BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43820.1
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483498 jgi|Araly1|483498|fgenesh2_kg.4__2558__AT2G43820.1 2170 0.0
Ahg483500 jgi|Araly1|483500|fgenesh2_kg.4__2560__AT2G43840.1 1393 0.0
> Ahg483498 jgi|Araly1|483498|fgenesh2_kg.4__2558__AT2G43820.1
Length=1408
Score = 2170 bits (1175), Expect = 0.0
Identities = 1311/1377 (95%), Gaps = 8/1377 (1%)
Strand=Plus/Plus
Query 67 agGACATGTATTAGCAGTGCCGTACCCAACGCAAGGACACATCACACCATTCCGCCAATT 126
||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct 36 AGGACATGTATTAGCAGTGCCATATCCAACGCAAGGACACATCACACCAATCCGCCAATT 95
Query 127 CTGCAAACGACTTCACTTCAAAGGTCTCAAAACCACTCTCGCTCTCACCACTTTCGTCTT 186
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 CTGCAAACGACTTCACTCCAAAGGTCTCAAAACCACTCTCGCTCTCACCACTTTCGTCTT 155
Query 187 CAACTCCATCAATCCTGACCTATCCGGTCCAATCTCCATAGCCACCATCTCCGATGGCTA 246
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 156 CAACTCCATCAAACCTGACCTATCTGGTCCAATCTCCATAGCCACCATCTCCGACGGCTA 215
Query 247 TGACCATGGGGGTTTCGAGA-CAGCTGACTCCATCGACGACTACCTC-AAAGACTTTAAA 304
|||||||||||||||||| | |||||| |||||||| |||||||||| ||| ||||||||
Sbjct 216 TGACCATGGGGGTTTCGA-ATCAGCTGGCTCCATCGCCGACTACCTCGAAA-ACTTTAAA 273
Query 305 ACTTCCGGCTCGAAAACCATTGCAGACATCATCCAAAAACACCAGACTAGTGATAACCCC 364
||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 274 ACTTCGGGCTCGAAAACCATTGCAGACATCATCCGCAAACACCAGACTAGTGATAGCCCC 333
Query 365 ATCACTTGTATCGTCTATGATGCTTTCCTGCCTTGGGCACTTGACGTTGCTAGAGAGTTT 424
||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 334 ATCACTTGTATTGTCTATGATGCTTTCATGCCTTGGGCACTTGACATTGCTAGAGAGTTT 393
Query 425 GGTTTAGTTGCGACTCCTTTCTTTACGCAGCCTTGTGCTGTTAACTATGTTTATTATCTT 484
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 394 GGTTTAGTTGCGACTCCTTTCTTTACGCAGCCTTGTGCTGTTAACTACGTTTATTATCTT 453
Query 485 TCTTACATAAACAATGGAAGCTTGCAA-CTTCCCATTGAGGAATTGCCTTTTCTTGAGCT 543
|| ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 454 TCCTACATAAACAATGGAAGCTTG-AAGCTTCCCATTGAGGACTTGCCTTTTCTTGAGCT 512
Query 544 CCAAGATTTGCCTTCTTTCTTCTCTGTTTCTGGCTCTTATCCTGCTTACTTTGAGATGGT 603
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 513 CCAAGATTTGCCTTCTTTCTTCTCTGTTTCTGGATCTTACCCTGCTTACTTTGAGATGGT 572
Query 604 GCTTCAACAGTTCATAAATTTCGAAAAAGCTGATTTCGTTCTCGTTAATAGCTTCCAAGA 663
||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 573 GCTTCAACAATTTATAAATTTCGAAAAAGCTGATTTCGTACTTGTTAATAGCTTCCAAGA 632
Query 664 GTTGGAACTGCATGAGAATGAATTGTGGTCGAAAGCTTGTCCTGTGTTGACAATTGGTCC 723
||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 633 GTTGGAACTTCATGAGAATGCATTGTGGTCGAAAGCTTGTCCTGTGTTGACCATTGGTCC 692
