BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43750.1
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935291 jgi|Araly1|935291|scaffold_403279.1 2250 0.0
Ahg324433 jgi|Araly1|324433|fgenesh1_pm.C_scaffold_5001977 1033 0.0
Ahg342794 jgi|Araly1|342794|fgenesh1_pg.C_scaffold_3002557 115 9e-25
> Ahg935291 jgi|Araly1|935291|scaffold_403279.1
Length=1302
Score = 2250 bits (1218), Expect = 0.0
Identities = 1275/1303 (98%), Gaps = 1/1303 (0%)
Strand=Plus/Plus
Query 166 tctacttctctctGTGTACAATATTCGGAAAGTGAGGAAGATACACTGAAGCAAAAGAGC 225
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTACTTC-GTCTGTGTACAATATTCGGAAAGTGAGGAAGATACACTGAAGCAAAAGAGC 59
Query 226 AAGTCATGGCGGCGACATCTTCCTCTGCTTTTCTCCTTAATCCGTTGACTTCTCGCCACC 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAGTCATGGCGGCGACATCTTCCTCTGCTTTTCTCCTTAATCCGTTGACTTCTCGCCACC 119
Query 286 GTCCTTTCAAATACTCGCCAGAGCTCTCTTCTCTCTCCTTATCCTCTCGAAAGGCTGCTG 345
| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 GACCTTTCATATACTCGCCAGAGTTCTCTTCTCTCTCCTTATCCTCTCGAAAGGCTGCTG 179
Query 346 CTTTCGATGTTTCCTCAGCTGCTTTCACGCTCAAGAGACAGAGCCGGAGTGATGTTGTGT 405
|||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 180 CTTTCGATGTTTCCTCGGCTGCTCTCACGCTCAAGAGACAGAGCAGGAGTGATGTTGTGT 239
Query 406 GCAAGGCTGTATCTATCAAGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACG 465
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 GCAAGGCTGTATCTGTCAAGCCAGAAGCTGGTGTTGAAGGGCTTAATATCGCCGATAACG 299
Query 466 CCGCTCAGCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGTG 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCGCTCAGCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGTG 359
Query 526 TTGCAAGTGTTGCTGCTAAGCTTGAGATCATGGAACCATGTTGCAGTGTCAAGGATAGGA 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGCAAGTGTTGCTGCTAAGCTTGAGATCATGGAACCATGTTGCAGTGTCAAGGATAGGA 419
Query 586 TTGGGTACAGTATGATTACTGATGCTGAAGAGAAAGGACTTATAACACCTGGAAAGAGTG 645
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTGGGTATAGTATGATTACTGATGCTGAAGAGAAAGGACTTATAACACCTGGAAAGAGTG 479
Query 646 TTCTTGTGGAATCTACGAGTGGGAACACAGGGATTGGCCTTGCATTCATTGCTGCTTCAA 705
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 TTCTTGTGGAATCTACGAGTGGAAACACAGGGATTGGCCTTGCATTCATTGCTGCTTCAA 539
Query 706 AAGGCTATAAACTTATCTTGACGATGCCTGCGTCCATGAGTTTGGAAAGGCGGGTTCTTT 765
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 540 AAGGCTATAAACTTATCTTGACGATGCCCGCATCCATGAGTTTGGAAAGGCGGGTTCTTT 599
Query 766 TGAGGGCATTTGGAGCTGAGCTTGTGTTAACTGAACCTGCAAAAGGTATGACTGGAGCAA 825
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 TGAGGGCATTTGGAGCTGAGCTTGTATTAACTGAACCTGCAAAAGGTATGACTGGAGCAA 659
Query 826 TTCAGAAGGCTGAAGAAATCTTGaaaaaaaCTCCCAATTCCTACATGCTCCAACAGTTTG 885
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 660 TTCAGAAGGCTGAAGAAATCTTGAAGAAAACTCCCAATTCCTATATGCTCCAACAGTTTG 719
Query 886 ACAACCCTGCCAATCCCAAGATTCATTATGAGACGACTGGTCCTGAGATTTGGGAAGATA 945
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 720 ACAACCCTGCCAATCCCAAGATTCATTACGAGACGACTGGTCCTGAGATCTGGGAAGATA 779
Query 946 CAAGAGGCAAAATCGATATATTGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGGTG 1005
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CAAGAGGCAAAATTGATATATTGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGGTG 839
