BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43730.1 Length=1047 Score E Sequences producing significant alignments: (Bits) Value Ahg902389 jgi|Araly1|902389|Al_scaffold_0004_3039 693 0.0 Ahg483487 jgi|Araly1|483487|fgenesh2_kg.4__2547__AT2G43740.1 202 5e-51 Ahg935287 jgi|Araly1|935287|scaffold_403275.1 187 1e-46 Ahg346189 jgi|Araly1|346189|fgenesh1_pg.C_scaffold_4002531 69.4 5e-11 > Ahg902389 jgi|Araly1|902389|Al_scaffold_0004_3039 Length=561 Score = 693 bits (375), Expect = 0.0 Identities = 507/567 (89%), Gaps = 24/567 (4%) Strand=Plus/Plus Query 326 TCCATAAAATGTATTCAGTTTAGCTATTTTCATAACGGAGTTCATGTCGTGTCTGAAAAG 385 ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 1 TCCATCAAATGTATTCAGTTTAGCTATTTTCAGAACGGAATTCATGTCGTGTCTGAAAAG 60 Query 386 CACGGTTCGTCCAAAGGTCAATCCTACGAAATCGTGAGACTGAATGACGATGAGTATGTG 445 |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 61 TACGGTTCGTCCAAAGGTCGATCCTACGAAATAGTGAGACTGAATGACGATGAGTATGTG 120 Query 446 ACTGGGTTGAGTGGAATATTTTGGGAGAGAAAGGTCACGTCTTTGACATTTCACACTAAT 505 |||| |||||||||||||| || || |||||| |||||||||||||||||||||||||| Sbjct 121 ACTGCGTTGAGTGGAATATATTATGAAAGAAAGATCACGTCTTTGACATTTCACACTAAT 180 Query 506 CAGGGGAAACACGGGCCGTTTTGTAATGGAACTGGATATTCATCAAGTTA-TATGGC-AG 563 |||||||||||||||||||||||| || | ||||||||||||||| ||| | |||| | Sbjct 181 CAGGGGAAACACGGGCCGTTTTGTGATATACCTGGATATTCATCAA-TTATTGTGGCTGG 239 Query 564 ATTATAAGAAGG-AAATTGATGTGAAGATACGTGATCGTCGTGAGTTTGGTGGTTTCTTT 622 | || | ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 A-CGTACG-AGGAAAATTGATGTGAAGATACGTGATCGTCGTGAGTTTGGTGGTTTCTTT 297 Query 623 GGGTCTTTTGATGACGAATTTGACGGTCTGACATCCATTGGCATTTATGTTTATCCCACG 682 ||||||||||||||| |||| || |||||| |||||||| |||||||||||||||||| Sbjct 298 GGGTCTTTTGATGAC---TTTGGCGATCTGACTTCCATTGGAATTTATGTTTATCCCACG 354 Query 683 TACGATAACAAGCCCACTCTCAATCAAGCATGGGATCCTCTATATGCATTCGC-C----- 736 ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 355 TACCATAACAAGCCCACTCTCAATCAAGCATGGGATCCTCTATATACATTCGCTCATAAA 414 Query 737 C--A---T-AAT--C-AAATCCCGACGATCGCGGATGGTATTCCTGTTATGCACATCCGT 787 | | | ||| | ||||||| ||||||| ||||||||||||||||| ||||||||| Sbjct 415 CGTACACTCAATTACCAAATCCCTACGATCGTGGATGGTATTCCTGTTAAACACATCCGT 474 Query 788 TATAAGCCCAAACTCAAAGACCGGATATTTTCCAAGTTGGATTTCAAAAGAGCTATGTTG 847 ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | Sbjct 475 TATAAGCCCAAACTCAAAGACCGGATACTTTCCAAGTTGGATTTCAAAAGTGCTATGTGG 534 Query 848 TGCCTGATAAAAGTTTTCTTGGATTAA 874 ||||| ||||||| ||||||||||||| Sbjct 