Query 724 AACTATTCCATCAATTTACTTAGACCAACGTATCAAATCAGACACCGGCTATGATCTTAA 783
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 693 GACTATTCCATCAATTTACTTAGACCAACGTATCAAATCAGACATTGACTATGATCTGAA 752
Query 784 TCTCTTTGAATCGAAAGATGATTCCTTCTGCATTAACTGGCTCGACACAAGGCCACAAGG 843
|||| | ||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 753 TCTCATAGAATCGAAAGATGATTCCTTCTGCACTAACTGGCTCGACACGAGGCCACAAGG 812
Query 844 GTCGGTGGTGTACGTAGCATTCGGAAGCATGGCTCAGCTGACTAATGTGCAGATGGAGGA 903
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 813 GTCGGTGGTGTACGTAGCATTCGGAAGCATGGCTCAGCTGACTAATGAGCAGATGGAGGA 872
Query 904 GCTTGCTTCAGCAGTAAGCAACTTCAGCTTCCTGTGGGTGGTCAGATCTTCAGAGGAGGA 963
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 873 GCTTGCTTCAGCAGTAAGCAACTTCAGCTTCCTCTGGGTGGTCAGATCTTCAGAGGAGGC 932
Query 964 AAAACTCCCATCAGGGTTTCTTGAGACAGTGAATAAAGAAAAGAGCTTGGTCTTGAAATG 1023
||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 933 AAAGCTCCCACCAGGGTTTCTTGAGACAGTGAATAAAGACAAGAGCTTGGTCTTGAAATG 992
Query 1024 GAGTCCTCAGCTTCAAGTTCTGTCAAACAAAGCCATCGGTTGTTTCTTGACTCACTGTGG 1083
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 993 GAGTCCTCAGCTTCAAGTTCTATCAAACAAAGCCATCGGTTGTTTCTTGACCCACTGTGG 1052
Query 1084 CTGGAACTCAACCATGGAGGCTTTGACCTTCGGGGTTCCCATGGTGGCAATGCCCCAATG 1143
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1053 CTGGAACTCCACAATGGAGGCTTTGACCTTTGGGGTTCCCATGGTGGCAATGCCCCAATG 1112
Query 1144 GACTGATCAACCGATGAACGCAAAGTACATACAAGATGTGTGGAAGGCTGGAGTTCGTGT 1203
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1113 GACTGATCAACCGATGAACGCAAAGTACATACAAGATGTGTGGAAAGCTGGAGTTCGTGT 1172
Query 1204 GAAGACAGAGAAGGAGAGTGGGATTGCCAAGAGAGAGGAGATTGAGTTTAGCATTaagga 1263
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 GAAGACAGAAAAGGAGAGTGGGATTGCCAAGAGAGAGGAGATTGAGTTTAGCATTAAGGA 1232
Query 1264 agtgatggaaggagagaggagcaaagagatgaagaagaacgtgaagaaatggagagaCTT 1323
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1233 AGTGATGGAAGGAGAGAGGAGCAACGAGATGAAGAAGAATGTGAAGAAATGGAGAGACTT 1292
Query 1324 GGCTGTCAAGTCACTCAATGAAGGAGGTTCTACGGATA-CTAACATTGATACATTTGTAT 1382
||||||||||||||||| ||||||||||||||| |||| | |||||||| ||||||||||
Sbjct 1293 GGCTGTCAAGTCACTCAGTGAAGGAGGTTCTACAGATATC-AACATTGACACATTTGTAT 1351
Query 1383 CAAGGGTTCAGAGCAAATAGGTAACTCACATACAGTAGCAAAGGTCCTTCTATAATA 1439
||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 1352 CAAGGGTTCAGAGCAAATAAGTTACTCACATAAAGTAGCAAAGGTCCTTCTATAATA 1408
> Ahg483500 jgi|Araly1|483500|fgenesh2_kg.4__2560__AT2G43840.1
Length=1427
Score = 1393 bits (754), Expect = 0.0