Query 1006 TTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGGTTATTGGTGTCGAACCCACGG 1065
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 840 TTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGGTTATTGGTGTAGAACCCACGG 899
Query 1066 AAAGTGCTATACTTTCTGGTGGAAAACCCGGACCTCACAAGATTCAAGGAATTGGAGCTG 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 AAAGTGCTATACTTTCTGGTGGAAAACCCGGACCTCACAAGATTCAAGGAATTGGGGCTG 959
Query 1126 GATTTGTACCCAAGAATTTGGATCTGGCTATTGTAGATGAATACATAGCGATTTCCAGTG 1185
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GATTTGTACCTAAGAATTTGGATCTGGCTATTGTAGATGAATACATAGCGATTTCCAGTG 1019
Query 1186 AGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAAGGCTTGTTGGTTGGTATAT 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAAGGCTTGTTGGTTGGTATAT 1079
Query 1246 CTTCTGGAgctgctgctgctgctgcAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGA 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTTCTGGAGCTGCTGCTGCTGCTGCAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGA 1139
Query 1306 AACTCATAGCCGTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCC 1365
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AACTCATAGCTGTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCC 1199
Query 1366 AGTCGATTCGAGAAGAGTGCGAGCAAATGCAGCCCGAGCTTTGATTTTCTTCTGTAATTT 1425
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1200 AGTCGATTCGAGAAGAGTGCGAGCAAATGCAGCCTGAGCTTTGAGTTTCTTCTGTAATTT 1259
Query 1426 CGTGACCAACAAGGAACCTCTTCTTTGATTTATTGCTGATTGT 1468
||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1260 CGTGACCAACAAGGAACCTTTTCTTCGATTTATTGCTGATTGT 1302
> Ahg324433 jgi|Araly1|324433|fgenesh1_pm.C_scaffold_5001977
Length=1314
Score = 1033 bits (559), Expect = 0.0
Identities = 845/982 (86%), Gaps = 23/982 (2%)
Strand=Plus/Plus
Query 433 CTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCG-CTCAGCTTATTGGGAAAACTCCG 491
|||| | ||| || ||||| ||||| ||||| | | ||||||| ||||||||||||||
Sbjct 332 CTGGAGCTGATGGACTCAAGATCGCTGATAATG-TGTCTCAGCTCATTGGGAAAACTCCT 390
Query 492 ATGGTGTACTTGAACAATGTAGTC-AAGGGCTGTGTTGCAAGTGTTGCTGCTAAGCTTGA 550
||||| |||||||| | | ||| | ||||| ||||| |||| | ||||||| || || ||
Sbjct 391 ATGGTCTACTTGAATAGTATAG-CAAAGGGTTGTGTAGCAAATATTGCTGCCAAACTCGA 449
Query 551 GATCATGGAACCATGTTGCAGTGTCAAGGATAGGATTGGGTACAGTATGATTACTGATGC 610
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 450 GATCATGGAGCCATGTTGCAGTGTCAAGGATAGGATTGGGTACAGTATGGTTACTGATGC 509
Query 611 TGAAG-AGAAAGGACTTATAACACCTGGAAAGAGTGTTCTTGTGGAATCTACGAGTGGGA 669
||| | | ||||||||||| |||||||||||||||||||||||||| |||| ||||| |
Sbjct 510 TGA-GCAAAAAGGACTTATCGCACCTGGAAAGAGTGTTCTTGTGGAACCTACAAGTGGAA 568
Query 670 ACACAGGG-ATTGGCCTTGCATTCATTGCTGCTTCAAAAGGCTATAAACTTATCTTGACG 728
|||| ||| |||||||| |||||||| |||||||||| |||||||| ||||||||||||
Sbjct 569 ACAC-GGGTATTGGCCTAGCATTCATCGCTGCTTCAAGAGGCTATAGACTTATCTTGACA 627
Query 729 ATGCC-TGCGTCCATGAGTTTGGAAAGGCGGGTTCTTTTGAGGGCATTTGGAGCTGAGCT 787
||||| | ||||||||||| ||||||| |||||||||| | ||||||||||||||||||
Sbjct 628 ATGCCAT-CGTCCATGAGTATGGAAAGAAGGGTTCTTTTAAAGGCATTTGGAGCTGAGCT 686
Query 788 TGTGTTAACTGAACCTGCAAAAGGTATGACTGGAGCAATTCAGAAGGCTGAAGAAATCTT 847
||| ||||| || ||||| ||||| ||||||||||| ||||||||||||||||||| ||
Sbjct 687 TGTATTAACAGATCCTGCTAAAGGCATGACTGGAGCGGTTCAGAAGGCTGAAGAAATTTT 746
