BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43720.1

Length=509
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483486 jgi|Araly1|483486|fgenesh2_kg.4__2546__AT2G43720.1         780    0.0  
  Ahg470580 jgi|Araly1|470580|fgenesh2_kg.1__534__AT1G05730.1         87.9    6e-17


> Ahg483486 jgi|Araly1|483486|fgenesh2_kg.4__2546__AT2G43720.1
Length=497

 Score =  780 bits (422),  Expect = 0.0
 Identities = 476/501 (95%), Gaps = 7/501 (1%)
 Strand=Plus/Plus

Query  1    CTAATAAATCAACTCGCCGGGAAAAAATGGATCAAACGGCGGAGGAGAAGATGGTGAGAG  60
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CTAATAAATCAACTCGCC-GGAAAAAATGGATCAAACGGCGGAGGAGAAGATGGTGAGAG  59

Query  61   AGAGGATTAGAAAGAAAGTTAACGAAGTCAGTTCTGCGTCGCAGTCTCTTCTTTCTCCAG  120
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  60   AGAGAATTAGAAAGAAAGTTAACGAAGTCAGTTCTGCGTCGCAGTCTCTTCTTTCTCCAA  119

Query  121  TACAAGACCACATCAATTTCACCCTTCAAAAGGCATATTTCAAATGTGCATACGAGTGCT  180
            ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct  120  TACAAGACCACATCAATTTCACCCTTCAAAAGGCATACTTCAAATGTGCATATGAGTGCT  179

Query  181  TTGATAGGACAAGAACACACGCTGAGATTAGTCGATGTGCAGAGAGTTGCAGTGTTCCTA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  TTGATAGGACAAGAACACACGCTGAGATTAGTCGATGTGCAGAGAGTTGCAGTGTTCCTA  239

Query  241  TCACAAATGCACAGAACTACTTTGATAATGAGATGTCGGTGTTCCAAGAGAGGTTGAATA  300
            |||||||| | |||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct  240  TCACAAATTCGCAGAACCACTTTGATAATGAGATGTCTGTGTTCCAAGAGAGGTTGAATA  299

Query  301  GATCTCTTGTGGTTTGTCAAGACAAGTTTGAGGTT-GCTAAGCA-ACAGAAGACGAGAAG  358
            |||||||||||||||||||||||||||||||| |  |||||||  | |||||||||||| 
Sbjct  300  GATCTCTTGTGGTTTGTCAAGACAAGTTTGAG-TCCGCTAAGCTTA-AGAAGACGAGAAA  357

Query  359  TGAAGCGGTAAATGATTTGGAGCATTGTGTAAACCAAACTGTTGATGAAGCTGTGAAGAC  418
            |||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct  358  TGAAGCTGTAAATGATTTGGAGCATTGCGTAAACCAAACTGTTGATGAAGCTGTCAAGAC  417

Query  419  TCTGCCTAATCTCGTCTCAAGAATGAAGAAAGCTTTGTCAATCACAGACTGAGCTCTCCA  478
            |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  TCTGCCTAATCTCGCCACAAGAATGAAGAAAGCTTTGTCAATCACAGACTGAGCTCTCCA  477

Query  479  ACGA-TTATAAAGAGGGACTC  498
            |  | || |||||||||||||
Sbjct  478  AAAACTT-TAAAGAGGGACTC  497


> Ahg470580 jgi|Araly1|470580|fgenesh2_kg.1__534__AT1G05730.1
Length=1001

 Score = 87.9 bits (47),  Expect = 6e-17
 Identities = 58/63 (92%), Gaps = 2/63 (3%)
 Strand=Plus/Plus

Query  123  CAAGACCACATCAATTTCACCCTTCA-AAAGGCATATTTCAAATGTGCATACGAGTGCTT  181
            ||||| ||||||||||||||||||||  || || ||||||||||||||||||||||||||
Sbjct  620  CAAGATCACATCAATTTCACCCTTCAGCAA-GCTTATTTCAAATGTGCATACGAGTGCTT  678

Query  182  TGA  184
            |||
Sbjct  679  TGA  681



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18505460665


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5