Identities = 1208/1424 (85%), Gaps = 44/1424 (3%)
Strand=Plus/Plus
Query 25 aagagagaaagggggaga-agtgagagagatggagcataagagagGACATGTATTAGCAG 83
|||||||| || |||| || | ||||||||||| | | ||||||||||||||||||||
Sbjct 23 AAGAGAGAGAGAAAGAGATAG-G-GAGAGATGGAGAAGATGAGAGGACATGTATTAGCAG 80
Query 84 TGCCGTACCCAACG-CAAGGACACATCACACC-ATTCCGCCAATTCTGCAAACGACTTCA 141
|||| | ||||| | |||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 81 TGCCATTCCCAA-GCCAAGGACACATCACTCCGATT-CGCCAATTCTGCAAACGACTTCA 138
Query 142 CTTCAAAGGTCTCAAAACCACTCTCGCTCTCACCACTTTCGTCTTCAACTCCATCAATCC 201
|| ||||||| ||||||| |||| | |||||||||||||| |||||||| ||||| | ||
Sbjct 139 CTCCAAAGGTTTCAAAACAACTCACACTCTCACCACTTTCATCTTCAACACCATCCA-CC 197
Query 202 T-GACCTATCCGGTCCAATCTCCATAGCCACCATCTCCGATGGCTATGACCATGGG-GG- 258
| |||| ||| |||| |||||||||||||| |||||||||||||| ||||| ||| ||
Sbjct 198 TCGACCCATCTAGTCCTATCTCCATAGCCACAATCTCCGATGGCTACGACCA-GGGAGGC 256
Query 259 TT-TCGAGACAGCTGACTCCATCGAC-GACTACCT-CAAAGACTTTAAAA-CTTCCGGCT 314
|| || | |||| | || || | || ||||| |||| |||| |||| ||| ||||
Sbjct 257 TTCTC-A-TCAGCCGGTTCTGTC-CCTGAGTACCTCCAAA-ACTTCAAAACCTT-TGGCT 311
Query 315 CGAAAACCATTGCAGACATCATCCAAAAACACCAGACTAGTGATAACCCCATCACTTGTA 374
| |||||| |||| || |||||| || ||||||| || |||||| |||||||||||||
Sbjct 312 CCAAAACCGTTGCTGATGTCATCCGCAAGCACCAGAGTACTGATAATCCCATCACTTGTA 371
Query 375 TCGTCTATGATGCTTTCCTGCCTTGGGCACTTGACGTTGCTAGAGAGTTTGGTTTAGTTG 434
||||||| ||| ||||| ||||||||||||||||| |||| || ||||||||||||| ||
Sbjct 372 TCGTCTACGATTCTTTCATGCCTTGGGCACTTGACCTTGCAAGGGAGTTTGGTTTAGCTG 431
Query 435 CGACTCCTTTCTTTACGCAGCCTTGTGCTGTTAACTATGTTTATTATCTTTCTTACATAA 494
|| |||||||||| |||||| |||| || ||||||||| | ||||||||||||||||||
Sbjct 432 CGGCTCCTTTCTTCACGCAGTCTTGCGCCGTTAACTATATCAATTATCTTTCTTACATAA 491
Query 495 ACAATGGAAGCTTGCA-ACTTCCCATTGAGGAATTGCCTTTTCTTGAGCTCCAAGATTTG 553
||||||| ||||| | ||||||||| ||| |||||| ||||||||||||||||||||
Sbjct 492 ACAATGGTCGCTTG-ACACTTCCCATCAAGGGTTTGCCTCTTCTTGAGCTCCAAGATTTG 550
Query 554 CCTTCTTTCTTCTCTGTTTCTGGCTCTTATCC-TGCTTACTTTGAGATGGTGCTTCAACA 612
||| ||||| || || | ||||||| | || |||||||||||||||||||||||||||
Sbjct 551 CCTACTTTCGTCACTCCTACTGGCTCCCA-CCTTGCTTACTTTGAGATGGTGCTTCAACA 609
Query 613 GTTCATAAATTTCGAAAAAGCTGATTTCGTTCTCGTTAATAGCTTCCAAGAGTTGGAACT 672
||||| ||| ||||| |||||||||||||| ||||||||| |||||| || | || ||
Sbjct 610 GTTCACAAACTTCGACAAAGCTGATTTCGTACTCGTTAATTCCTTCCATGACCTCGACCT 669
Query 673 GCATG-AGAATGAATTGTGGTCGAAAGCTTGTCCTGTGTTGACAATTGGTCCAACTATTC 731
|| | || | || |||| |||||| | |||||||||||||||||||||||||||| |||
Sbjct 670 TCAGGAAG-AGGAGTTGTTGTCGAAGGTTTGTCCTGTGTTGACAATTGGTCCAACTGTTC 728