Query 848 GaaaaaaaCTCCCAATTCCTACATGCTCCAACAGTTTGACAACCCTGCCAATCCCAAGAT 907
|||||| ||||| || ||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 747 GAAAAACACTCCTGATGCCTACATGCTCCAACAGTTTGACAACCCTGCGAATCCAAAGAT 806
Query 908 TCATTATGAGACGACTGGTCCTGAGATTTGGGAAGATACAAGAGG-CAAAATCGATATAT 966
|||||| ||||| |||||||||||||| ||||||||||||| ||| ||| | |||||||
Sbjct 807 TCATTACGAGACTACTGGTCCTGAGATCTGGGAAGATACAA-AGGGCAAGGTGGATATAT 865
Query 967 TGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGGTGTTGGTCGATTCATTAAAGAAA 1026
| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 866 TTGTTGCAGGAATTGGAACTGGTGGAACTATCACTGGTGTTGGTCGATTTATTAAAGAGA 925
Query 1027 GAAAA-CCTGAATTGAAGGTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGT 1085
|||| || || | ||||||||||||| |||||||| ||||| | |||||||||||||
Sbjct 926 -AAAATCCCAAAACGCAGGTTATTGGTGTAGAACCCACCGAAAGCGATATACTTTCTGGT 984
Query 1086 GGAAAACCCGGACCTCACAAGATTCAAGGAATTGGAGCTGGATTTGTACCCAAGAATTTG 1145
|| ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 985 GGCAAACCAGGACCTCACAAGATTCAAGGAATTGGAGCTGGATTTATACCTAAGAATTTG 1044
Query 1146 GATCTGGCTATTGTAGATGAA-TACATAGCGATTTCCAGTGAGGAAGCTATTGAAACCTC 1204
|||| | ||| | |||||| | |||||||||||| ||||| |||||||| |||||| |
Sbjct 1045 GATCAGAAAATTATGGATGAAGT-CATAGCGATTTCAAGTGAAGAAGCTATAGAAACCGC 1103
Query 1205 GAAGCAACTAGCTCTCCAGGAAGGCTTGTTGGTTGGTATATCTTCTGGAgctgctgctgc 1264
|||||||||||||| ||||||||||| |||| |||||||| |||||||||||||||||
Sbjct 1104 AAAGCAACTAGCTCTTAAGGAAGGCTTGATGGTCGGTATATCATCTGGAGCTGCTGCTGC 1163
Query 1265 tgctgcAATCCAGGTT-GCAAAGAGACCTGAAAATGCCGGGAAACTCATAGCCGTT-GTG 1322
|||||||||| ||| | || ||||||||||| ||||| || ||||||||||| || |||
Sbjct 1164 TGCTGCAATC-AGGGTCGCGAAGAGACCTGAGAATGCTGGAAAACTCATAGCTGTAAGTG 1222
Query 1323 TTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAGTCGATTCGAGAAGAG 1382
|| || ||||||||| || || || || |||| ||| |||||||| || || ||||||
Sbjct 1223 TTTTCG--CTTCGGGGAGCGATATCTATCAACCCCGCTGTTCCAGTCTATCCGGGAAGAG 1280
Query 1383 -TGCGAGCAAATGCAGCCCGAG 1403
|| ||| |||||||||| |||
Sbjct 1281 GTG-GAGAAAATGCAGCCTGAG 1301
> Ahg342794 jgi|Araly1|342794|fgenesh1_pg.C_scaffold_3002557
Length=1035
Score = 115 bits (62), Expect = 9e-25
Identities = 200/265 (75%), Gaps = 16/265 (6%)
Strand=Plus/Plus
Query 766 TGAGGGCATTTGGAGCTGAGCTTGTGTTAACTGAACCTGCAAAAGGTATGACTGGAGCAA 825
||||| | ||||| || |||||||| | ||||| || | ||||| ||| ||||||
Sbjct 368 TGAGGTCCTTTGGTGCAGAGCTTGTCCTCACTGATCCAACCAAAGGAATGGGTGGAGCTG 427
Query 826 TTCAGAAGGCTGAAGAAAT-CTTGaaaaaaaCTCCCAATTCCTACATGCTCCAACAGTTT 884
|| |||| ||| | ||| | |||| | | ||||| || | | ||| | |||||||||
Sbjct 428 TTAAGAAAGCTTATGAACTCCTTG-AGACTACTCCTGATGCTTTTATGTTGCAACAGTTT 486
Query 885 GACAACCCTGCCAATC-C-CAAGATTCATTATGAGACGACTGGTCCTGAGATTTGGGAAG 942
| || || | ||| | | | || |||||||||| |||||||||||||||||||||||||
Sbjct 487 AATAATCCAG-CAAACACTC-AGGTTCATTATGATACGACTGGTCCTGAGATTTGGGAAG 544
Query 943 ATACA-A-GAGGCAAAATCGATATATTGGTTGCGGGGA-TTGGAACTGGTGGAACTA-TC 998
||||| | | || || |||||||||| || | |||| |||| ||||| || || | ||
Sbjct 545 ATACACATG-GG-AATGTCGATATATTCGT-GATGGGAATTGGCACTGGAGGTAC-AGTC 600
Query 999 ACTGGTGTTGGTCGAT-TCATTAAA 1022
||||||||||| ||| || |||||
Sbjct 601 ACTGGTGTTGGGAGATATC-TTAAA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59116060240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5