BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43780.1

Length=661
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935294 jgi|Araly1|935294|scaffold_403282.1                        540    5e-153


> Ahg935294 jgi|Araly1|935294|scaffold_403282.1
Length=413

 Score =  540 bits (292),  Expect = 5e-153
 Identities = 384/425 (90%), Gaps = 19/425 (4%)
 Strand=Plus/Plus

Query  176  AGGTTAAAGACTTTGAAGTAATGGCGGGATTTCCAGGTTTTAGTTACCTAGG-CCCAAAA  234
            ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct  1    AGGTTAAAGACTTTGAAGTAATGGCGGGATTTCCAGGTTTTAGTTACCTTGGTCCTAAAA  60

Query  235  GGCAAGAACACGGTTGTAGCTGGTGGCTTGACAGCTTTTGTTTTTGGGGTATACTTCTAC  294
             |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  61   -GCAAGAACACAGTTGTAGCGGGTGGCTTGACAGCTTTTGTTTTTGGGGTATACTTCTAC  119

Query  295  ACAATGAGGGCGGTTGGTGGCACAGACGAGCTTCAAGTGGCTATAGACAAGTTCGAAGGC  354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  ACAATGAGGGCGGTTGGTGGCACAGACGAGCTTCAAGTGGCTATAGACAAGTTCGAAGGC  179

Query  355  CAAAAACAGGTGGACACTGACACCAAGGTTCCATCTAAGGTCTAATCCTCACTGGCTTGA  414
            ||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct  180  CAAAAACAGGTTGACACCGACACCAAGGTTCCATCAAAGGTCTAATCCTCGCTGGCCTGA  239

Query  415  TATGTCCAACCAAACCCGTTATTTATCTTTG-CTTTCCAAGCTTCTTTTGTCACGAAAGT  473
            |||||||||| | ||  ||| |||||||||| ||| ||||| || ||||   ||   |  
Sbjct  240  TATGTCCAACGAGACTTGTTTTTTATCTTTGTCTT-CCAAG-TT-TTTT---ACTTCA--  291

Query  474  GGCTCGTTTCTGACATCGAGTGGCATCTGTGTTT-GAGTCTCAGTCCAATC--TA--TAA  528
              | |||||||||| | || |||||||||||||| ||||||||||||||||  ||  |||
Sbjct  292  --C-CGTTTCTGACCTTGATTGGCATCTGTGTTTCGAGTCTCAGTCCAATCCATACATAA  348

Query  529  TACATTGATTAAACAAGAGAATGTATGATCAGGACATGGTTTTGATGTTCTTGACATTGT  588
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  349  TACATTGGTTAAACAAGAGAATGTATGATCAGGACATGGTTTTGATGTTCTTGACATCGT  408

Query  589  CTTAA  593
            |||||
Sbjct  409  CTTAA  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24246175212


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5