BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43745.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346189 jgi|Araly1|346189|fgenesh1_pg.C_scaffold_4002531 649 0.0
Ahg935291 jgi|Araly1|935291|scaffold_403279.1 259 3e-68
> Ahg346189 jgi|Araly1|346189|fgenesh1_pg.C_scaffold_4002531
Length=540
Score = 649 bits (351), Expect = 0.0
Identities = 462/512 (90%), Gaps = 21/512 (4%)
Strand=Plus/Plus
Query 625 ATGATAAGAGCAGGATCAGTGGGaaaaaaaTCGACA-TGTGAGTATACTTATTGGGAC-- 681
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 1 ATGATAAGAGCAGGATCAGTGGGAAAAATATCG-CATTGTGAGTATACTTATTGGGACGG 59
Query 682 GAC-GGTG-T--TGGAGAAGAGGTGATGGGTGACGATAGTTGGGATTACGAGGGACG--- 734
| | | || | |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 60 GTCTGATGCTCCTGGAGAAGAGGTGATGGGTGACGATAGTTGGGATGACAAGGGACGCAC 119
Query 735 CAAGATCTCTCACATATATGTTGCTTTCGACGAAGTCATAATGTCTATTCAGTTTGGTTT 794
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAAGATCTCTCACATATACGTTGCTTTCGACGAAGTCATAATGTCTATTCAGTTTGGTTT 179
Query 795 TTTGGAGAATGGAGCTCTAGTCCTGTCT-AAACAGCATGGTGGCATT-GAGGAGGGCTCC 852
|||||||||||||||||||||||||||| ||| || |||||| | || |||||||| |||
Sbjct 180 TTTGGAGAATGGAGCTCTAGTCCTGTCTGAAA-AGTATGGTGCC-TTCGAGGAGGGATCC 237
Query 853 AACTTTCGTGTTTTGAGACTGAATCAAGACGAATATGTAACTTGATTAAGTGGAGTACTA 912
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 238 AACTTTCGTGTTTTGAGACTGAATCAAGACGAATATGTAACTGGATTGAGTGGAGTACTA 297
Query 913 AGAAA-GCATGGTGGAGGGATCAGAAATTTGACATTTCGCACTAACGTCGGGGAGTATAT 971
|||| | |||| |||| ||||||||||||||| ||||||||||| | |||||||||||
Sbjct 298 -GAAAAGGATGGCAGAGGAATCAGAAATTTGACACTTCGCACTAACCTTGGGGAGTATAT 356
Query 972 GATTGGACGTTCAAGCGACAATTATCCAAATCATTGGA-AGATAGATATTGATCCGGCAA 1030
||||||||||||||||||||||||||||| | ||| | | |||||||||||||||||||
Sbjct 357 GATTGGACGTTCAAGCGACAATTATCCAAGTGATTCCACA-ATAGATATTGATCCGGCAA 415
Query 1031 TATGTGAT-GAACGTGAGTTTGGTGGTTTCTTTGGGTCTAACAATTTATACCATCTGACA 1089
|||||||| | ||||||||||||||||||||||||||| || || ||||| |||||||
Sbjct 416 TATGTGATCGC-CGTGAGTTTGGTGGTTTCTTTGGGTCTTACGATAGATACCGTCTGACA 474
Query 1090 TCGATTGGTATGTATTTGAGACCCATTACAAG 1121
|||||||||||||||||||| |||||||||||
Sbjct 475 TCGATTGGTATGTATTTGAGTCCCATTACAAG 506
> Ahg935291 jgi|Araly1|935291|scaffold_403279.1
Length=1302
Score = 259 bits (140), Expect = 3e-68
Identities = 148/152 (97%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 146 GTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAGTCGATTCGA 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 GTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAGTCGATTCGA 1210
Query 206 GAAGAGTGCGAGCAAATGCAGCCCGAGCTTTGATTTTCTTCTGTAATTTCGTGACCAACA 265
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1211 GAAGAGTGCGAGCAAATGCAGCCTGAGCTTTGAGTTTCTTCTGTAATTTCGTGACCAACA 1270
Query 266 AGGAACCTCTTCTTTGATTTATTGCTGATTGT 297
|||||||| ||||| |||||||||||||||||
Sbjct 1271 AGGAACCTTTTCTTCGATTTATTGCTGATTGT 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5