahg486435 jgi|Araly1|486435|fgenesh2_kg.5__2427__AT3G59690.1 265 1e-69
> Ahg935279 jgi|Araly1|935279|scaffold_403267.1
Length=2092
Score = 2115 bits (1145), Expect = 0.0
Identities = 1330/1417 (94%), Gaps = 22/1417 (2%)
Strand=Plus/Plus
Query 885 TCTTCAA-AGCCGCCTTCTCCAAGAGCAGAGCCACCAACATTGGACACTCCAAGACCTCC 943
||| ||| ||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 678 TCTCCAAGAGCTG-CTTCTCCAAGGGCAGAGCCACCAACATTGGACACTCCAAGACCTCC 736
Query 944 CTCTCCAAGAGCTGCTTCTCTAAGAGCAGACCCACCAAGATTGGATGCTGCACGACCCAC 1003
|| |||| | |||| |||| ||| ||||||||||||||||| |||||| || |||||||
Sbjct 737 TTCCCCAAAAACTGCCTCTCCAAGGGCAGACCCACCAAGATTCGATGCTCCAAGACCCAC 796
Query 1004 CACGCCTAGGCCTCCTTCTCCACTAGCAGACGCACCAAGATTGGATGCTCCACGACCCAC 1063
|||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||| ||
Sbjct 797 CACGCCTAAGCCTCCTTCTCCAAGAGCAGACACACCAAGATTGGATGCTCCAAGACCTAC 856
Query 1064 TACGCCTAAGCCGCCTTCTCCAAGATCAGACCCGCCAAGATTGGATGCTCCAAGACCCAC 1123
||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct 857 CACGCCTAAGCCTCCTTCTCCAAGAGCAGACGCACCAAGATTGGATGCTCCAAGACCCAC 916
Query 1124 TACGCCTAAGCCCCCTTCTCCAAGATCGGTTTCTCCTAGGGCTGTGCAGCGGCGGGAGAT 1183
||||||||||||||||||||||||| ||||||| ||||||| ||||||||| || ||| |
Sbjct 917 TACGCCTAAGCCCCCTTCTCCAAGAGCGGTTTCGCCTAGGGGTGTGCAGCGACGAGAGGT 976
Query 1184 TGTTTATAGACCAGAGCCAACGCTTCCGGTCCAACATGCTTCTGCAACAAAGATTCAAGG 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TGTTTATAGACCAGAGCCAACGCTTCCGGTCCAACATGCTTCTGCAACAAAGATTCAAGG 1036
Query 1244 AGCTTTCAGAGGTTACATGGCAAGGAAGAGTTTCAGAGCTCTCAAAGGTCTAGTCAGACT 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGCTTTCAGAGGTTACATGGCAAGGAAGAGTTTCAGAGCTCTCAAAGGTCTAGTCAGACT 1096
Query 1304 TCAAGGTGTGGTGAGAGGATACAGCGTGAAGCGGCAGACGATAAATGCAATGAAGTACAT 1363
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1097 TCAAGGTGTGGTGAGAGGATACAGTGTGAAGCGGCAGACGATAAATGCAATGAAGTACAT 1156
Query 1364 GCAGCAAGTGGTCCGTGTTCAATCCCAAATCCAGTCACGTCGCATCAAAATGTTGGAAAA 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 GCAGCAAGTGGTCCGTGTTCAATCCCAAATCCAGTCACGTCGCATCAAAATGTTGGAAAA 1216
Query 1424 CCAAGCCCAGGTAGAGAAAGATGAAGCCAAATGGGCTGCGTCTGAAGCTGGTAATGATAA 1483
|||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 1217 CCAAGCTCAGGTGGAGAAAGATGAAGCCAAATGGGGTGCATCTGAAGCTGGTAACGATAA 1276
Query 1484 TTGGGATGACAGTGTGCTGACAAAAGAGGAAAGGGATTCAAGATCACAAAGAAAGACTGA 1543
||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||
Sbjct 1277 TTGGGATGACAGTGTGCTGACAAAAGAAGAAAGGGATGCAAGATCACAGAGAAAGACTGA 1336
Query 1544 CGCAATCATCAAGAGAGAAAGATCCATGGCCTATGCATATTCTCGCAAGTTGTGGAAGAA 1603
||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1337 CGCGATCATCAAGAGAGAAAGATCCATGGCTTATGCATATTCTCGCAAGCTGTGGAAGAA 1396
Query 1604 CAGTCCTAAGTCTACTCAGGACAATCGTTCTT----T-----CCCTCAATGGTGGAACTG 1654
|||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1397 CAGTCCCAAGTCTACTCAGGACAATCGTTCTTCAGGTGGGTTCCCTCAATGGTGGAACTG 1456
