BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43795.2

Length=774
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg902397 jgi|Araly1|902397|Al_scaffold_0004_3047                    608    2e-173


> Ahg902397 jgi|Araly1|902397|Al_scaffold_0004_3047
Length=456

 Score =  608 bits (329),  Expect = 2e-173
 Identities = 410/449 (91%), Gaps = 6/449 (1%)
 Strand=Plus/Plus

Query  71   ATGGATGGTTCATTTCATTCACCAGAATGGCATGCAGCTCGTTTGGCCAGTCTCAAGACT  130
            |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct  1    ATGGATGGTTCATTTCATACACCAGAATGGCATGCTGCTCGTTTGGCCAGTCTCAAGACT  60

Query  131  ACACACACTCTTACTTGGgaagaatata-agcagaagcaaaaggaagaagaattgaaaaa  189
            |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct  61   ACACACACTCTTACTTGGGAAGAATATAGA-CAGAAGCAAAAGGAAGAAGAACTGAAAAA  119

Query  190  gcaagaagtcgaagcagaTACCGATAAATTGATGCGTGAGTATAGAGCTCAGCTAGATGC  249
            |   ||| | ||||||||||||||||  |||||||||||||||||||||||||| |||||
Sbjct  120  GGTTGAACTTGAAGCAGATACCGATATGTTGATGCGTGAGTATAGAGCTCAGCTGGATGC  179

Query  250  TGAAAGGGCAATGAAGCTCTCTAAGGGAAGGAACTATTCTAGTGACATATCCAGGAAAG-  308
            |||||| ||||||||||||||||||||||||||||||||||| || | ||||| ||||| 
Sbjct  180  TGAAAGAGCAATGAAGCTCTCTAAGGGAAGGAACTATTCTAGCGATAGATCCACGAAAGA  239

Query  309  --G-AAGgagagagagctcacagatagaaagtgcagagattccaagaggaagaaaagcaa  365
              | ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct  240  TAGGAAGGAGAGAGAGCTCACAGATAGAAAGGGCAGAGATTCGAAGAGGAAGAGAAGCAA  299

Query  366  aaagagaaagCATTCGAAAAGGCGATCATCAGACTCAAGCTCATCTTCTGAATCTTCAAG  425
            ||||||||||||||||| |||| ||||||| |||||||||||||| || ||||| |||||
Sbjct  300  AAAGAGAAAGCATTCGAGAAGGGGATCATCTGACTCAAGCTCATCCTCCGAATCATCAAG  359

Query  426  TAGTGACAAAGACGAATCTAGGAAGTCAAGGTCAAGTTCTAAGAGGCCAAAGAGGGAGAG  485
            ||||||| |||| |||| |||||| ||||||||||||||||| || ||||| ||||||||
Sbjct  360  TAGTGACGAAGAGGAATTTAGGAAATCAAGGTCAAGTTCTAAAAGACCAAAAAGGGAGAG  419

Query  486  GAAACACAAGTCTAGAGGCAGACACTCAA  514
            |||||||||||||||||||||||| ||||
Sbjct  420  GAAACACAAGTCTAGAGGCAGACATTCAA  448



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28554064833


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5