535 TGCCTCATAAAAGCTTTCTTGGATTAA 561 > Ahg483487 jgi|Araly1|483487|fgenesh2_kg.4__2547__AT2G43740.1 Length=1284 Score = 202 bits (109), Expect = 5e-51 Identities = 292/373 (78%), Gaps = 42/373 (11%) Strand=Plus/Plus Query 42 TAAATTTACTGTTTTCGAAGTT-ATTTACATTTT-GATTAAGGAAGTTTTCTTAGAGA-A 98 |||||||||||||||| || || | |||||||| | ||||| ||| ||||| ||||| | Sbjct 64 TAAATTTACTGTTTTC-AACTTGAAATACATTTTAGTTTAAGAAAGATTTCTCAGAGAGA 122 Query 99 --AT-TATGT--AGCTTTTCTTCGTCTATATAAGTATGGATCCTCATCACAAGAAC-AAA 152 || ||||| |||||||||||||||||||||||||||||| || ||||||| | | Sbjct 123 TTATGTATGTAAAGCTTTTCTTCGTCTATATAAGTATGGATCGTCCTCACAAGTCCGAGC 182 Query 153 TT-ATT-TTATCAAGAAAAGAGTTTTAATATTTTCAACTGCTATTTTCAATGAAATCTCG 210 || ||| || || || ||||| | | | ||| ||||||||| || Sbjct 183 TTAATTCTT-TC-------GA---CTAATA----C-A-TTCTA-----AATGAAATCCCG 220 Query 211 TAATAGGGAGATGTTCAAAGTCGGACCAATTGGGTCAAAGCAAT-ATTATGATAAGAGTT 269 | |||||||||||||||||||||||||||||||||||| | | ||||| |||||| || Sbjct 221 TGGTAGGGAGATGTTCAAAGTCGGACCAATTGGGTCAAAACG-TGATTATCATAAGAATT 279 Query 270 GGGA-----A-GAGAAGGGACGCAACATGATATCTAGTATATATGTTGCTTTCAACAAAG 323 ||| | |||||||||||||||||||| ||||||||||||||||||||| ||| || Sbjct 280 TGGAGTGGGACGAGAAGGGACGCAACATGATCTCTAGTATATATGTTGCTTTCGACAGAG 339 Query 324 ATTCCATAAAATGTATTCAGTTTAGCTATTTTCATAACGGAGTTCATGTCGTGTCTGAAA 383 || ||||||| ||||||||||||||| ||| ||||||| ||||||||| ||||||| Sbjct 340 ATGCCATAAACCACATTCAGTTTAGCTATCGTCAGAACGGAGGTCATGTCGTTTCTGAAA 399 Query 384 AGCACGGTTCGTC 396 || | ||| |||| Sbjct 400 AGTATGGTGCGTC 412 Score = 191 bits (103), Expect = 1e-47 Identities = 211/259 (81%), Gaps = 23/259 (9%) Strand=Plus/Plus Query 421 GAGACTGAATGACGATGAGTATGTGACTGGGTTGAGTGGAATATTTTGGGAGAGAAAGGT 480 |||||| |||||||| |||| |||||| || ||||||| |||| || | | | ||| Sbjct 524 GAGACTAAATGACGACGAGTTTGTGACCGGCTTGAGTGCAATAGATT-GTATTG--GGGT 580 Query 481 CACGTCTTTGACAT-TTCACACTAATCAGGGGAAACACGGGCCGTTTTGTAATGGAACTG 539 ||| |||||| || |||||||||||||||||||||||||||| ||||| || | | Sbjct 581 CACCACTTTGA-ATATTCACACTAATCAGGGGAAACACGGGCCAATTTGTGAT---A-T- 634 Query 540 GATATTC-ATCAAGTT----ATATGGCA-GATTATAAGAAGGAAATTGATGTGAAGATAC 593 || ||| ||| |||| |||||| | | ||||||| |||||||||||||||||||| Sbjct 635 -AT-TTCAATC-AGTTACGAATATGG-ATAAATATAAGAGGGAAATTGATGTGAAGATAC 690 Query 594 GTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATGACGAATTTGACGGTCTGA 653 |||||||||||||||||||||||||||||||||||||||||||| | | | | ||||| Sbjct 691 GTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATGACTA-TG-G-CAATCTGA 