BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43840.2 Length=1402 Score E Sequences producing significant alignments: (Bits) Value Ahg483500 jgi|Araly1|483500|fgenesh2_kg.4__2560__AT2G43840.1 2218 0.0 Ahg483498 jgi|Araly1|483498|fgenesh2_kg.4__2558__AT2G43820.1 1382 0.0 > Ahg483500 jgi|Araly1|483500|fgenesh2_kg.4__2560__AT2G43840.1 Length=1427 Score = 2218 bits (1201), Expect = 0.0 Identities = 1343/1411 (95%), Gaps = 12/1411 (1%) Strand=Plus/Plus Query 1 AAAAGATTgagagcgac------agagagagataacgagagagagagagatggagaagat 54 ||||||||||||||||| ||||||||| || |||| || |||||||||||||||| Sbjct 1 AAAAGATTGAGAGCGACAAAGAAAGAGAGAGAGAAAGAGATAGGGAGAGATGGAGAAGAT 60 Query 55 gagagGACATGTATTAGCAGTGCCATTTCCAAGCCAAGGACACATCACCCCGATTCGCCA 114 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 61 GAGAGGACATGTATTAGCAGTGCCATTCCCAAGCCAAGGACACATCACTCCGATTCGCCA 120 Query 115 ATTCTGCAAACGACTTCACTCCAAAGGTTTCAAAACCACTCACACTCTCACCACTTTTAT 174 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 121 ATTCTGCAAACGACTTCACTCCAAAGGTTTCAAAACAACTCACACTCTCACCACTTTCAT 180 Query 175 CTTCAACACAATCCACCTCGACCCATCTAGTCCTATCTCCATAGCCACAATCTCCGATGG 234 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTTCAACACCATCCACCTCGACCCATCTAGTCCTATCTCCATAGCCACAATCTCCGATGG 240 Query 235 CTATGACCAGGGAGGGTTCTCATCAGCCGGTTCTGTCCCGGAGTACCTACAAAACTTCAA 294 ||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 241 CTACGACCAGGGAGGCTTCTCATCAGCCGGTTCTGTCCCTGAGTACCTCCAAAACTTCAA 300 Query 295 AACCTTCGGCTCCAAAACCGTCGCTGATATCATCCGCAAACACCAGAGTACTGATAA-CC 353 |||||| |||||||||||||| |||||| |||||||||| ||||||||||||||||| || Sbjct 301 AACCTTTGGCTCCAAAACCGTTGCTGATGTCATCCGCAAGCACCAGAGTACTGATAATCC 360 Query 354 CTATTACTTGTATCGTCTATGATTCTTTCATGCCTTGGGCGCTTGACCTTGCAATGGATT 413 | || |||||||||||||| |||||||||||||||||||| ||||||||||||| ||| | Sbjct 361 C-ATCACTTGTATCGTCTACGATTCTTTCATGCCTTGGGCACTTGACCTTGCAAGGGAGT 419 Query 414 TTGGTCTAGCTGCGGCTCCTTTCTTCACGCAGTCTTGCGCCGTTAACTATATCAATTATC 473 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TTGGTTTAGCTGCGGCTCCTTTCTTCACGCAGTCTTGCGCCGTTAACTATATCAATTATC 479 Query 474 TTTCTTACATAAACAATGGTAGCTTGACACTTCCCATCAAGGATTTGCCTCTTCTTGAGC 533 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 480 TTTCTTACATAAACAATGGTCGCTTGACACTTCCCATCAAGGGTTTGCCTCTTCTTGAGC 539 Query 534 TCCAAGATTTGCCTACTTTCGTCACTCCTACTGGTTCACACCTTGCTTACTTTGAGATGG 593 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 540 TCCAAGATTTGCCTACTTTCGTCACTCCTACTGGCTCCCACCTTGCTTACTTTGAGATGG 599 Query 594 TGCTTCAACAGTTCACCAACTTCGACAAAGCTGATTTCGTACTCGTTAATTCCTTCCATG 653 