BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43850.1
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935301 jgi|Araly1|935301|scaffold_403289.1 2453 0.0
Ahg939013 jgi|Araly1|939013|scaffold_503204.1 1179 0.0
Ahg482101 jgi|Araly1|482101|fgenesh2_kg.4__1161__AT2G31800.1 538 5e-152
> Ahg935301 jgi|Araly1|935301|scaffold_403289.1
Length=1480
Score = 2453 bits (1328), Expect = 0.0
Identities = 1424/1471 (97%), Gaps = 3/1471 (0%)
Strand=Plus/Plus
Query 50 tttttGCATCAATGGAGAACATAACCGCGCAGCTCAAACGAGGTATCTCAAGACAATTCT 109
||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 11 TTTTT-CATCAATGGAGAACATAACCGCGCAGCTAAAACGAGGGATCTCAAGACAATTCT 69
Query 110 CAACTGGTTCGATTCGTCGAACATTGAGCCGACAGTTCACGCGTCAGTCATCTCTTGACC 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 CAACTGGTTCGATTCGTCGAACATTGAGCCGACAGTTCACGCGTCAGTCATCTCTTGACC 129
Query 170 CTCGTAGGACCAACATGAGGTTTAGTTTCGGTCGTCAGTCTTCTCTCGATCCGATCAGGA 229
||||| |||||||||||||||||||||| ||||||||||||||| | ||||||||| |||
Sbjct 130 CTCGTCGGACCAACATGAGGTTTAGTTTTGGTCGTCAGTCTTCTTTAGATCCGATCCGGA 189
Query 230 GGAGTCCTGATTCT-TCCAAGAGTGATGACGAGCCACATATGTCGGTACCGGAGAATCTC 288
|||||||||||||| | | ||| || |||||||||||||||||||| ||||||||||||
Sbjct 190 GGAGTCCTGATTCTGT-TAGGAGCGACGACGAGCCACATATGTCGGTGCCGGAGAATCTC 248
Query 289 GATTCGACGATGCAGCTTCTCTTTATGGCTAGCAAAGGTGATGTCAGAGGAATCGAGGAG 348
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 249 GATTCCACGATGCAGCTTCTCTTTATGGCTAGCAAAGGTGATGTCAGAGGAATCGAAGAG 308
Query 349 CTTCTTGACGAAGGAATTGATGTTAATAGCATCGATCTTGATGGCCGGACGGCGCTTCAC 408
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 309 CTTCTTGATGAAGGAATTGATGTTAATAGCATCGATCTTGATGGCCGTACGGCGCTTCAC 368
Query 409 ATCGCCGCTTGTGAGGGACATCTTGGTGTCGTTAAGGCTCTTCTTAGCCGGAGAGCTAAC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 ATCGCCGCTTGTGAGGGACATCTTGGTGTCGTTAAGGCTCTTCTTAGCCGGAGAGCTAAC 428
Query 469 ATTGATGCTCGTGATCGATGGGGAAGTACGGCGGCTGCTGATGCAAAGTACTATGGGAAT 528
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 429 ATTGATGCTCGTGATCGATGGGGAAGTACGGCGGCTGCTGATGCAAAGTATTATGGGAAT 488
Query 529 TTAGATGTTTACAATCTCTTGAAGGCTCGAGGAGCTAAAGTTCCGAAAACTAGGAAGACT 588
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 489 TTAGATATTTACAATCTCTTGAAGGCTCGAGGAGCTAAAGTTCCGAAAACCAGGAAGACT 548
Query 589 CCGATGACTGTGTCGAATCCACGAGAAGTTCCTGAGTATGAGCTTAATCCACTTGAGGTT 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 549 CCGATGACTGTGTCGAATCCACGAGAAGTTCCTGAGTATGAGCTTAATCCACTTGAGATT 608
Query 649 CAAGTCAGGAAATCTGATGGCATCTCAAAGGGAGCATATCAAGTAGCTAAATGGAATGGC 708
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CAAGTTAGGAAAGCTGATGGCATCTCAAAGGGAGCATATCAAGTAGCTAAATGGAATGGC 668
