BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43800.1
Length=2861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483497 jgi|Araly1|483497|fgenesh2_kg.4__2557__AT2G43800.1 4231 0.0
> Ahg483497 jgi|Araly1|483497|fgenesh2_kg.4__2557__AT2G43800.1
Length=2832
Score = 4231 bits (2291), Expect = 0.0
Identities = 2673/2852 (94%), Gaps = 48/2852 (2%)
Strand=Plus/Plus
Query 15 CTTCTGCTTCCTCTTTGTAGCTTTCTTCTTCTCTTCCTCCACCGCCGATCAACGTCACCA 74
||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 24 CTTCTGCTTACTCTTTGTAGCTTTCTTCTTCTCTTCCTCCGCCGCCGATCAACGTTTCCA 83
Query 75 CTCTCGTCACTTACTTCACCAACCCTTTTTCCCGGTCGTAACCGCCGCTCCACCACCGTA 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 CTCTCGTCACTTACTTCACCAACCCTTTTTCCCGGTCGTAACCGCCGCTCCACCACCGTA 143
Query 135 TCAACCACCCGTCTCTTCCCAACCTCCATCTCCTTCCCCACACACACATCACCACCACAA 194
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 TCAACCACCGGTCTCTTCCCAACCTCCATCTCCTTCCCCACACACACATCACCACCACAA 203
Query 195 GAAACACCTAACGACGACGA-CGCCACCACCTCACGAGAAACATCTTTTCTCCTCCGTAG 253
|||||| ||| ||||| | | | |||||||| ||||||||||| || ||||||||||| |
Sbjct 204 GAAACAACTAGCGACG-CCACCACCACCACCGCACGAGAAACACCTATTCTCCTCCGTCG 262
Query 254 CAAATCCTCCACCTCCTCCGCCGTCTCCGCCGCATCCAAACCCTTTTTTCCCTTCATCAG 313
||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 263 CAAATCCTCCACCTCCTCCGCCGTCTCCGCCGCGTCCAAACCCTTTTTTCCCCTCGTCAG 322
Query 314 ACCCAACTTCCACCGCCTCTCACCCTCCTCCAGCACCACCTCCTCCGGCCTCACTCCCAA 373
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 323 ACCCAACCTCCACCGCCTCTCACCCTCCTCCAGCACCACCTCCTCCTGCCTCGCTCCCGA 382
Query 374 CTTTTCCCGCCAACATCTCTTCCCTTCTCTTTCCGACTCACAACAAACAATCCAAGCCTC 433
||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||
Sbjct 383 CTTTTCCCGCCAACATCTCTTCCCTCCTCTTTCCAACTCACAACAAACCATCCAAGCCTC 442
Query 434 CCAGCAACGGCCACATCGCTAGGCTCGTCACCATAACCGCCTCCGTCATCTCCGCCGCTG 493
|||||||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 443 CCAGCAACGGCCACCTCGCTAGGCTCGTCACCATAACCGCCTCGGCCATCTGCGCCGCTG 502
Query 494 CTCTCCTCTCTCTATTCGCCGTCTTCATCATCTTCATCCGCCGAACTCGCCACCGCCGCC 553
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 503 CTCTCCTCTCTCTATTCGCCGTCTTCATCATCTTCATACGCCGAACCCGCCATCGCCGCC 562
Query 554 GCTCCTCCCCTGCAGACGACACCAAATCCACGAGATCAGACGCTCTTCAGCTCTTCAACG 613
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 563 GCTCCTCCCCTGCAGACGACACCAAAGCCACGAGATCAGATGCTCTTCAGCTCTTCAACG 622
Query 614 CCTCTCCTTCCGACGGCTCTAAGAAACAGAAACAACATCAACAACCACCAAAGTACACTT 673
| ||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 623 CATCTCCTTCCGACGGCACTAAGAAACACAAACAACATCAACAACCACCGAAGTACACTT 682
