BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43840.2
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483500 jgi|Araly1|483500|fgenesh2_kg.4__2560__AT2G43840.1 2218 0.0
Ahg483498 jgi|Araly1|483498|fgenesh2_kg.4__2558__AT2G43820.1 1382 0.0
> Ahg483500 jgi|Araly1|483500|fgenesh2_kg.4__2560__AT2G43840.1
Length=1427
Score = 2218 bits (1201), Expect = 0.0
Identities = 1343/1411 (95%), Gaps = 12/1411 (1%)
Strand=Plus/Plus
Query 1 AAAAGATTgagagcgac------agagagagataacgagagagagagagatggagaagat 54
||||||||||||||||| ||||||||| || |||| || ||||||||||||||||
Sbjct 1 AAAAGATTGAGAGCGACAAAGAAAGAGAGAGAGAAAGAGATAGGGAGAGATGGAGAAGAT 60
Query 55 gagagGACATGTATTAGCAGTGCCATTTCCAAGCCAAGGACACATCACCCCGATTCGCCA 114
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 61 GAGAGGACATGTATTAGCAGTGCCATTCCCAAGCCAAGGACACATCACTCCGATTCGCCA 120
Query 115 ATTCTGCAAACGACTTCACTCCAAAGGTTTCAAAACCACTCACACTCTCACCACTTTTAT 174
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 121 ATTCTGCAAACGACTTCACTCCAAAGGTTTCAAAACAACTCACACTCTCACCACTTTCAT 180
Query 175 CTTCAACACAATCCACCTCGACCCATCTAGTCCTATCTCCATAGCCACAATCTCCGATGG 234
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCAACACCATCCACCTCGACCCATCTAGTCCTATCTCCATAGCCACAATCTCCGATGG 240
Query 235 CTATGACCAGGGAGGGTTCTCATCAGCCGGTTCTGTCCCGGAGTACCTACAAAACTTCAA 294
||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 241 CTACGACCAGGGAGGCTTCTCATCAGCCGGTTCTGTCCCTGAGTACCTCCAAAACTTCAA 300
Query 295 AACCTTCGGCTCCAAAACCGTCGCTGATATCATCCGCAAACACCAGAGTACTGATAA-CC 353
|||||| |||||||||||||| |||||| |||||||||| ||||||||||||||||| ||
Sbjct 301 AACCTTTGGCTCCAAAACCGTTGCTGATGTCATCCGCAAGCACCAGAGTACTGATAATCC 360
Query 354 CTATTACTTGTATCGTCTATGATTCTTTCATGCCTTGGGCGCTTGACCTTGCAATGGATT 413
| || |||||||||||||| |||||||||||||||||||| ||||||||||||| ||| |
Sbjct 361 C-ATCACTTGTATCGTCTACGATTCTTTCATGCCTTGGGCACTTGACCTTGCAAGGGAGT 419
Query 414 TTGGTCTAGCTGCGGCTCCTTTCTTCACGCAGTCTTGCGCCGTTAACTATATCAATTATC 473
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTGGTTTAGCTGCGGCTCCTTTCTTCACGCAGTCTTGCGCCGTTAACTATATCAATTATC 479
Query 474 TTTCTTACATAAACAATGGTAGCTTGACACTTCCCATCAAGGATTTGCCTCTTCTTGAGC 533
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 480 TTTCTTACATAAACAATGGTCGCTTGACACTTCCCATCAAGGGTTTGCCTCTTCTTGAGC 539
Query 534 TCCAAGATTTGCCTACTTTCGTCACTCCTACTGGTTCACACCTTGCTTACTTTGAGATGG 593
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 540 TCCAAGATTTGCCTACTTTCGTCACTCCTACTGGCTCCCACCTTGCTTACTTTGAGATGG 599
Query 594 TGCTTCAACAGTTCACCAACTTCGACAAAGCTGATTTCGTACTCGTTAATTCCTTCCATG 653