747 Query 654 CATCCATTGGCATTTATGT 672 | ||||||||||||||||| Sbjct 748 CTTCCATTGGCATTTATGT 766 > Ahg935287 jgi|Araly1|935287|scaffold_403275.1 Length=883 Score = 187 bits (101), Expect = 1e-46 Identities = 329/432 (76%), Gaps = 43/432 (10%) Strand=Plus/Plus Query 269 TGGGAAGAGAAGGGACGCAACATGATATC-TAGTATATATGTTGCTTTCAACAAAGA--- 324 ||||| |||||||||| ||||||||| || || |||||||||| | || | || Sbjct 69 TGGGACGAGAAGGGACACAACATGATCTCTTA-CATATATGTTGAGCACGACGACGACCG 127 Query 325 TTCCATAA-AA--TGTATTCAGTTTAG-CTATTTTCATAACG-GAG-TTCATGTCGTGTC 378 | ||||| || | |||||| ||| | ||||||||| || | || | || || |||| Sbjct 128 TAACATAATAACGTCTATTCAATTT-GTCTATTTTCACAA-GAAAGCTCCA-ATCATGTC 184 Query 379 TGAAAAGCACGGTT-C---GTCCAAAGGTCAATCCTACGAAATCG-TGAGACTGAATGAC 433 | ||||||| |||| | || | ||||| || | | ||| | | ||||||||| || Sbjct 185 TAAAAAGCATGGTTGCTATGTAC-AAGGTGAAAAATTCTTAAT-GATAAGACTGAATCAC 242 Query 434 GATGAGTATGTGACTGGGTTGAGTGGAATATTTTGGGAGAGAAAGG-TCACGTCTTTGAC 492 |||||||||||||||||||||||||||||| |||||| || | || ||||||||||||| Sbjct 243 GATGAGTATGTGACTGGGTTGAGTGGAATAGATTGGGA-AGGAGGGGTCACGTCTTTGAC 301 Query 493 ATTTCACACTAATCAGGGGAAACACGGGCCGTTTTGTAATG-GAACTGGATATTCATCAA 551 |||| ||||||| ||| ||||| |||| ||| ||||||| | || || || | ||| Sbjct 302 ATTTTACACTAACCAGAGGAAAGACGGACCGATTTGTAA-GAGATTTG-AT-T--ATC-- 354 Query 552 GTTATATGGCAGATTATAAGAAGGAAATTGATGTGAAGATACGTGATCGTCGTGAGTTTG 611 ||| | | | | | | | || ||||||| ||||| ||||||||||||||||||||||| Sbjct 355 -TTAAA-GACCG-T-A-A-GAGGGAAATTAATGTGGGGATACGTGATCGTCGTGAGTTTG 408 Query 612 GTGGTTTCTTTGGGTCTTT-TGATGACGAATT-T-GACGGTCTGACATCCATTGGCATTT 668 ||||||||||||||||||| | || | || | | | |||||| ||||||||||||| Sbjct 409 GTGGTTTCTTTGGGTCTTTCTCC--ACTA-TTATCGGCTGTCTGAGTTCCATTGGCATTT 465 Query 669 ATGTTTATCCCA 680 |||| | ||||| Sbjct 466 ATGTCTGTCCCA 477 > Ahg346189 jgi|Araly1|346189|fgenesh1_pg.C_scaffold_4002531 Length=540 Score = 69.4 bits (37), Expect = 5e-11 Identities = 75/92 (82%), Gaps = 8/92 (9%) Strand=Plus/Plus Query 590 ATACGTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATGACGAATTTGACGGT 649 ||| ||||||| |||||||||||||||||||||||||||| ||| | || | || || Sbjct 415 ATATGTGATCGCCGTGAGTTTGGTGGTTTCTTTGGGTCTTACGAT-A-GA-T---ACCGT 468 Query 650 CTGACATCCATTGGCATTTATGTTTA-TCCCA 680 |||||||| ||||| || ||| || | ||||| Sbjct 469 CTGACATCGATTGGTATGTAT-TTGAGTCCCA 499 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38961621174 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5