Query 732 CATCAATTTACTTAGACCAAC-GTATCAAATCAGACACCGGCTATGATCTTAATCTCTTT 790
||||||| ||||||||||||| | ||||||| |||| || ||||||||| || |||||
Sbjct 729 CATCAATGTACTTAGACCAACAG-ATCAAATTTGACAACGACTATGATCTAAACCTCTTC 787
Query 791 GAATCGAAAGATGATTCCTTCTGCATTAACTGGCTCGACACA-AGGCCACAAGGGTCGGT 849
|| | |||||| | | |||| |||| | ||||||| |||| | |||||||||||||||||
Sbjct 788 GACTTGAAAGAAGCTGCCTTATGCACTGACTGGCTAGACA-AGAGGCCACAAGGGTCGGT 846
Query 850 GGTGTACGTAGCATTCGGAAGCATGGCTCAGCTGACTAATGTGCAGATGGAGGAGCTTGC 909
|||||| |||| || || ||||||||| | |||| || || ||||||||| ||| ||||
Sbjct 847 GGTGTATATAGCTTTTGGGAGCATGGCTAAACTGAGTAGTGAGCAGATGGAAGAGATTGC 906
Query 910 TTCAGCAG-TAAGCAACTTCAGCTTCCTGTGGGTGGTCAGATCTTCAGAGGAGGAAAAAC 968
||| || | ||||||||||||||| |||||||||||||||| ||||||||||| ||| |
Sbjct 907 TTCGGC-GATAAGCAACTTCAGCTACCTGTGGGTGGTCAGAGCTTCAGAGGAGTCAAAGC 965
Query 969 TCCCATCAGGGTTTCTTGAGACAGTGAATAAAGAAAAGAGCTTGGTCTTGAAATGGAGTC 1028
||||| |||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||
Sbjct 966 TCCCACCAGGGTTTCTTGAGACAGTGGATAAAGACAAGAGCTTGGTTTTGAAGTGGAGTC 1025
Query 1029 CTCAGCTTCAAGTTCTGTCAAACAAAGCCATCGGTTGTTTCTTGACTCACTGTGGCTGGA 1088
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1026 CTCAGCTTCAAGTTCTGTCAAACAAAGCCATCGGTTGTTTCCTGACTCACTGTGGCTGGA 1085
Query 1089 ACTCAACCATGGAGGCTTTGACCTTCGGGGTTCCCATGGTGGCAATGCCCCAATGGACTG 1148
|||| || ||||||| ||||| || ||||||||||||||||| ||||| ||||||||||
Sbjct 1086 ACTCCACAATGGAGGGTTTGAGTTTAGGGGTTCCCATGGTGGCTATGCCTCAATGGACTG 1145
Query 1149 ATCAACCGATGAACGCAAAGTACATACAAGATGTGTGGAAGGCTGGAGTTCGTGTGAAGA 1208
||||||| ||||| |||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct 1146 ATCAACCAATGAATGCAAAGTATATACAAGATGTGTGGAAGGTTGGGGTTCGTGTGAAGG 1205
Query 1209 CAGAGAAGGAGAGTGGGATTGCCAAGAGAGAGGAGATTGAGTTTAGCATTaaggaagtga 1268
||||||| || |||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1206 CAGAGAAAGAAAGTGGGATTGCCAAAAGAGAGGAGATTGAGTTGAGCATCAAGGAAGTGA 1265
Query 1269 tggaaggagagaggagcaaagagatgaagaagaa--cgtgaagaaatggagagaCTTGGC 1326
|||||||||||| |||||||||||||||| |||| || ||| || ||||||||||||||
Sbjct 1266 TGGAAGGAGAGAAGAGCAAAGAGATGAAGGAGAATGCGGGAA-AA-TGGAGAGACTTGGC 1323
Query 1327 TGTCAAGTCACTCAATGAAGGAGGTTCTACGGATA-CTAACATTGATACATTTGTATCAA 1385
||| |||||||||| ||||||||| ||||| |||| | |||||| | ||||||||||||
Sbjct 1324 TGTGAAGTCACTCAGTGAAGGAGGCTCTACAGATATC-AACATTAACGCATTTGTATCAA 1382
Query 1386 GGGTTCAGAGCAAATAGGTAACT-CACAT-ACA--GTAGCAAAG 1425
|||| | |||||| || | | ||||| | | |||||||||
Sbjct 1383 AAATTCAAATCAAATAAGTTA-TGCACATGATAATGTAGCAAAG 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59763594405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5