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGCTTCAACAGTTCACAAACTTCGACAAAGCTGATTTCGTACTCGTTAATTCCTTCCATG 659
Query 654 ACCTCGACCTTCATGTTA-AGGAGTTGTTGTCGAAAGTATGTCCTGTGTTGACAATTGGT 712
||||||||||||| | | |||||||||||||||| || |||||||||||||||||||||
Sbjct 660 ACCTCGACCTTCA-GGAAGAGGAGTTGTTGTCGAAGGTTTGTCCTGTGTTGACAATTGGT 718
Query 713 CCAACTGTTCCATCAATGTACTTAGACCAACAGATCAAATCAGACAACGACTATGATCTG 772
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 719 CCAACTGTTCCATCAATGTACTTAGACCAACAGATCAAATTTGACAACGACTATGATCTA 778
Query 773 AACCTCTTTGACTTAAAAGAAGCTGCCTTATGCACTGACTGGCTAGACAAGAGGCCAGAA 832
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 779 AACCTCTTCGACTTGAAAGAAGCTGCCTTATGCACTGACTGGCTAGACAAGAGGCCACAA 838
Query 833 GGATCGGTAGTATATATAGCTTTTGGGAGCATGGCTAAACTGAGTAGTGAGCAGATGGAA 892
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGGTCGGTGGTGTATATAGCTTTTGGGAGCATGGCTAAACTGAGTAGTGAGCAGATGGAA 898
Query 893 GAGATTGCTTCGGCGATAAGCAACTTCAGCTACCTCTGGGTTGTCAGAGCTTCAGAGGAG 952
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 899 GAGATTGCTTCGGCGATAAGCAACTTCAGCTACCTGTGGGTGGTCAGAGCTTCAGAGGAG 958
Query 953 TCAAAGCTCCCACCAGGGTTTCTTGAAACAGTGGATAAAGACAAGAGCTTGGTCTTGAAG 1012
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 959 TCAAAGCTCCCACCAGGGTTTCTTGAGACAGTGGATAAAGACAAGAGCTTGGTTTTGAAG 1018
Query 1013 TGGAGTCCTCAGCTTCAAGTTCTGTCAAACAAAGCCATCGGTTGTTTCATGACTCACTGT 1072
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1019 TGGAGTCCTCAGCTTCAAGTTCTGTCAAACAAAGCCATCGGTTGTTTCCTGACTCACTGT 1078
Query 1073 GGCTGGAACTCAACCATGGAGGGTTTGAGTTTAGGGGTTCCCATGGTGGCTATGCCTCAA 1132
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GGCTGGAACTCCACAATGGAGGGTTTGAGTTTAGGGGTTCCCATGGTGGCTATGCCTCAA 1138
Query 1133 TGGACTGATCAACCAATGAATGCAAAGTATATACAAGATGTATGGAAGGTTGGGGTTCGT 1192
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1139 TGGACTGATCAACCAATGAATGCAAAGTATATACAAGATGTGTGGAAGGTTGGGGTTCGT 1198
Query 1193 GTGAAAGCAGAGAAAGAAAGTGGCATTTGC-AAAAGAGAGGAGATTGAGTTTAGCATCAA 1251
||||| ||||||||||||||||| ||| || |||||||||||||||||||| ||||||||
Sbjct 1199 GTGAAGGCAGAGAAAGAAAGTGGGATT-GCCAAAAGAGAGGAGATTGAGTTGAGCATCAA 1257
Query 1252 GGAAGTGATGGAAGGAGAGAAGAGCAAAGAGATGAAAGAGAATGCGGGAAAATGGAGAGA 1311
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1258 GGAAGTGATGGAAGGAGAGAAGAGCAAAGAGATGAAGGAGAATGCGGGAAAATGGAGAGA 1317
Query 1312 CTTGGCTGTGAAGTCACTCAGTGAAGGAGGTTCTACAGATATCAACATTAACGAATTTGT 1371
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1318 CTTGGCTGTGAAGTCACTCAGTGAAGGAGGCTCTACAGATATCAACATTAACGCATTTGT 1377
Query 1372 ATCAAAAATTCAAATCAAATAAGTTAAGCAC 1402
|||||||||||||||||||||||||| ||||