Query 674 CCTCACACACTTCCTCTGAGTTTCTCTACTTAGGTACTTTAGTAAACTCTC-GAAGCAAT 732
||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |
Sbjct 683 CCTCACACACTTCCTCTGAGTTTCTCTACTTGGGTACTTTAGTAAACTC-CAGAAGCGGT 741
Query 733 GGTTTAGAGCAGCAAAAGTCTCCAATCTCCCTCTCTGGCGGTATCACCGGCGTATTGGAA 792
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 742 GGTTTAGAACAGCAAAAATCTCCAATCTCCCTCTCCGGCGGTATCACCGGCGTATTGGAA 801
Query 793 TTACCTCCTCCAGCTTCGTCGTCTTCTTCTTCTTCTTACTCACAGTACCATAAGCTAGGC 852
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 802 TTACCTCCTCCAGCTTCGTCGTCTTCTTCCTCTTCTTACTCACAGTACCATAAGCTAGGC 861
Query 853 TCGCCAGAGCTTCGTCCTCTTCCCCCTTTACCAAAGCTCCAATCTTTCACTCCCGTTTAC 912
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 862 TCGCCGGAGCTTCGTCCTCTTCCCCCTTTACCAAAGCTCCAATCTTTCACTCCCGTCTAC 921
Query 913 AAAAGCACTGAACAGTTAAACCCTAAAAGACAAGACTTTGACGGAGACGATAACGAAAAC 972
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 922 AAAAGCACTGAACAGTTAAACCCTAAAAGACAATACTTTGACGGAGACGATAACGAAAAC 981
Query 973 GATGAGTTTTTCTCTCCGAGAGGATCTTCAGGGCGTAAACAGAGCCCGACCCGTGTCTCT 1032
|||||||||||||||||||||||||||||||||||| | | | | | |
Sbjct 982 GATGAGTTTTTCTCTCCGAGAGGATCTTCAGGGCGT--A-A-A---C-A-----G----- 1023
Query 1033 GATGTTGATCAGATTGACAACAGGAGTATCAACGGCTCAGGCTCGAACTCGTGTTCGCCG 1092
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GATGTTGATCAGATTGGTGACAGGAGTATCAACGGCTCAGGCTCGAACTCGTGTTCGCCG 1083
Query 1093 ACTAATTTTGCGCCGTCGTTGAATGCTTCTCCGGGAACAAGTTTGAAACCTAAGTCAATT 1152
||||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1084 ACTAATTCAGTGCCGTCGTTGAATGCTTCTCCGGGAACAAGTTTGAAACCTAAGTCGACT 1143
Query 1153 AGTCCTCCTGTCTCGCTGCACAGTCAGATA-AGCTCAAACAACGGCATTCCGAAGCGGCT 1211
||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 1144 AGTCCTCCTCTCTCGCTGCACAGTCAGA-ACAGCTCAAACAACGGCGTTCCGAAGCGGCT 1202
Query 1212 TTGTCCAGCGAGGCCACCTCCACCACCTCCTCCGCCGCCACAGGTCTCGGAGGTTCCGGC 1271
||||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||
Sbjct 1203 TTGTCCAGCGAGGCCACCTCCACCACCTCCTCCGCCGCCGCAATTCTTGGAGATTCCGGC 1262
Query 1272 TACTATGTCGCATTC-CCTTCCTGGTGATGATTCTGACCCAGAGAAGAAAGTGGAGACCA 1330
|||||||||||| || || |||||||| |||||||||||||||||||||||||||| ||
Sbjct 1263 TACTATGTCGCACTCGCC-TCCTGGTGGGGATTCTGACCCAGAGAAGAAAGTGGAGAGCA 1321
Query 1331 TGAAACCAAAGTTGAAGACTTTACATTGGGATAAAGTTAGAGCAAGCTCGAGCCGTGTTA 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1322 TGAAACCAAAGTTGAAGACTTTACATTGGGATAAAGTTAGAGCAAGCTCGAGCCGTGCTA 1381
Query 1391 TGGTGTGGGACCAAATCAAATCAAACTCCTTTCAAGTGAATGAAGAAATGATAGAGACAT 1450
