BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43810.1

Length=842
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935298 jgi|Araly1|935298|scaffold_403286.1                        496    1e-139
  Ahg486445 jgi|Araly1|486445|fgenesh2_kg.5__2437__AT3G59810.1         315    5e-85 


> Ahg935298 jgi|Araly1|935298|scaffold_403286.1
Length=317

 Score =  496 bits (268),  Expect = 1e-139
 Identities = 301/317 (95%), Gaps = 1/317 (0%)
 Strand=Plus/Plus

Query  132  TGGTTTCT-TAGCAAAGAAGATGAGTGGAGTTGGAGAGAAAGCTTCTGGAACAACTAAGA  190
            ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1    TGGTTTCTAAAGCAGAGAAGATGAGTGGAGTTGGAGAGAAAGCTTCTGGAACAACTAAAA  60

Query  191  CACCTGCTGATTTCTTGAAATCTATCCGTGGTAAACCAGTTGTTGTCAAGCTCAACTCTG  250
            ||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct  61   CACCTGCTGATTTCTTGAAGTCTATCCGTGGTAAACCAGTTGTTGTGAAACTCAACTCTG  120

Query  251  GTGTTGATTATCGAGGCATTCTTACTTGTCTTGATGGATATATGAACATCGCAATGGAGC  310
            |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct  121  GTGTTGATTATCGAGGCATTCTCACTTGTCTTGATGGGTATATGAACATCGCAATGGAGC  180

Query  311  AAACCGAAGAGTATGTAAATGGCCAGCTGAAGAACACATATGGCGACGCTTTTGTCCGTG  370
            ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  181  AAACCGAAGAGTACGTAAATGGCCAGCTAAAGAACAAATATGGCGACGCTTTTGTCCGTG  240

Query  371  GCAACAATGTTCTTTACATCAGCACAACAAAGGGGACATTGTCAGATGGAGCATAGCTCT  430
            |||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct  241  GCAACAATGTTCTTTACATCAGCACAACGAAGGGGACCTTGTCAGATGGAGCCTAGCTCT  300

Query  431  CTTTCATCACCATGAAT  447
            |||||| ||||||||||
Sbjct  301  CTTTCAACACCATGAAT  317


> Ahg486445 jgi|Araly1|486445|fgenesh2_kg.5__2437__AT3G59810.1
Length=469

 Score =  315 bits (170),  Expect = 5e-85
 Identities = 222/248 (90%), Gaps = 0/248 (0%)
 Strand=Plus/Plus

Query  145  AAGAAGATGAGTGGAGTTGGAGAGAAAGCTTCTGGAACAACTAAGACACCTGCTGATTTC  204
            |||||||||||||| ||||||||||||| ||||||||| || ||||||||||| ||||||
Sbjct  96   AAGAAGATGAGTGGTGTTGGAGAGAAAGTTTCTGGAACGACAAAGACACCTGCAGATTTC  155

Query  205  TTGAAATCTATCCGTGGTAAACCAGTTGTTGTCAAGCTCAACTCTGGTGTTGATTATCGA  264
             | ||||| |||||||| | ||| ||||||||||||||||| ||||||||||||||||||
Sbjct  156  CTCAAATCCATCCGTGGGAGACCCGTTGTTGTCAAGCTCAATTCTGGTGTTGATTATCGA  215

Query  265  GGCATTCTTACTTGTCTTGATGGATATATGAACATCGCAATGGAGCAAACCGAAGAGTAT  324
            ||||||||||||||||||||||| ||||||||||| ||||||||||| || || ||||||
Sbjct  216  GGCATTCTTACTTGTCTTGATGGGTATATGAACATAGCAATGGAGCAGACAGAGGAGTAT  275

Query  325  GTAAATGGCCAGCTGAAGAACACATATGGCGACGCTTTTGTCCGTGGCAACAATGTTCTT  384
            |||||||| ||||| ||||||| |||||| || || ||| ||||||| ||||| ||||||
Sbjct  276  GTAAATGGGCAGCTCAAGAACAAATATGGTGATGCCTTTATCCGTGGAAACAACGTTCTT  335

Query  385  TACATCAG  392
            ||||||||
Sbjct  336  TACATCAG  343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31146423189


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5