Query 1655 GGTGGACCGGCAGAATCCTCTTGCTAGTCCTGCACCGAGCTATAGCCAACCACAAAGAGA 1714
|| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1457 GGCGGACCGGCAGCATCCTCTTGCTAGTCCTGCACCGAGCTATAGCCAACCACAGAGAGA 1516
Query 1715 TTTCAGGCTAACACCATCAAGACTGTGCCCAAGTCCTCTGTCTCAGTCAAGCAAACAACA 1774
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1517 CTTCAGGCTAACACCATCAAGACTGTGCCCAAGTCCGCTGTCTCAGTCAAGCAAACAACA 1576
Query 1775 CCATATCAGGCTTGACAACCACTTTGACACTTCAACACCCAGATCGTCAAGATCCACTTT 1834
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1577 CCATATCAGGCTTGACAACCACTTTGACACTTCCACACCCAGATCGTCGAGATCTACTTT 1636
Query 1835 TCACACTCCCTCCAGACCCATCCACACAGGGACATCAAGATACTCAAGAGGAAGACTAAG 1894
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1637 TCACACTCCATCCAGACCCATCCACACAGGGACATCAAGATACTCGAGAGGAAGACTAAG 1696
Query 1895 AGGTCAAGATTCTCCTTTCAAGGATGATGATAGCCTCACAAGCTGCCCTCCATTCCCTAG 1954
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1697 AGGTCAAGATTCTCCTTTCAAGGATGATGACAGCCTCACAAGCTGCCCTCCATTCCCGAG 1756
Query 1955 CTACATGGCTCCAACAGTCTCTGCCAAAG-CAAAAGTTAGACCAAACAGCAATCCAAAGG 2013
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1757 CTACATGGCTCCAACAGTCTCTGC-AAAGGCAAAAGTTAGACCAAACAGCAATCCAAAGG 1815
Query 2014 AGAGAGTGATGGGTACACCAGTCAGCGAGAAGAGGAGAATGTCGTATCCCCCCACGCAA- 2072
||||||||||||||||||| || |||||||||||||||||||||| ||| |||| ||||
Sbjct 1816 AGAGAGTGATGGGTACACCGGTAAGCGAGAAGAGGAGAATGTCGTTTCCTCCCATGCAAC 1875
Query 2073 --G------ATACGTTTAGATGGAACAAAGGGTCATTGGTCATGAGCAACAGCAGCAGCC 2124
| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1876 AAGGTCTTGATACGTTTAGATGGAACAAAGGGTCATTGCTCATGAGCAACAGCAGCAGCC 1935
Query 2125 ACAGAGGTCCTGGTTCACCTGGAGGTGTGGTTCTTGAGAAGCACAAGACACTTAAATCAG 2184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1936 ACAGAGGTCCTGGGTCACCTGGAGGTGTGGTTCTTGAGAAGCACAAGACACTTAAGTCAG 1995
Query 2185 TAGGAAATTTGAGCATTGGTTCCACTGCCTCCATGGCAACAACAGTTGGGAGAAAGGAat 2244
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1996 TAGGAAATTTGAGTATTGGTTCCACTGCCTCGATGGCAACAACAGTTGGGAGAAAGGAAT 2055
Query 2245 ttaacagatttgtgtgatttcttttgatttgaacatt 2281
|||||||||||||||||||||||||||||||||||||
Sbjct 2056 TTAACAGATTTGTGTGATTTCTTTTGATTTGAACATT 2092
Score = 1014 bits (549), Expect = 0.0
Identities = 810/927 (87%), Gaps = 53/927 (6%)
Strand=Plus/Plus
Query 229 GTAAGGAAAGTGATGTTGGCAA-AATGGTGAAGAAAGGAAGTTGGTTTTCTGCTATCAAA 287
||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAAGGAAAGTAATGTTGG-AATAATGGTGAAGAAAGGAAGTTGGTTTTCTGCTATCAAA 59
Query 288 AGGGTTTTTACTCCACATTCCAAAGAGAAGCTAGCCAATCAGGAACCagagagaaagagt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGGGTTTTTACTCCACATTCCAAAGAGAAGCTAGCCAATCAGGAACCAGAGAGAAAGAGT 119
Query 348 ggcaaagaaaagaagaagaaagGTTTTGGGAAGCTAAGGCATGGCGAGACCAATTCATTT 407
| |||||||||| |||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 120 GTAAAAGAAAAGAGGAAGAAGGGGTTTGGGAAGCTAAGGCATGGAGAGACCAATTCATTT 179