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1382 TGGTGTGGGACCAAATCAAATCAAACTCCTTTCAAGTGAATGAAGAAATGATAGAGACCT 1441
Query 1451 TGTTCAAGGTGAATGATCCAACTTCGAGAACAAGAGATGGCGTTGTTCAATCCGTGAGTC 1510
||||||||| ||||||| ||| ||| ||||||||||||||| |||||||||||| | ||
Sbjct 1442 TGTTCAAGGCGAATGATACAAATTCAAGAACAAGAGATGGCCTTGTTCAATCCGCCAATC 1501
Query 1511 AGGAGAATCGGTTTCTTGATCCAAGAAAGTCACACAACATTGCTATTTTGTTGAGAGCTC 1570
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 1502 AGGAGAATCGGTTTCTTGACCCAAGAAAGTCACACAACATTGCCATTTTGCTGAGAGCTC 1561
Query 1571 TTAATGTAACTGCTGATGAAGTATGTGAAGCTCTTATAGAAGGTAACTCGGATACGCTTG 1630
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1562 TTAATGTAACTGCTGATGAAGTATGTGAAGCTCTTGTAGAAGGCAACTCGGATACGCTTG 1621
Query 1631 GACCCGAGCTTCTCGAATGCTTGCTTAAGATGGCTCCTACTAAAGAAGAAGAGGACAAGC 1690
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1622 GACCCGAGCTTCTCGAATGCTTGCTTAAGATGGCTCCTACCAAAGAAGAAGAGGACAAGC 1681
Query 1691 TTAAGGAGCTTAAAGATGATGATGATGGATCTCCTTCCAAGATAGGACCTGCAGAGAAAT 1750
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 TTAAGGAGCTTCAAGACAATGATGATGGATCTCCTTCCAAGATAGGACCTGCAGAGAAAT 1741
Query 1751 TCCTCAAAGCATTGTTGAACATTCCTTTCGCCTTCAAGAGGATTGATGCAATGCTTTACA 1810
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1742 TCCTCAAAGCATTGTTGAACATTCCTCTCGCCTTCAAGAGGATTGATGCAATGCTTTACA 1801
Query 1811 TTGTCAAGTTCGAATCAGAAATCGAGTACCTTAACAGATCCTTCGACACTCTCGAGGCTG 1870
| ||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||
Sbjct 1802 TAGTCAAGTTCGAATCAGAAACCGAGTACCTTAACAAATCCTTCGACACCCTGGAGGCTG 1861
Query 1871 CTACTGGTGAGTTAAAGAACACGCGGATGTTCTTGAAGCTTTTAGAAGCCGTGCTCAAGA 1930
|| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1862 CTTCTGGTGAGTTAAAGAACACGCGGATGTTCTTGAAGCTTTTAGAAGCAGTACTCAAGA 1921
Query 1931 CTGGGAACCGGATGAATATAGGAACCAATAGAGGGGACGCACATGCTTTCAAGCTCGACA 1990
| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1922 CCGGGAACCGGATGAATATAGGAACCAATAGAGGTGATGCACATGCGTTCAAGCTCGACA 1981
Query 1991 CGCTCTTAAAACTGGTAGATATCAAAGGCGCGGATGGGAAAACCACCTTATTGCATTTTG 2050
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1982 CACTCTTAAAACTGGTAGATATCAAAGGCGCGGATGGGAAAACCACCTTATTGCATTTTG 2041
Query 2051 TGGTTCAAGAGATCATAAAATTTGAAGGAGCTCGGGTTCCTTTTACTCCGAGTCAAAGCC 2110
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 2042 TGGTTCAAGAGATCATAAAATTTGAAGGTGCTCGGGTTCCTTTTACTCCGACTCAAAGCC 2101
Query 2111 ATATAGGCGATAACATGGCCGAGCAATCCGCATTCCAAGATGACCTAGAGCTCAAGAAAC 2170
|||||||| || |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2102 ATATAGGCAATGACATGGCCGAGCAATCGGCATTCCAAGACGACCTAGAGCTCAAGAAAC 2161
