BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43730.1
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902389 jgi|Araly1|902389|Al_scaffold_0004_3039 693 0.0
Ahg483487 jgi|Araly1|483487|fgenesh2_kg.4__2547__AT2G43740.1 202 5e-51
Ahg935287 jgi|Araly1|935287|scaffold_403275.1 187 1e-46
Ahg346189 jgi|Araly1|346189|fgenesh1_pg.C_scaffold_4002531 69.4 5e-11
> Ahg902389 jgi|Araly1|902389|Al_scaffold_0004_3039
Length=561
Score = 693 bits (375), Expect = 0.0
Identities = 507/567 (89%), Gaps = 24/567 (4%)
Strand=Plus/Plus
Query 326 TCCATAAAATGTATTCAGTTTAGCTATTTTCATAACGGAGTTCATGTCGTGTCTGAAAAG 385
||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1 TCCATCAAATGTATTCAGTTTAGCTATTTTCAGAACGGAATTCATGTCGTGTCTGAAAAG 60
Query 386 CACGGTTCGTCCAAAGGTCAATCCTACGAAATCGTGAGACTGAATGACGATGAGTATGTG 445
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TACGGTTCGTCCAAAGGTCGATCCTACGAAATAGTGAGACTGAATGACGATGAGTATGTG 120
Query 446 ACTGGGTTGAGTGGAATATTTTGGGAGAGAAAGGTCACGTCTTTGACATTTCACACTAAT 505
|||| |||||||||||||| || || |||||| ||||||||||||||||||||||||||
Sbjct 121 ACTGCGTTGAGTGGAATATATTATGAAAGAAAGATCACGTCTTTGACATTTCACACTAAT 180
Query 506 CAGGGGAAACACGGGCCGTTTTGTAATGGAACTGGATATTCATCAAGTTA-TATGGC-AG 563
|||||||||||||||||||||||| || | ||||||||||||||| ||| | |||| |
Sbjct 181 CAGGGGAAACACGGGCCGTTTTGTGATATACCTGGATATTCATCAA-TTATTGTGGCTGG 239
Query 564 ATTATAAGAAGG-AAATTGATGTGAAGATACGTGATCGTCGTGAGTTTGGTGGTTTCTTT 622
| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 A-CGTACG-AGGAAAATTGATGTGAAGATACGTGATCGTCGTGAGTTTGGTGGTTTCTTT 297
Query 623 GGGTCTTTTGATGACGAATTTGACGGTCTGACATCCATTGGCATTTATGTTTATCCCACG 682
||||||||||||||| |||| || |||||| |||||||| ||||||||||||||||||
Sbjct 298 GGGTCTTTTGATGAC---TTTGGCGATCTGACTTCCATTGGAATTTATGTTTATCCCACG 354
Query 683 TACGATAACAAGCCCACTCTCAATCAAGCATGGGATCCTCTATATGCATTCGC-C----- 736
||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 355 TACCATAACAAGCCCACTCTCAATCAAGCATGGGATCCTCTATATACATTCGCTCATAAA 414
Query 737 C--A---T-AAT--C-AAATCCCGACGATCGCGGATGGTATTCCTGTTATGCACATCCGT 787
| | | ||| | ||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 415 CGTACACTCAATTACCAAATCCCTACGATCGTGGATGGTATTCCTGTTAAACACATCCGT 474
Query 788 TATAAGCCCAAACTCAAAGACCGGATATTTTCCAAGTTGGATTTCAAAAGAGCTATGTTG 847
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
Sbjct 475 TATAAGCCCAAACTCAAAGACCGGATACTTTCCAAGTTGGATTTCAAAAGTGCTATGTGG 534
Query 848 TGCCTGATAAAAGTTTTCTTGGATTAA 874
||||| ||||||| |||||||||||||