Query 408 CTTCCCATCTTCAGAGAGCCTAGTAGTATCGAAAAGATCTTGGGCGAGGCTGAGAGAGAT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTTCCCATCTTCAGAGAGCCTAGTAGTATCGAAAAGATCTTGGGCGAGGCTGAGAGAGAT 239
Query 468 CACAATCTTGTCTTCAGGCCTCCTACTCCTGATCGACCAAATCCATATTCAGCCTCTCCT 527
||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 240 CACAATCTTGTTTTCAGGCCTCCTACTCCTGATCGATCAAATCCATTTTCAGCCTCTCCT 299
Query 528 CCTCCGAGGCCTGCTTCTCCTCGGGTTGCTTC-CC-CAAGACCAACTTCTCCAAGAGTTG 585
||| ||| | |||| || |||||| || | | | |||| || | | |
Sbjct 300 CCT------CCT-C--CTCCAAGGCCTGCTTCTCCTCGGGTTC--CTTC-CCCA-A---G 343
Query 586 CCTCACCACGAGTCCCTTCTCCAAGAGCTGAAGT-TCCAAGAACC-CTTTCACCAAAGCC 643
|||| | |||||||||||| || | ||| || || | ||| ||||||||
Sbjct 344 ----ACCA--A----CTTCTCCAAGAGTTG-CCTCACCACGAGCCGC-TTCTCCAAAGCC 391
Query 644 TCCTTCTCCAAGAGCTGAAGTTCCAAGATCCCTTTCACCAAAGCCTCCTTCTCCAAGAGC 703
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 392 TCCTTCTCCAAGAGCTGAAGTTCCAAGATCCCTTTCGCCAAAGCCTCCTTCTCCAAGAGC 451
Query 704 TGACCTTCCAAGATCACTTTCGCCAAAGCCCTTTGATCGATCGAAGCCATCATCAGCCTC 763
||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 452 TGACCTTCCAAGATCACTTTCGCCAAA-------G--C---CGAAGCCATCATCAGCCTC 499
Query 764 TGCTAATGCCCCTCCTACTCTTAGGCCTGCTTCTACTCGAGTTCCTTCTCAGAGAATTAC 823
||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TGCCAATG---CTCCTCCTCTTAGGCCTGCTTCTACTCGAGTTCCTTCTCAGAGAATTAC 556
Query 824 ACCTCACAGTGTTCCTTCTCCAAGACCAAGTTCACCAAGAGGTGCCTCCCCACAAGCCAT 883
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 557 CCCTCCCAGTGTTCCTTCTCCAAGACCAAGTTCACCAAGAGGTGCATCCCCACAAGCCGT 616
Query 884 CTCTTCAAAGCCGCCTTCTCCAAGAGCAGAGCCACCAACATTGGACACTCCAAGACCTCC 943
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 617 CTCTTCAAAGCCGCCTTCTCCAAGAGCTGAGCCACCAACATTGGACACTCCAAGACCTCC 676
Query 944 CTCTCCAAGAGCTGCTTCTCTAAGAGCAGACCCACCAAGATTGGATGCTGCACGACCCAC 1003
||||||||||||||||||| ||| ||||| ||||||| |||||| || || |||| |
Sbjct 677 TTCTCCAAGAGCTGCTTCTCCAAGGGCAGAGCCACCAACATTGGACACTCCAAGACCT-C 735
Query 1004 CA-CGCCTAGGCCT-CCTTCTCCACTAGCAGACGCACCAAGATTGGATGCTCCACGACCC 1061
| | || | || ||| ||||| |||||| |||||||||| ||||||||| |||||
Sbjct 736 CTTCCCCAAAAACTGCCT-CTCCAAGGGCAGACCCACCAAGATTCGATGCTCCAAGACCC 794
Query 1062 ACTACGCCTAAGCCGCCTTCTCCAAGATCAGACCCGCCAAGATTGGATGCTCCAAGACCC 1121
|| ||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 795 ACCACGCCTAAGCCTCCTTCTCCAAGAGCAGACACACCAAGATTGGATGCTCCAAGACCT 854
Query 1122 ACTACGCCTAAGCCCCCTTCTCCAAGA 1148
|| ||||||||||| ||||||||||||
Sbjct 855 ACCACGCCTAAGCCTCCTTCTCCAAGA 881
Score = 217 bits (117), Expect = 4e-55
Identities = 170/195 (87%), Gaps = 5/195 (3%)
Strand=Plus/Plus
Query 896 GCCTTCTCCAAGAGCAGAGCCACCAACATTGGACACTCCAAGACCTC-CCTCTCC-AAGA 953
||| |||||||| ||||| ||||||| ||| || |||||||||| | || | || |||
Sbjct 750 GCC-TCTCCAAGGGCAGACCCACCAAGATTCGATGCTCCAAGACC-CACCACGCCTAAG- 806