Query 2171 TCGGGTTGCAAGTCGTTTCAGGTCTCAGCTCTCAGCTGATTAACGTCAAGAAAGCAGCGG 2230
| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 2162 TGGGGTTGCAAGTAGTTTCAGGTCTCAGCTCTCAGTTGATTAACGTTAAGAAAGCAGCTG 2221
Query 2231 CAATGGATTCAAATTCCCTCATCAACGAAACAGCGGAAATC-GCCAGAGGAATAGCGAAA 2289
||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 2222 CAATGGATTCAAATTCCCTCATCAACGAAACAGCGGAAA-CAGCCAGCGGAATAGCGAAA 2280
Query 2290 GTCAAGGAAGTAATCACGGAGCTAAAGCAAGAAACAGGTGTAGAGAGATTCTTGGAGTCA 2349
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 GTCAAGGAAGTAATTGCGGAGCTAAAGCAAGAAACAGGTGTAGAGAGATTCTTGGAGTCA 2340
Query 2350 ATGAACTCGTTCTTGAACAAAGGTGAGAAAGAGATCACAGAGTTACAATCTCATGGAGAC 2409
||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 2341 ATGAACTTGTTCTTGAACAAAGCTGAGAAAGAGATCACAGAGATACAATCTCATGGAGAC 2400
Query 2410 AATGTCATGAAGATGGTTAAAGAAGTAACAGAGTATTTCCACGGGAACTCGGAAACTCAT 2469
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2401 AATGTGATGAAGATGGTTAAAGAAGTAACAGAGTATTTCCACGGGAACTCGGAAACTCAT 2460
Query 2470 CCTTTTCGCATTTTCGCTGTGGTCAGAGACTTTCTGACGATTCTTGATCAAGTGTGTAAA 2529
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 CATTTTCGCATTTTCGCTGTGGTCAGAGACTTTCTGACGATTCTTGATCAAGTGTGTAAA 2520
Query 2530 GAAGTTGGACGCGTAAACGAGAGAACGGTGTATGGATCCATGCCACTACATTCGCCATCG 2589
|||||||||||||| || |||||||||||||| |||||| |||||| |||||||||||||
Sbjct 2521 GAAGTTGGACGCGTTAATGAGAGAACGGTGTACGGATCCGTGCCACGACATTCGCCATCG 2580
Query 2590 AACCAGACCGCCACGCCTCTGTTTCCGGTGGTTATCAATAACAACTCACGGCTAAGTCCA 2649
|||||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||
Sbjct 2581 AACCAGACCGCCACGCCTCTGTTTCCTGTGGTTAACAATAACAACTCACGTCTGAGTCCA 2640
Query 2650 TCGGGTTCTCTAGACGACGACGATGGCTCGTTCTAAGTGAAAACTGTTGGCTCGGGTTTG 2709
||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| |||||
Sbjct 2641 TCGGGTTCTCTAGACGAGGACGATGACTCGTTTTAAGTGAAAACTGTTGGCTCGAGTTTG 2700
Query 2710 GTTCGGTGTATGCTAATGTTTTGGTTTCATTTGCTACGTACTCAAGTAATATATGTGTTA 2769
|||||||||||||||||||||||||||||||||||||||||||||| | ||| | | |
Sbjct 2701 GTTCGGTGTATGCTAATGTTTTGGTTTCATTTGCTACGTACTCAAG-A-TAT-T-T---A 2753
Query 2770 TACATATTTATATTTTTATTGATAGGCGAATTTAAATAGATTTTGGCAGATTGTTGCAAG 2829
|| | ||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 2754 TA--T-TTT-TATT------GATAGGCGAATTTAAATAGATTTTGGCTGATTGTTGCAAG 2803
Query 2830 TTGCTATCATCGGGCTCTGTACGTGTTCCAGT 2861
|||||||| |||||||||||||||||||||
Sbjct 2804 TTGCTATC---GGGCTCTGTACGTGTTCCAGT 2832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107985844575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5