Sbjct 1378 ATCAAAAATTCAAATCAAATAAGTTATGCAC 1408
> Ahg483498 jgi|Araly1|483498|fgenesh2_kg.4__2558__AT2G43820.1
Length=1408
Score = 1382 bits (748), Expect = 0.0
Identities = 1171/1372 (85%), Gaps = 41/1372 (3%)
Strand=Plus/Plus
Query 47 gaga-agat-gagagGACATGTATTAGCAGTGCCATTTCCAAGC-CAAGGACACATCACC 103
|||| |||| || ||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 24 GAGAGAGATGGA-AGGACATGTATTAGCAGTGCCATATCCAA-CGCAAGGACACATCACA 81
Query 104 CCGATTCGCCAATTCTGCAAACGACTTCACTCCAAAGGTTTCAAAACCACTCACACTCTC 163
|| || ||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 82 CCAATCCGCCAATTCTGCAAACGACTTCACTCCAAAGGTCTCAAAACCACTCTCGCTCTC 141
Query 164 ACCACTTTTATCTTCAACACAATC-CACCTCGACCCATCTAGTCCTATCTCCATAGCCAC 222
|||||||| |||||||| | ||| |||| |||| |||| |||| ||||||||||||||
Sbjct 142 ACCACTTTCGTCTTCAACTCCATCAAACCT-GACCTATCTGGTCCAATCTCCATAGCCAC 200
Query 223 AATCTCCGATGGCTATGACCA-GGGAGGGTTCTCATCAGCCGGTTCTGTC-CCGGAGTAC 280
|||||||| ||||||||||| ||| || ||| |||||| || || || || || |||
Sbjct 201 CATCTCCGACGGCTATGACCATGGG-GGTTTCGAATCAGCTGGCTCCATCGCC-GACTAC 258
Query 281 CTAC-AAAACTTCAAAACCTTC-GGCTCCAAAACCGTCGCTGATATCATCCGCAAACACC 338
|| | ||||||| |||| |||| ||||| |||||| | || || ||||||||||||||||
Sbjct 259 CT-CGAAAACTTTAAAA-CTTCGGGCTCGAAAACCATTGCAGACATCATCCGCAAACACC 316
Query 339 AGAGTACTGATAACCCTATTACTTGTATCGTCTATGATTCTTTCATGCCTTGGGCGCTTG 398
||| || ||||| ||| || |||||||| ||||||||| |||||||||||||||| ||||
Sbjct 317 AGACTAGTGATAGCCCCATCACTTGTATTGTCTATGATGCTTTCATGCCTTGGGCACTTG 376
Query 399 ACCTTGCAATG-GATTTTGGTCTAGCTGCGGCTCCTTTCTTCACGCAGTCTTGCGCCGTT 457
|| |||| | | || |||||| ||| |||| |||||||||| |||||| |||| || |||
Sbjct 377 ACATTGCTA-GAGAGTTTGGTTTAGTTGCGACTCCTTTCTTTACGCAGCCTTGTGCTGTT 435
Query 458 AACTATATCAATTATCTTTCTTACATAAACAATGGTAGCTTGACA-CTTCCCATCAAGGA 516
||||| | |||||||||| |||||||||||||| ||||||| | |||||||| ||||
Sbjct 436 AACTACGTTTATTATCTTTCCTACATAAACAATGGAAGCTTGA-AGCTTCCCATTGAGGA 494
Query 517 TTTGCCTCTTCTTGAGCTCCAAGATTTGCCTACTTTCGTCACTCCTACTGGTTCACACCT 576
|||||| ||||||||||||||||||||||| ||||| || || | |||| || |||
Sbjct 495 CTTGCCTTTTCTTGAGCTCCAAGATTTGCCTTCTTTCTTCTCTGTTTCTGGATCTTACCC 554
Query 577 TGCTTACTTTGAGATGGTGCTTCAACAGTTCACCAACTTCGACAAAGCTGATTTCGTACT 636
||||||||||||||||||||||||||| || | || ||||| |||||||||||||||||
Sbjct 555 TGCTTACTTTGAGATGGTGCTTCAACAATTTATAAATTTCGAAAAAGCTGATTTCGTACT 614
Query 637 CGTTAATTCCTTCCATGACCTCGACCTTCATGTTAA-GGAGTTGTTGTCGAAAG-TATGT 694
|||||| |||||| || | || ||||||| || | | |||| |||||||| | |||
Sbjct 615 TGTTAATAGCTTCCAAGAGTTGGAACTTCATGAGAATGCA-TTGTGGTCGAAAGCT-TGT 672