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TGCTTCAACAGTTCACAAACTTCGACAAAGCTGATTTCGTACTCGTTAATTCCTTCCATG 659 Query 654 ACCTCGACCTTCATGTTA-AGGAGTTGTTGTCGAAAGTATGTCCTGTGTTGACAATTGGT 712 ||||||||||||| | | |||||||||||||||| || ||||||||||||||||||||| Sbjct 660 ACCTCGACCTTCA-GGAAGAGGAGTTGTTGTCGAAGGTTTGTCCTGTGTTGACAATTGGT 718 Query 713 CCAACTGTTCCATCAATGTACTTAGACCAACAGATCAAATCAGACAACGACTATGATCTG 772 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 719 CCAACTGTTCCATCAATGTACTTAGACCAACAGATCAAATTTGACAACGACTATGATCTA 778 Query 773 AACCTCTTTGACTTAAAAGAAGCTGCCTTATGCACTGACTGGCTAGACAAGAGGCCAGAA 832 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 779 AACCTCTTCGACTTGAAAGAAGCTGCCTTATGCACTGACTGGCTAGACAAGAGGCCACAA 838 Query 833 GGATCGGTAGTATATATAGCTTTTGGGAGCATGGCTAAACTGAGTAGTGAGCAGATGGAA 892 || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 GGGTCGGTGGTGTATATAGCTTTTGGGAGCATGGCTAAACTGAGTAGTGAGCAGATGGAA 898 Query 893 GAGATTGCTTCGGCGATAAGCAACTTCAGCTACCTCTGGGTTGTCAGAGCTTCAGAGGAG 952 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 899 GAGATTGCTTCGGCGATAAGCAACTTCAGCTACCTGTGGGTGGTCAGAGCTTCAGAGGAG 958 Query 953 TCAAAGCTCCCACCAGGGTTTCTTGAAACAGTGGATAAAGACAAGAGCTTGGTCTTGAAG 1012 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 959 TCAAAGCTCCCACCAGGGTTTCTTGAGACAGTGGATAAAGACAAGAGCTTGGTTTTGAAG 1018 Query 1013 TGGAGTCCTCAGCTTCAAGTTCTGTCAAACAAAGCCATCGGTTGTTTCATGACTCACTGT 1072 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1019 TGGAGTCCTCAGCTTCAAGTTCTGTCAAACAAAGCCATCGGTTGTTTCCTGACTCACTGT 1078 Query 1073 GGCTGGAACTCAACCATGGAGGGTTTGAGTTTAGGGGTTCCCATGGTGGCTATGCCTCAA 1132 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 GGCTGGAACTCCACAATGGAGGGTTTGAGTTTAGGGGTTCCCATGGTGGCTATGCCTCAA 1138 Query 1133 TGGACTGATCAACCAATGAATGCAAAGTATATACAAGATGTATGGAAGGTTGGGGTTCGT 1192 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1139 TGGACTGATCAACCAATGAATGCAAAGTATATACAAGATGTGTGGAAGGTTGGGGTTCGT 1198 Query 1193 GTGAAAGCAGAGAAAGAAAGTGGCATTTGC-AAAAGAGAGGAGATTGAGTTTAGCATCAA 1251 ||||| ||||||||||||||||| ||| || |||||||||||||||||||| |||||||| Sbjct 1199 GTGAAGGCAGAGAAAGAAAGTGGGATT-GCCAAAAGAGAGGAGATTGAGTTGAGCATCAA 1257 Query 1252 GGAAGTGATGGAAGGAGAGAAGAGCAAAGAGATGAAAGAGAATGCGGGAAAATGGAGAGA 1311 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1258 GGAAGTGATGGAAGGAGAGAAGAGCAAAGAGATGAAGGAGAATGCGGGAAAATGGAGAGA 1317 Query 1312 CTTGGCTGTGAAGTCACTCAGTGAAGGAGGTTCTACAGATATCAACATTAACGAATTTGT 1371 |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 1318 CTTGGCTGTGAAGTCACTCAGTGAAGGAGGCTCTACAGATATCAACATTAACGCATTTGT 1377 Query 1372 ATCAAAAATTCAAATCAAATAAGTTAAGCAC 1402 |||||||||||||||||||||||||| |||| Sbjct 1378 