BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43740.1
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483487 jgi|Araly1|483487|fgenesh2_kg.4__2547__AT2G43740.1 1164 0.0
Ahg935287 jgi|Araly1|935287|scaffold_403275.1 379 3e-104
Ahg902389 jgi|Araly1|902389|Al_scaffold_0004_3039 230 3e-59
Ahg346189 jgi|Araly1|346189|fgenesh1_pg.C_scaffold_4002531 78.7 1e-13
> Ahg483487 jgi|Araly1|483487|fgenesh2_kg.4__2547__AT2G43740.1
Length=1284
Score = 1164 bits (630), Expect = 0.0
Identities = 937/1075 (87%), Gaps = 62/1075 (6%)
Strand=Plus/Plus
Query 376 TCCGAGCTTAATTCTTTCGTCTGCTATATTCTAAATGAAATCCCGTGGTAGGGAGATGTT 435
||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 176 TCCGAGCTTAATTCTTTCGACTAATACATTCTAAATGAAATCCCGTGGTAGGGAGATGTT 235
Query 436 CAAAGTCGGACCAATTGGGTCACAACGTGCTTATCTTAAGAATTTGGAATGGGAAGAGAA 495
|||||||||||||||||||||| |||||| ||||| |||||||||||| ||||| |||||
Sbjct 236 CAAAGTCGGACCAATTGGGTCAAAACGTGATTATCATAAGAATTTGGAGTGGGACGAGAA 295
Query 496 GGGACGCAACATGATCTCTAGTATATATGTCGCTTTCGACAAAGATACCATAAATTC-TA 554
|||||||||||||||||||||||||||||| |||||||||| |||| ||||||| | |
Sbjct 296 GGGACGCAACATGATCTCTAGTATATATGTTGCTTTCGACAGAGATGCCATAAA-CCACA 354
Query 555 TTCAGTTTAGCTATTGTCAGAACGGAGGTCATGTCGTGTCTAAAAAGTATGGTATGTCTG 614
|||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 355 TTCAGTTTAGCTATCGTCAGAACGGAGGTCATGTCGTTTCTGAAAAGTATGGTGCGTCTG 414
Query 615 ATGCCCA--AAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATGTTTGTTTT 672
||| ||| |||| |||||||||| ||| ||| |||| || ||||||||||||||||||
Sbjct 415 ATG-CCATTAAAA-GAAAGTATGGTACGTCCAAAGGTCAATCCCACGTAATGTTTGTTTT 472
Query 673 TGCT-CTTGTTACTGATGACCACGTTAAAACAAATTTATGCAATATACAGGTGAGACTAA 731
|| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 473 TG-TAATGGTTACTGATGACCACGTTAAAACAAATTTATGCAATATACAGGCGAGACTAA 531
Query 732 ATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTTTGTAAAGGGATCACGAATT 791
||||||| |||||||||||||| |||||||||||| | ||||| ||| |||| | ||
Sbjct 532 ATGACGACGAGTTTGTGACCGGCTTGAGTGCAATAGA---TTGTATTGGGGTCACCACTT 588
Query 792 TGAATATTCACACTAATCAGGGGAAACACGGCCCGATTTGTGATAGATATTC-ATCA-TC 849
||||||||||||||||||||||||||||||| || |||||||||| || ||| |||| |
Sbjct 589 TGAATATTCACACTAATCAGGGGAAACACGGGCCAATTTGTGATATAT-TTCAATCAGT- 646
Query 850 AAAGAATATTATGGATAACTATAAG-GTGGAAATTGATGTGAAGATACGTGATCGTCGTG 908
| | | | ||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 647 TACG-A-A-TATGGATAAATATAAGAG-GGAAATTGATGTGAAGATACGTGATCGTCGTG 702
Query 909 AGTTTGGTGGTTTCTTTGGGTCTTTTGATAACTATGGCACTCTGACTTCCATTGGCATTT 968
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 703 AGTTTGGTGGTTTCTTTGGGTCTTTTGATGACTATGGCAATCTGACTTCCATTGGCATTT 762
Query 969 ATGTGTGTCCCATTACAAGGATCAATGACGTAGCCCTCAGAACCAACTACAAAGTCACCG 1028
||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 763 ATGTGCGTCCCATTACAAGGATCAATGACGCCGCCCTCAGAACCAACTACAAAGTTACCG 822
Query 1029 ATG--ACT-ACGACGA------CCAAAGCACTTTCTATCAATCATCTGGTCCTTTAACCA 1079
| | || ||||||| ||| |||||| |||| ||||||| |||||||||||| |
Sbjct 823 AAGTCACCGACGACGAAGATGACCAGAGCACTCTCTACCAATCATATGGTCCTTTAACTA 882
