BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43790.1
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935295 jgi|Araly1|935295|scaffold_403283.1 2037 0.0
> Ahg935295 jgi|Araly1|935295|scaffold_403283.1
Length=1237
Score = 2037 bits (1103), Expect = 0.0
Identities = 1195/1238 (97%), Gaps = 11/1238 (1%)
Strand=Plus/Plus
Query 151 AGCTTTCATCTTTACCGGTCATGGACGGTGGTTCAGGTCAACCGGCGGCTGATACAGAGA 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGCTTTCATCTTTACCGGTCATGGACGGTGGTTCAGGTCAACCGGCGGCTGATACAGAGA 60
Query 211 TGACAGAAGCTCCT-GGAGGTTTTCCCGCGGCGG------CT---CCATCGCCTCAGATG 260
|||| |||||| || || ||| |||||||||||| || |||||||||||||||
Sbjct 61 TGACGGAAGCT-CTCGGTGGTGTTCCCGCGGCGGCTCCTTCTCAGCCATCGCCTCAGATG 119
Query 261 CCTGGGATTGAGAATATTCCGGCGACTCTTAGCCATGGTGGTAGGTTTATTCAGTATAAC 320
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCCGGTATTGAGAATATTCCGGCGACTCTTAGCCATGGTGGTAGGTTTATTCAGTATAAC 179
Query 321 ATATTTGGAAACATCTTCGAGGTCACCGCTAAGTATAAGCCTCCGATCATGCCTATTGGC 380
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATATTTGGAAACATCTTTGAGGTCACCGCTAAGTATAAGCCTCCGATCATGCCTATTGGC 239
Query 381 AAGGGTGCTTATGGCATCGTTTGTTCGGCTATGAATTCTGAAACTAACGAGAGCGTTGCG 440
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 240 AAGGGTGCTTATGGCATCGTTTGTTCGGCTATGAACTCTGAAACAAATGAGAGCGTTGCA 299
Query 441 ATTAAGAAAATTGCTAACGCTTTTGACAATAAGATTGATGCTAAGAGGACTCTCCGTGAG 500
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 ATTAAGAAAATCGCTAACGCTTTTGACAATAAGATTGATGCAAAGAGGACTCTCCGTGAG 359
Query 501 ATCAAGCTGCTTCGTCACATGGATCATGAAAATATTGTTGCAATCAGAGATATTATCCCG 560
|| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 ATTAAACTGCTTCGTCATATGGATCATGAAAATATTGTTGCAATCAGAGATATAATCCCG 419
Query 561 CCACCATTAAGAAACGCTTTCAACGATGTTTACATCGCGTATGAGTTAATGGACACTGAT 620
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 CCACCATTAAGAAACGCTTTCAACGATGTTTACATCGCGTATGAGCTAATGGACACTGAT 479
Query 621 CTCCATCAAATCATTCGGTCAAATCAAGCATTATCCGAAGAACATTGCCAGTATTTTCTT 680
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTCCATCAAATCATACGGTCAAATCAAGCATTATCCGAAGAACATTGCCAGTATTTTCTT 539
Query 681 TACCAGATCCTCCGTGGATTGAAATACATTCACTCTGCAAATGTGCTTCACAGGGATTTG 740
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 540 TACCAGATCCTCCGTGGATTGAAATACATTCATTCCGCAAATGTGCTTCACAGGGATTTG 599
Query 741 AAACCAAGTAATCTCCTCCTGAACGCAAACTGCGACCTAAAAATCTGCGATTTTGGGCTA 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAACCAAGTAATCTCCTCCTGAACGCAAACTGCGACCTAAAAATCTGCGATTTTGGGCTA 659
Query 801 GCTCGAGTCACTTCTGAGAGTGATTTCATGACTGAATATGTTGTCACGAGATGGTACCGT 860
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCTCGAGTCACTTCCGAGAGTGATTTCATGACTGAATATGTTGTCACGAGATGGTACCGT 719
Query 861 GCACCAGAGCTTCTCTTAAACTCTTCTGATTATACTGCAGCTATCGATGTTTGGTCTGTA 920
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCACCAGAGCTGCTCTTAAACTCTTCTGATTATACTGCAGCTATCGATGTTTGGTCTGTA 779
Query 921 GGCTGTATTTTCATGGAGTTAATGGACCGTAAGCCACTCTTCCCTGGACGAGATCATGTC 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGCTGTATTTTCATGGAGTTAATGGACCGTAAGCCACTCTTCCCTGGACGAGATCATGTC 839
Query 981 CATCAGCTTCGCTTGCTCATGGAGCTCATAGGAACTCCATCAGAAGAAGAGCTCGAGTTC 1040
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 840 CATCAGCTTCGCTTGCTCATGGAGCTCATAGGAACTCCATCAGAAGCAGAGCTTGAGTTC 899
Query 1041 TTGAACGAAAACGCAAAGCGATACATAAGACAGCTTCCACCTTATCCTCGCCAATCCATC 1100
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTGAACGAAAATGCAAAGCGATACATAAGACAGCTTCCACCTTATCCTCGCCAATCCATC 959
Query 1101 ACTGATAAGTTCCCGACAGTGCATCCTTTAGCTATAGACCTTATCGAGAAGATGTTAACA 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACTGATAAGTTCCCGACAGTGCATCCTTTAGCTATAGACCTTATCGAGAAGATGTTAACA 1019
Query 1161 TTTGATCCTAGACGGAGAATCACAGTTTTAGACGCATTGGCCCATCCATACCTGAACTCG 1220
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTTGATCCTAGACGGAGAATCACAGTTTTAGACGCATTGGCCCATCCATACCTGAACTCA 1079
Query 1221 TTGCACGACATAAGCGATGAGCCAGAGTGTACAATACCTTTCAACTTTGATTTTGAAAAC 1280
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1080 TTGCACGACATAAGCGATGAGCCAGAGTGTACGATACCTTTCAACTTTGACTTTGAAAAC 1139
Query 1281 CATGCACTCTCAGAGGAGCAGATGAAGGAACTAATCTACCGCGAGGCGCTTGCTTTCAAT 1340
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1140 CATGCACTCTCAGAGGAGCAAATGAAGGAACTTATCTACCGCGAGGCGCTTGCTTTCAAT 1199
Query 1341 CCAGAATATCAGCAATAGTTTGAAGAACAGCATTTGGG 1378
||||||||||||||||| ||| ||||||||||||||||
Sbjct 1200 CCAGAATATCAGCAATAATTTAAAGAACAGCATTTGGG 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61972828615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5