ATCAAAAATTCAAATCAAATAAGTTATGCAC 1408 > Ahg483498 jgi|Araly1|483498|fgenesh2_kg.4__2558__AT2G43820.1 Length=1408 Score = 1382 bits (748), Expect = 0.0 Identities = 1171/1372 (85%), Gaps = 41/1372 (3%) Strand=Plus/Plus Query 47 gaga-agat-gagagGACATGTATTAGCAGTGCCATTTCCAAGC-CAAGGACACATCACC 103 |||| |||| || ||||||||||||||||||||||| ||||| | |||||||||||||| Sbjct 24 GAGAGAGATGGA-AGGACATGTATTAGCAGTGCCATATCCAA-CGCAAGGACACATCACA 81 Query 104 CCGATTCGCCAATTCTGCAAACGACTTCACTCCAAAGGTTTCAAAACCACTCACACTCTC 163 || || ||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct 82 CCAATCCGCCAATTCTGCAAACGACTTCACTCCAAAGGTCTCAAAACCACTCTCGCTCTC 141 Query 164 ACCACTTTTATCTTCAACACAATC-CACCTCGACCCATCTAGTCCTATCTCCATAGCCAC 222 |||||||| |||||||| | ||| |||| |||| |||| |||| |||||||||||||| Sbjct 142 ACCACTTTCGTCTTCAACTCCATCAAACCT-GACCTATCTGGTCCAATCTCCATAGCCAC 200 Query 223 AATCTCCGATGGCTATGACCA-GGGAGGGTTCTCATCAGCCGGTTCTGTC-CCGGAGTAC 280 |||||||| ||||||||||| ||| || ||| |||||| || || || || || ||| Sbjct 201 CATCTCCGACGGCTATGACCATGGG-GGTTTCGAATCAGCTGGCTCCATCGCC-GACTAC 258 Query 281 CTAC-AAAACTTCAAAACCTTC-GGCTCCAAAACCGTCGCTGATATCATCCGCAAACACC 338 || | ||||||| |||| |||| ||||| |||||| | || || |||||||||||||||| Sbjct 259 CT-CGAAAACTTTAAAA-CTTCGGGCTCGAAAACCATTGCAGACATCATCCGCAAACACC 316 Query 339 AGAGTACTGATAACCCTATTACTTGTATCGTCTATGATTCTTTCATGCCTTGGGCGCTTG 398 ||| || ||||| ||| || |||||||| ||||||||| |||||||||||||||| |||| Sbjct 317 AGACTAGTGATAGCCCCATCACTTGTATTGTCTATGATGCTTTCATGCCTTGGGCACTTG 376 Query 399 ACCTTGCAATG-GATTTTGGTCTAGCTGCGGCTCCTTTCTTCACGCAGTCTTGCGCCGTT 457 || |||| | | || |||||| ||| |||| |||||||||| |||||| |||| || ||| Sbjct 377 ACATTGCTA-GAGAGTTTGGTTTAGTTGCGACTCCTTTCTTTACGCAGCCTTGTGCTGTT 435 Query 458 AACTATATCAATTATCTTTCTTACATAAACAATGGTAGCTTGACA-CTTCCCATCAAGGA 516 ||||| | |||||||||| |||||||||||||| ||||||| | |||||||| |||| Sbjct 436 AACTACGTTTATTATCTTTCCTACATAAACAATGGAAGCTTGA-AGCTTCCCATTGAGGA 494 Query 517 TTTGCCTCTTCTTGAGCTCCAAGATTTGCCTACTTTCGTCACTCCTACTGGTTCACACCT 576 |||||| ||||||||||||||||||||||| ||||| || || | |||| || ||| Sbjct 495 CTTGCCTTTTCTTGAGCTCCAAGATTTGCCTTCTTTCTTCTCTGTTTCTGGATCTTACCC 554 Query 577 TGCTTACTTTGAGATGGTGCTTCAACAGTTCACCAACTTCGACAAAGCTGATTTCGTACT 636 ||||||||||||||||||||||||||| || | || ||||| ||||||||||||||||| Sbjct 555 TGCTTACTTTGAGATGGTGCTTCAACAATTTATAAATTTCGAAAAAGCTGATTTCGTACT 614 Query 637 CGTTAATTCCTTCCATGACCTCGACCTTCATGTTAA-GGAGTTGTTGTCGAAAG-TATGT 694 |||||| |||||| || | || ||||||| || | | |||| |||||||| | ||| Sbjct 615 TGTTAATAGCTTCCAAGAGTTGGAACTTCATGAGAATGCA-TTGTGGTCGAAAGCT-TGT 672 Query 695 CCTGTGTTGACAATTGGTCCAACTGTTCCATCAATGTACTTAGACCAACAG-ATCAAATC 