Query 1080 CAATCAACCATAATCGGAAGCTTGAATATCAAATGCCTCATGAGGTCTCCGATG-TCA-- 1136
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 883 CAATCAACCATAATCGGACGCTTGAATATCAAATGCCTCATGAGGTCTCCGATGGTTATC 942
Query 1137 A-G-C---CC-ATTGTTCATAACCCCAATTTCGAAGACAAGATCAGTCTCTACCAATCAT 1190
| | | || || ||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 943 ATGTCAATCCCATCGTTCAGAAGCCCAAGTTCGAAGACAAGATCAGTCTCTACCAATCAT 1002
Query 1191 CGGATCGTCTAGCCAGAAGCACTAACACTCGGACACTTGAGTATCAGATCCCGGAGTTCC 1250
| ||||||||||||||||||||||||| |||||||||||||||| | | |||||||||||
Sbjct 1003 CTGATCGTCTAGCCAGAAGCACTAACAATCGGACACTTGAGTATGAAAGCCCGGAGTTCC 1062
Query 1251 TCGATG-T---CA--AT--C---CC-ATTGGTCGTAAGTCC-AAACTCAAATATGGCATA 1297
|||||| | || || | || |||||||||||| || |||||||||||||| |||
Sbjct 1063 TCGATGCTTTTCATCATGTCAAGCCCATTGGTCGTAAG-CCTAAACTCAAATATGGGATA 1121
Query 1298 TTCTCCAAGTTG-GCGCGTCTTTTCAGAAATCTCTTGGATTAGATCt--ttttttttt-t 1353
|||||||||||| | ||| |||||||||||||||||| | || || | ||||||||| |
Sbjct 1122 TTCTCCAAGTTGAG-GCGCCTTTTCAGAAATCTCTTGAACTA-AT-TAGTTTTTTTTTGT 1178
Query 1354 CGTTTGCATTCGTGCAAGATC-CGGATTGGTATGTATTTGAGTCCCACCCA-TTA 1406
|||||||||||||||||||| | || ||||||| ||||| ||||| ||| |||
Sbjct 1179 GGTTTGCATTCGTGCAAGATCTCC-ATCGGTATGTTTTTGAATCCCAACCACTTA 1232
Score = 143 bits (77), Expect = 4e-33
Identities = 107/121 (88%), Gaps = 3/121 (2%)
Strand=Plus/Plus
Query 225 AATTTAGTAAATTTACTGTTTTCAAGTTGCTTTACATTTT-GATTAAGGAAGTTTTCTTA 283
||||||||||||||||||||||||| ||| |||||||| | ||||| ||| ||||| |
Sbjct 57 AATTTAGTAAATTTACTGTTTTCAACTTGAAATACATTTTAGTTTAAGAAAGATTTCTCA 116
Query 284 GAGAGATTAGGTATGTAAAGCTTTTCTTCGTCTATATATAAGTATAGATCGTCCTCAGAA 343
||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||| ||
Sbjct 117 GAGAGATTATGTATGTAAAGCTTTTCTTCGTCTATATA-A-GTATGGATCGTCCTCACAA 174
Query 344 G 344
|
Sbjct 175 G 175
> Ahg935287 jgi|Araly1|935287|scaffold_403275.1
Length=883
Score = 379 bits (205), Expect = 3e-104
Identities = 525/667 (79%), Gaps = 71/667 (11%)
Strand=Plus/Plus
Query 725 AGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTTTGTAA--AGGGA 782
||||| ||| ||||||||| |||||| |||||||||| |||| | || | || ||||
Sbjct 231 AGACTGAATCACGATGAGTATGTGACTGGGTTGAGTGGAATAGA--TTGGGAAGGAGGGG 288
Query 783 TCACGAATTTGA-ATATTCACACTAATCAGGGGAAACACGGCCCGATTTGTGATAGATAT 841
||||| ||||| || || ||||||| ||| ||||| |||| ||||||||| | ||| ||
Sbjct 289 TCACGTCTTTGACAT-TTTACACTAACCAGAGGAAAGACGGACCGATTTGT-A-AGAGAT 345
Query 842 TCATCATCAAAGAATATTATGGATA-ACTATAAG-GTGGAAATTGATGTGAAGATACGTG 899
| | || || ||| | | || |||| | ||||||| ||||| ||||||||
Sbjct 346 T--TGAT-----TATCTTA---A-AGACCGTAAGAG-GGAAATTAATGTGGGGATACGTG 393
Query 900 ATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTT-TG-A-TAACTAT-GGCACTCTGACT 955
|||||||||||||||||||||||||||||||||| | | || ||| ||| ||||| |
Sbjct 394 ATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTCTCCACTAT-TATCGGCTGTCTGAGT 452
Query 956 TCCATTGGCATTTATGTGTGTCCCATTACAAGGATCAATGACGTAGCCCTCAGAACCAAC 1015
||||||||||||||||| |||||||||||||| |||||||||| || ||||||||||
Sbjct 453 TCCATTGGCATTTATGTCTGTCCCATTACAAGCATCAATGACGCAG---TCAGAACCAAG 509