Query 954 GCTGCTTCTCTAAGAGCAGACCCACCAAGATTGGATGCTGCACGACCCACCACGCCTAGG 1013
|| |||||| |||||||||| ||||||||||||||||| || |||| |||||||||| |
Sbjct 807 CCTCCTTCTCCAAGAGCAGACACACCAAGATTGGATGCTCCAAGACCTACCACGCCTAAG 866
Query 1014 CCTCCTTCTCCACTAGCAGACGCACCAAGATTGGATGCTCCACGACCCACTACGCCTAAG 1073
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 867 CCTCCTTCTCCAAGAGCAGACGCACCAAGATTGGATGCTCCAAGACCCACTACGCCTAAG 926
Query 1074 CCGCCTTCTCCAAGA 1088
|| ||||||||||||
Sbjct 927 CCCCCTTCTCCAAGA 941
> Ahg486435 jgi|Araly1|486435|fgenesh2_kg.5__2427__AT3G59690.1
Length=1984
Score = 265 bits (143), Expect = 1e-69
Identities = 452/594 (76%), Gaps = 50/594 (8%)
Strand=Plus/Plus
Query 1716 TTCAGGCTAACACCATCAAGACTGTGCCCAAGTCCTCTGTCTCAGTCAAGCAAACAACAC 1775
||||||||||||||| || ||| | ||||||| |||| | |||| || |||| ||| ||
Sbjct 1209 TTCAGGCTAACACCAACACGACCGAGCCCAAGCCCTCAGCCTCAATCTAGCAGCCAAAAC 1268
Query 1776 CATATCAGGCTTGACAACCACTTT-GACACTTCAACACCCAGA-TCGTCAAGATCCAC-T 1832
||| ||||||| |||| || ||| |||||||| ||||||| | || |||| |||||| |
Sbjct 1269 CATTTCAGGCTCAACAA-CAGTTTCGACACTTCCACACCCA-ATTCATCAAAATCCACAT 1326
Query 1833 T--TT-C-ACA-CT---CCC--TC-CAGACC-CATCCACACAG--GGA-C--ATCAAGAT 1875
| || | || || ||| || || || || ||| |||| | | | |||||||
Sbjct 1327 TCGTTACTCCATCTAGACCCATTCACACTCCGCAACCATACAGTAGCAGCGTCTCAAGAT 1386
Query 1876 ACTCAAGAGGAAGACTAAGAG---GTCAAGATTCTCCTTTCAAGGATGATGATAGCCTCA 1932
||||| ||||| || ||||| |||||||||||||| || ||||||||||||||||
Sbjct 1387 ACTCACGAGGAGGAGGAAGAGCCACACAAGATTCTCCTTTTAAAGATGATGATAGCCTCA 1446
Query 1933 CAAGCTGCCCTCCATTC-C--CT--A-GCTACATGGCTCCAACAGTCTCTGCCAAAGCAA 1986
||||||||||||||||| | || | |||||||||||||||||||||| || |||||||
Sbjct 1447 CAAGCTGCCCTCCATTCTCAGCTCCAAGCTACATGGCTCCAACAGTCTCAGCTAAAGCAA 1506
Query 1987 AAGTTAGACCAAACAGCAATCCAAAGGAGAGAGTG-ATGGGTACACCAGTCAGCGAGAAG 2045
|| | ||| ||||||| |||| |||||||||| || | | |||||| |||||| | ||
Sbjct 1507 AACTAAGAGCAAACAGTAATCTAAAGGAGAGAATGGACCG-TACACCGGTCAGC-ACAA- 1563
Query 2046 AGGAGAAT-GTCGTA-TCCCC-CCACGCAAGATACGTTTA-GATGGAACAAAGGGTCATT 2101
| ||||| | || | | | || | | | | |||| | | |||||||||||||||||
Sbjct 1564 ACGAGAAGAGACGGAGTTCGTTCC-CTCTTGGTTCGTTCAAG-TGGAACAAAGGGTCATT 1621
Query 2102 GGTCATGAGCAACAGCAGCAGCCACAGAGG-TCCTGGTTCA-C--CTGGAGGTG-TGGT- 2155
| ||||||||| || ||| | | ||| ||| ||| ||||| | || |||| || |
Sbjct 1622 GTTCATGAGCAGCAACAGTAACAACA-AGGGTCCAGGTTCTTCTTCTTCTGGTGCTGTTG 1680
Query 2156 T-CTTGAGAAGCACAAGACACTTAAATCAGTAGGAAATTTGAGCATTGGTTCCACTGCCT 2214
| |||||||||||||| || || ||||| || ||||||||||| |||| ||| || | |
Sbjct 1681 TGCTTGAGAAGCACAAAACCCTCAAATCCGTTGGAAATTTGAGTATTGATTCTACGGTTT 1740
Query 2215 CCATGGCAACAACAGTTGGGAGAAAGGAatttaacagatttgtgtgatttcttt 2268
| ||| | ||||| ||||||| | || ||||||||||||| ||||||| |||
Sbjct 1741 CGATGCCTGCAACAATTGGGAGGAGGGCTTTTAACAGATTTGCGTGATTT-TTT 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94425717355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5