753 ||||||||||| |||||||| ||| |||||||||| ||||||||||||| | |||||||| Sbjct 673 CCTGTGTTGACCATTGGTCCGACTATTCCATCAATTTACTTAGACCAAC-GTATCAAATC 731 Query 754 AGACAACGACTATGATCTGAACCTCTTTGACTTAAAAGAAGCTGCCTTATGCACTGACTG 813 ||||| |||||||||||||| ||| | || | ||||| | | |||| |||||| |||| Sbjct 732 AGACATTGACTATGATCTGAATCTCATAGAATCGAAAGATGATTCCTTCTGCACTAACTG 791 Query 814 GCTAGACAAGAGGCCAGAAGGATCGGTAGTATATATAGCTTTTGGGAGCATGGCTAAACT 873 ||| |||| ||||||| |||| ||||| || || |||| || || ||||||||| | || Sbjct 792 GCTCGACACGAGGCCACAAGGGTCGGTGGTGTACGTAGCATTCGGAAGCATGGCTCAGCT 851 Query 874 GAGTAGTGAGCAGATGGAAGAGATTGCTTCGGCGA-TAAGCAACTTCAGCTACCTCTGGG 932 || || |||||||||||| ||| ||||||| || | ||||||||||||||| |||||||| Sbjct 852 GACTAATGAGCAGATGGAGGAGCTTGCTTCAGC-AGTAAGCAACTTCAGCTTCCTCTGGG 910 Query 933 TTGTCAGAGCTTCAGAGGAGTCAAAGCTCCCACCAGGGTTTCTTGAAACAGTGGATAAAG 992 | |||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||| Sbjct 911 TGGTCAGATCTTCAGAGGAGGCAAAGCTCCCACCAGGGTTTCTTGAGACAGTGAATAAAG 970 Query 993 ACAAGAGCTTGGTCTTGAAGTGGAGTCCTCAGCTTCAAGTTCTGTCAAACAAAGCCATCG 1052 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 971 ACAAGAGCTTGGTCTTGAAATGGAGTCCTCAGCTTCAAGTTCTATCAAACAAAGCCATCG 1030 Query 1053 GTTGTTTCATGACTCACTGTGGCTGGAACTCAACCATGGAGGGTTTGA-GTTTAGGGGTT 1111 |||||||| |||| ||||||||||||||||| || ||||||| ||||| ||| |||||| Sbjct 1031 GTTGTTTCTTGACCCACTGTGGCTGGAACTCCACAATGGAGGCTTTGACCTTT-GGGGTT 1089 Query 1112 CCCATGGTGGCTATGCCTCAATGGACTGATCAACCAATGAATGCAAAGTATATACAAGAT 1171 ||||||||||| ||||| ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct 1090 CCCATGGTGGCAATGCCCCAATGGACTGATCAACCGATGAACGCAAAGTACATACAAGAT 1149 Query 1172 GTATGGAAGGTTGGGGTTCGTGTGAAAG-CAGAGAAA-GAAAGTGGCATTTG-CAAAAGA 1228 || ||||| | ||| ||||||||| ||| |||| ||| || ||||| | ||| ||| ||| Sbjct 1150 GTGTGGAAAGCTGGAGTTCGTGTG-AAGACAGA-AAAGGAGAGTGGGA-TTGCCAAGAGA 1206 Query 1229 GAGGAGATTGAGTTTAGCATCAAGGAAGTGATGGAAGGAGAGAAGAGCAAAGAGATGAAA 1288 |||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| || Sbjct 1207 GAGGAGATTGAGTTTAGCATTAAGGAAGTGATGGAAGGAGAGAGGAGCAACGAGATG-AA 1265 Query 1289 G-AGAATGCGGGA-AAATGGAGAGACTTGGCTGTGAAGTCACTCAGTGAAGGAGGTTCTA 1346 | |||||| | | |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1266 GAAGAATG-TGAAGAAATGGAGAGACTTGGCTGTCAAGTCACTCAGTGAAGGAGGTTCTA 1324 Query 1347 CAGATATCAACATTAACGA-ATTTGTATCAAAAATTCAAATCAAATAAGTTA 1397 |||||||||||||| || | ||||||||||| |||| | ||||||||||| Sbjct 1325 CAGATATCAACATTGAC-ACATTTGTATCAAGGGTTCAGAGCAAATAAGTTA 1375 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52412177120 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5