Query 695 CCTGTGTTGACAATTGGTCCAACTGTTCCATCAATGTACTTAGACCAACAG-ATCAAATC 753
||||||||||| |||||||| ||| |||||||||| ||||||||||||| | ||||||||
Sbjct 673 CCTGTGTTGACCATTGGTCCGACTATTCCATCAATTTACTTAGACCAAC-GTATCAAATC 731
Query 754 AGACAACGACTATGATCTGAACCTCTTTGACTTAAAAGAAGCTGCCTTATGCACTGACTG 813
||||| |||||||||||||| ||| | || | ||||| | | |||| |||||| ||||
Sbjct 732 AGACATTGACTATGATCTGAATCTCATAGAATCGAAAGATGATTCCTTCTGCACTAACTG 791
Query 814 GCTAGACAAGAGGCCAGAAGGATCGGTAGTATATATAGCTTTTGGGAGCATGGCTAAACT 873
||| |||| ||||||| |||| ||||| || || |||| || || ||||||||| | ||
Sbjct 792 GCTCGACACGAGGCCACAAGGGTCGGTGGTGTACGTAGCATTCGGAAGCATGGCTCAGCT 851
Query 874 GAGTAGTGAGCAGATGGAAGAGATTGCTTCGGCGA-TAAGCAACTTCAGCTACCTCTGGG 932
|| || |||||||||||| ||| ||||||| || | ||||||||||||||| ||||||||
Sbjct 852 GACTAATGAGCAGATGGAGGAGCTTGCTTCAGC-AGTAAGCAACTTCAGCTTCCTCTGGG 910
Query 933 TTGTCAGAGCTTCAGAGGAGTCAAAGCTCCCACCAGGGTTTCTTGAAACAGTGGATAAAG 992
| |||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||
Sbjct 911 TGGTCAGATCTTCAGAGGAGGCAAAGCTCCCACCAGGGTTTCTTGAGACAGTGAATAAAG 970
Query 993 ACAAGAGCTTGGTCTTGAAGTGGAGTCCTCAGCTTCAAGTTCTGTCAAACAAAGCCATCG 1052
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 971 ACAAGAGCTTGGTCTTGAAATGGAGTCCTCAGCTTCAAGTTCTATCAAACAAAGCCATCG 1030
Query 1053 GTTGTTTCATGACTCACTGTGGCTGGAACTCAACCATGGAGGGTTTGA-GTTTAGGGGTT 1111
|||||||| |||| ||||||||||||||||| || ||||||| ||||| ||| ||||||
Sbjct 1031 GTTGTTTCTTGACCCACTGTGGCTGGAACTCCACAATGGAGGCTTTGACCTTT-GGGGTT 1089
Query 1112 CCCATGGTGGCTATGCCTCAATGGACTGATCAACCAATGAATGCAAAGTATATACAAGAT 1171
||||||||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 1090 CCCATGGTGGCAATGCCCCAATGGACTGATCAACCGATGAACGCAAAGTACATACAAGAT 1149
Query 1172 GTATGGAAGGTTGGGGTTCGTGTGAAAG-CAGAGAAA-GAAAGTGGCATTTG-CAAAAGA 1228
|| ||||| | ||| ||||||||| ||| |||| ||| || ||||| | ||| ||| |||
Sbjct 1150 GTGTGGAAAGCTGGAGTTCGTGTG-AAGACAGA-AAAGGAGAGTGGGA-TTGCCAAGAGA 1206
Query 1229 GAGGAGATTGAGTTTAGCATCAAGGAAGTGATGGAAGGAGAGAAGAGCAAAGAGATGAAA 1288
|||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| ||
Sbjct 1207 GAGGAGATTGAGTTTAGCATTAAGGAAGTGATGGAAGGAGAGAGGAGCAACGAGATG-AA 1265
Query 1289 G-AGAATGCGGGA-AAATGGAGAGACTTGGCTGTGAAGTCACTCAGTGAAGGAGGTTCTA 1346
| |||||| | | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1266 GAAGAATG-TGAAGAAATGGAGAGACTTGGCTGTCAAGTCACTCAGTGAAGGAGGTTCTA 1324
Query 1347 CAGATATCAACATTAACGA-ATTTGTATCAAAAATTCAAATCAAATAAGTTA 1397
|||||||||||||| || | ||||||||||| |||| | |||||||||||
Sbjct 1325 CAGATATCAACATTGAC-ACATTTGTATCAAGGGTTCAGAGCAAATAAGTTA 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5