Sbjct 535 TGCCTCATAAAAGCTTTCTTGGATTAA 561
> Ahg483487 jgi|Araly1|483487|fgenesh2_kg.4__2547__AT2G43740.1
Length=1284
Score = 202 bits (109), Expect = 5e-51
Identities = 292/373 (78%), Gaps = 42/373 (11%)
Strand=Plus/Plus
Query 42 TAAATTTACTGTTTTCGAAGTT-ATTTACATTTT-GATTAAGGAAGTTTTCTTAGAGA-A 98
|||||||||||||||| || || | |||||||| | ||||| ||| ||||| ||||| |
Sbjct 64 TAAATTTACTGTTTTC-AACTTGAAATACATTTTAGTTTAAGAAAGATTTCTCAGAGAGA 122
Query 99 --AT-TATGT--AGCTTTTCTTCGTCTATATAAGTATGGATCCTCATCACAAGAAC-AAA 152
|| ||||| |||||||||||||||||||||||||||||| || ||||||| | |
Sbjct 123 TTATGTATGTAAAGCTTTTCTTCGTCTATATAAGTATGGATCGTCCTCACAAGTCCGAGC 182
Query 153 TT-ATT-TTATCAAGAAAAGAGTTTTAATATTTTCAACTGCTATTTTCAATGAAATCTCG 210
|| ||| || || || ||||| | | | ||| ||||||||| ||
Sbjct 183 TTAATTCTT-TC-------GA---CTAATA----C-A-TTCTA-----AATGAAATCCCG 220
Query 211 TAATAGGGAGATGTTCAAAGTCGGACCAATTGGGTCAAAGCAAT-ATTATGATAAGAGTT 269
| |||||||||||||||||||||||||||||||||||| | | ||||| |||||| ||
Sbjct 221 TGGTAGGGAGATGTTCAAAGTCGGACCAATTGGGTCAAAACG-TGATTATCATAAGAATT 279
Query 270 GGGA-----A-GAGAAGGGACGCAACATGATATCTAGTATATATGTTGCTTTCAACAAAG 323
||| | |||||||||||||||||||| ||||||||||||||||||||| ||| ||
Sbjct 280 TGGAGTGGGACGAGAAGGGACGCAACATGATCTCTAGTATATATGTTGCTTTCGACAGAG 339
Query 324 ATTCCATAAAATGTATTCAGTTTAGCTATTTTCATAACGGAGTTCATGTCGTGTCTGAAA 383
|| ||||||| ||||||||||||||| ||| ||||||| ||||||||| |||||||
Sbjct 340 ATGCCATAAACCACATTCAGTTTAGCTATCGTCAGAACGGAGGTCATGTCGTTTCTGAAA 399
Query 384 AGCACGGTTCGTC 396
|| | ||| ||||
Sbjct 400 AGTATGGTGCGTC 412
Score = 191 bits (103), Expect = 1e-47
Identities = 211/259 (81%), Gaps = 23/259 (9%)
Strand=Plus/Plus
Query 421 GAGACTGAATGACGATGAGTATGTGACTGGGTTGAGTGGAATATTTTGGGAGAGAAAGGT 480
|||||| |||||||| |||| |||||| || ||||||| |||| || | | | |||
Sbjct 524 GAGACTAAATGACGACGAGTTTGTGACCGGCTTGAGTGCAATAGATT-GTATTG--GGGT 580
Query 481 CACGTCTTTGACAT-TTCACACTAATCAGGGGAAACACGGGCCGTTTTGTAATGGAACTG 539
||| |||||| || |||||||||||||||||||||||||||| ||||| || | |
Sbjct 581 CACCACTTTGA-ATATTCACACTAATCAGGGGAAACACGGGCCAATTTGTGAT---A-T- 634
Query 540 GATATTC-ATCAAGTT----ATATGGCA-GATTATAAGAAGGAAATTGATGTGAAGATAC 593
|| ||| ||| |||| |||||| | | ||||||| ||||||||||||||||||||
Sbjct 635 -AT-TTCAATC-AGTTACGAATATGG-ATAAATATAAGAGGGAAATTGATGTGAAGATAC 690
Query 594 GTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATGACGAATTTGACGGTCTGA 653
|||||||||||||||||||||||||||||||||||||||||||| | | | | |||||
Sbjct 691 GTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATGACTA-TG-G-CAATCTGA 747