Query 1016 TACAAAGTCACCGATG--ACTA---C-GACGACCAA-AGC--ACTTTCTATCAATCATCT 1066
|||||||||||||| | || | | |||||| | ||| ||| |||| ||||||||
Sbjct 510 TACAAAGTCACCGAAGTCACAAATGCCGACGACGACCAGCTCACTCTCTACCAATCATCA 569
Query 1067 GGTCCTTTAACCAC-AATCAACCATAATCGGAA-GCTTGAATATCAAATGCCTCATGAGG 1124
| | || || || | ||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 570 GATTCTATAGCC-CTAATCAACCATAATCG-AACGCTTGAATATCAAATCCCTCATGAGG 627
Query 1125 TCTCCGATG-T---CA----A-GCCCATTGTTCATAACCCCAATTTCGAAGACAAGATCA 1175
|||||||| | || | |||||| ||||||| ||||| ||| ||||| || | |
Sbjct 628 CCTCCGATGGTTTTCATGTCAAGCCCATCATTCATAAGCCCAAGTTCAAAGACGAGCTGA 687
Query 1176 GTCTCTACCAATCATCGGATCGTCTAGCCAGAAGCACTAACACTCGGACACTTGAGTATC 1235
|||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 688 GTCTCTACCAATCATCTGATCTTCTAGCCAGAAGCACTAACAATCGGACACTTGAGTATC 747
Query 1236 AGATCCCGGAGTTCCTCGATGT----CAA--T--C---CC-ATTGGTCGTAAGTC-CAAA 1282
| | | |||||| |||||||| || | | || |||||| ||||| | ||||
Sbjct 748 AAAACTTGGAGTTTCTCGATGTTTTTCATCGTGTCAAGCCCATTGGTGGTAAG-CGCAAA 806
Query 1283 CTCAAATATG-GCATATTCTCCAAGTTGGCGCGTCTTTTCA-GAAATCTCTTGGATTAGA 1340
|||||| | | | ||||| |||||||||| ||| ||||| | ||| ||||||||||||||
Sbjct 807 CTCAAAGA-GAGTATATTGTCCAAGTTGGGGCGCCTTTTAAAGAA-TCTCTTGGATTAGA 864
Query 1341 TCttttt 1347
| |||||
Sbjct 865 T-TTTTT 870
> Ahg902389 jgi|Araly1|902389|Al_scaffold_0004_3039
Length=561
Score = 230 bits (124), Expect = 3e-59
Identities = 222/267 (83%), Gaps = 16/267 (6%)
Strand=Plus/Plus
Query 722 GTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTTTGTAAAG-- 779
|||||||| ||||||||||||| |||||| | |||||||| ||||||| | || ||||
Sbjct 94 GTGAGACTGAATGACGATGAGTATGTGACTGCGTTGAGTGGAATATAT-TATG-AAAGAA 151
Query 780 GGATCACGAATTTGA-ATATTCACACTAATCAGGGGAAACACGGCCCGATTTGTGATAGA 838
||||||| ||||| || ||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 152 AGATCACGTCTTTGACAT-TTCACACTAATCAGGGGAAACACGGGCCGTTTTGTGATATA 210
Query 839 TATTCATCA-TCAAAGAA-TATTATGGAT-AACTATAAGGTGG-AAATTGATGTGAAGAT 894
| || | || | || |||| ||| | || | | | || ||||||||||||||||
Sbjct 211 CCTGGAT-ATTC-ATCAATTATTGTGGCTGGAC-GT-ACGAGGAAAATTGATGTGAAGAT 266
Query 895 ACGTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATAACTATGGC-ACTCTGA 953
||||||||||||||||||||||||||||||||||||||||||| ||| |||| | |||||
Sbjct 267 ACGTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATGACTTTGGCGA-TCTGA 325
Query 954 CTTCCATTGGCATTTATGTGTGTCCCA 980
|||||||||| |||||||| | |||||
Sbjct 326 CTTCCATTGGAATTTATGTTTATCCCA 352
> Ahg346189 jgi|Araly1|346189|fgenesh1_pg.C_scaffold_4002531
Length=540
Score = 78.7 bits (42), Expect = 1e-13
Identities = 79/96 (82%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 893 ATACGTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATA-ACTATGGCACTCT 951
||| ||||||| |||||||||||||||||||||||||||| |||| | || | |||
Sbjct 415 ATATGTGATCGCCGTGAGTTTGGTGGTTTCTTTGGGTCTTACGATAGA-TACCG---TCT 470
Query 952 GACTTCCATTGGCATTTATGTGTGTCCCATTACAAG 987
||| || ||||| || ||| || |||||||||||||
Sbjct 471 GACATCGATTGGTATGTATTTGAGTCCCATTACAAG 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5