BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43760.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483491 jgi|Araly1|483491|fgenesh2_kg.4__2551__AT2G43760.3 1314 0.0
> Ahg483491 jgi|Araly1|483491|fgenesh2_kg.4__2551__AT2G43760.3
Length=878
Score = 1314 bits (711), Expect = 0.0
Identities = 814/863 (94%), Gaps = 9/863 (1%)
Strand=Plus/Plus
Query 297 AAAGGTTAGAATTTGCTATCGGATCATCTGCTAAGCTTGGTTTACTCTTCCTAGAACATC 356
||||||||||||||||| | ||||||||||||||||| |||||||| ||||| |||||||
Sbjct 18 AAAGGTTAGAATTTGCTGTTGGATCATCTGCTAAGCTCGGTTTACTTTTCCTGGAACATC 77
Query 357 GATTGTATCGAGG-T--T-TACTATTGGATCAAAGATGTCTGCAGAGGAGAAGAACCTTA 412
|||||||| |||| | | | |||||||| ||||||||||||||||||||| |||||||
Sbjct 78 GATTGTATTGAGGTTCCTGTTGTATTGGATTAAAGATGTCTGCAGAGGAGAAAAACCTTA 137
Query 413 TAGAGATCTTGGAGGAAGGTCACAAAGTCGATGTTGTTAAGTACATTGATTATGTCAGTG 472
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 138 TAGAGATCTTGGAGGAAGGTCACACAGTCGATGTTGTTAAGTACATTGATTATGTCAGTG 197
Query 473 CCCCTCAAGCTGGTGCTATTGCGACATTCTCAGGCACTACAAGAGACATGTTCGAGGGCA 532
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 198 CCCCTCAAGCTGGTGCTATAGCGACATTCTCAGGCACTACAAGAGACATGTTCGAGGCCA 257
Query 533 AGACAGTGTTGGAGTTAAGGTATGAAGCATATGTGCCAATGGCCACACGATGCCTCAGCT 592
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 258 AGACTGTGTTGGAGCTAAGGTATGAAGCATATGTGCCAATGGCCACACGATGCCTCATCT 317
Query 593 CGATCTGTACAACTGCTAGATCAACTTGGGATATCCACAAGATTGCTGTTGCTCACCGTC 652
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 318 CGATCTGTACAACTGCTAGATCAACTTGGGATATCCACAAGATTGCGGTTGCTCACCGTC 377
Query 653 TTGGACCAGTTCCTGTTGGAGAAACTAGCGTGCTCATTGCGGTCTCATCTGTTCACCGTG 712
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 378 TGGGACCAGTTCCTGTTGGAGAAACTAGCGTGTTCATTGCGGTCTCATCTGTTCACCGTG 437
Query 713 CAGATGGTTTAGATGCTTGCAAGTTCTTGATCGACGAGTTGAAGGCATCGGTTCCGATAT 772
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 438 CTGATGGTTTAGATGCTTGCAAGTTCTTGATTGACGAGTTGAAGGCATCGGTTCCGATAT 497
Query 773 GGAAGAAAGAGGTTTACACTAATGGAGAGATTTGGAAGGAGAATTCTGAGTTTATGGAGA 832
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 498 GGAAGAAAGAGGTTTACACTAATGGAGAGATTTGGAAGGAGAACTCTGAGTTTATGGAGA 557
Query 833 AAAGATTGGAGCTTGCAGAGAAAAGAGACAGCATTGTaaaaaaaaCTGTGGTTGAAGAAC 892
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 558 AAAGATTGGAGCTTGCAGAGAAAAGAGACAGCATTGTAAAAAAACCTGTGGTTGAAGAAC 617
Query 893 ATAGAAGAAGAGGTTGCTGTGGAAGCAAAGTTAGAGTAGAAGAAGATGAAGAGCATAAAG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 ATAGAAGAAGAGGTTGCTGTGGAAGCAAAGTTAGAGTAGAAGAAGATGAAGAGCATAAAG 677
Query 953 ATATTACAGGAGATAACAAATCTTCTTCTTGATCACTTGTAGCAGTA-A-CACTGTTTCG 1010
||||||||||||||||||||||||||||||||| |||||||||| | | || |||||||
Sbjct 678 ATATTACAGGAGATAACAAATCTTCTTCTTGATTACTTGTAGCAA-AGAGCAATGTTTCG 736
Query 1011 CTTTTTACTTTCAATAGACAAACTTTCTTAAGCACATTGTTGAATCTAAAGACTT-ATAT 1069
|||||||| ||| || ||||| | |||||||||||||||||||||||||||||| ||||
Sbjct 737 TTTTTTACTCTCAGTAAACAAAATGTCTTAAGCACATTGTTGAATCTAAAGACTTCATAT 796
Query 1070 GCGTTAGTTGGTTACTGGACTGGGCTTATACTTGCTACTGCTTGAATCTGTAAGAATCTA 1129
|||||||||||| | | ||||||| |||||||||||||||||| |||||||||||| |
Sbjct 797 GCGTTAGTTGGTGCCAG-ACTGGGCATATACTTGCTACTGCTTGGATCTGTAAGAATGAA 855
Query 1130 ATCGAAGATACTGCAAGATTGTA 1152
| |||||||||||||||||||||
Sbjct 856 AACGAAGATACTGCAAGATTGTA 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5