Query 654 CATCCATTGGCATTTATGT 672
| |||||||||||||||||
Sbjct 748 CTTCCATTGGCATTTATGT 766
> Ahg935287 jgi|Araly1|935287|scaffold_403275.1
Length=883
Score = 187 bits (101), Expect = 1e-46
Identities = 329/432 (76%), Gaps = 43/432 (10%)
Strand=Plus/Plus
Query 269 TGGGAAGAGAAGGGACGCAACATGATATC-TAGTATATATGTTGCTTTCAACAAAGA--- 324
||||| |||||||||| ||||||||| || || |||||||||| | || | ||
Sbjct 69 TGGGACGAGAAGGGACACAACATGATCTCTTA-CATATATGTTGAGCACGACGACGACCG 127
Query 325 TTCCATAA-AA--TGTATTCAGTTTAG-CTATTTTCATAACG-GAG-TTCATGTCGTGTC 378
| ||||| || | |||||| ||| | ||||||||| || | || | || || ||||
Sbjct 128 TAACATAATAACGTCTATTCAATTT-GTCTATTTTCACAA-GAAAGCTCCA-ATCATGTC 184
Query 379 TGAAAAGCACGGTT-C---GTCCAAAGGTCAATCCTACGAAATCG-TGAGACTGAATGAC 433
| ||||||| |||| | || | ||||| || | | ||| | | ||||||||| ||
Sbjct 185 TAAAAAGCATGGTTGCTATGTAC-AAGGTGAAAAATTCTTAAT-GATAAGACTGAATCAC 242
Query 434 GATGAGTATGTGACTGGGTTGAGTGGAATATTTTGGGAGAGAAAGG-TCACGTCTTTGAC 492
|||||||||||||||||||||||||||||| |||||| || | || |||||||||||||
Sbjct 243 GATGAGTATGTGACTGGGTTGAGTGGAATAGATTGGGA-AGGAGGGGTCACGTCTTTGAC 301
Query 493 ATTTCACACTAATCAGGGGAAACACGGGCCGTTTTGTAATG-GAACTGGATATTCATCAA 551
|||| ||||||| ||| ||||| |||| ||| ||||||| | || || || | |||
Sbjct 302 ATTTTACACTAACCAGAGGAAAGACGGACCGATTTGTAA-GAGATTTG-AT-T--ATC-- 354
Query 552 GTTATATGGCAGATTATAAGAAGGAAATTGATGTGAAGATACGTGATCGTCGTGAGTTTG 611
||| | | | | | | | || ||||||| ||||| |||||||||||||||||||||||
Sbjct 355 -TTAAA-GACCG-T-A-A-GAGGGAAATTAATGTGGGGATACGTGATCGTCGTGAGTTTG 408
Query 612 GTGGTTTCTTTGGGTCTTT-TGATGACGAATT-T-GACGGTCTGACATCCATTGGCATTT 668
||||||||||||||||||| | || | || | | | |||||| |||||||||||||
Sbjct 409 GTGGTTTCTTTGGGTCTTTCTCC--ACTA-TTATCGGCTGTCTGAGTTCCATTGGCATTT 465
Query 669 ATGTTTATCCCA 680
|||| | |||||
Sbjct 466 ATGTCTGTCCCA 477
> Ahg346189 jgi|Araly1|346189|fgenesh1_pg.C_scaffold_4002531
Length=540
Score = 69.4 bits (37), Expect = 5e-11
Identities = 75/92 (82%), Gaps = 8/92 (9%)
Strand=Plus/Plus
Query 590 ATACGTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATGACGAATTTGACGGT 649
||| ||||||| |||||||||||||||||||||||||||| ||| | || | || ||
Sbjct 415 ATATGTGATCGCCGTGAGTTTGGTGGTTTCTTTGGGTCTTACGAT-A-GA-T---ACCGT 468
Query 650 CTGACATCCATTGGCATTTATGTTTA-TCCCA 680
|||||||| ||||| || ||| || | |||||
Sbjct 469 CTGACATCGATTGGTATGTAT-TTGAGTCCCA 499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38961621174
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5