Query 709 ACGCGGGTTTCAGTCAAAATACTTGATAAAGATAGTTACTCAGACCCGGAACGCATAAAC 768
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 669 ACGCGTGTTTCGGTCAAAATACTTGATAAAGATAGCTACTCAGACCCGGAACGCATAAAC 728
Query 769 GCATTTAGACATGAATTGACGTTGCTAGAAAAAGTCCGGCATCCAAATGTTATCCAGTTT 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GCATTTAGACATGAATTGACGTTGCTAGAAAAAGTCCGGCATCCAAATGTTATCCAGTTT 788
Query 829 GTTGGAGCTGTCACTCAGAATATACCGATGATGATTGTAGTCGAGTATAATCCGAAAGGA 888
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 789 GTTGGAGCTGTCACTCAGAATATACCGATGATGATTGTAGTCGAGTACAATCCGAAAGGA 848
Query 889 GATTTAAGTGTATATCTCCAAAAGAAAGGACGTCTTTCTCCATCCAAGGCACTTAGATTT 948
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 849 GATTTAAGTGTATATCTCCAAAAGAAAGGACGTCTTTCTCCTTCCAAGGCACTTAGATTT 908
Query 949 GCTCTTGATATTGCCAGAGGCATGAACTACCTCCATGAATGTAAACCAGATCCAATCATT 1008
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GCTCTTGATATTGCCAGGGGCATGAACTACCTCCATGAATGTAAACCAGATCCAATCATT 968
Query 1009 CACTGTGATCTAAAGCCAAAAAATATTTTGCTGGATAGAGGAGGGCAATTAAAGATCTCA 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 CACTGTGATCTAAAGCCAAAAAATATTTTGCTGGATAGAGGAGGGCAATTAAAGATCTCG 1028
Query 1069 GGATTTGGTATGATAAGATTGTCGAAAATTTCACAAGACAAGGCGAAAGTAGCAAACCAC 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 GGATTTGGTATGATAAGATTGTCGAAAATTTCACAAGACAAGGCGAAAGTAGCAAACCAC 1088
Query 1129 AAAGCACATATAGATCTCTCTAATTACTACATTGCACCAGAGGTTTATAAAGACGAAATA 1188
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1089 AAAGCACATATAGATCTCTCAAATTACTACATTGCACCAGAGGTTTATAAAGACGAAATA 1148
Query 1189 TTCGACCTAAGGGTTGATGCACACTCCTTTGGTGTCATTTTATACGAGATAACAGAGGGA 1248
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 TTTGACCGAAGGGTCGATGCACACTCCTTTGGTGTCATTTTATACGAGATAACAGAGGGA 1208
Query 1249 GTACCAGTTTTCCATCCGAGACCTCCTGAAGAAGTTGCGAGAATGATGTGCTTAGAAGGA 1308
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1209 GTACCAGTTTTCCATCCGAGACCTCCTGAAGAAGTTGCGAAAATGATGTGCTTAGAAGGA 1268
Query 1309 AAGAGACCTGTATTCAAAACTAAGTCAAGAAGTTACCCTCCAGATATAAAAGAGTTGATC 1368
|||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1269 AAGAGACCAGTATTTAAAACTAAGTCAAGAAGTTACCCTCCAGATATAAGAGAGTTGATA 1328
Query 1369 GAGAAATGTTGGCATCCAGAAGCGGGTATTAGACCGACATTCTCTGAAATTATTATTCGA 1428
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1329 GAGAAATGTTGGCATCCAGAAGCCGCTATTAGACCGACATTCTCTGAAATTATTATTCGA 1388
Query 1429 CTTGACAAAATAGTAGCAAATTGCTCTAAACAAGGATGGTGGAAAGACACATTCAAGTTC 1488
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1389 CTTGACAAAATAGTAGCTAATTGCTCAAAACAAGGATGGTGGAAAGACACATTCAAGTTC 1448
Query 1489 CCTTGGAAATAAAAGGGGAAGAAGAAGGAGG 1519
|||||||||||||||| |||||||||| |||
Sbjct 1449 CCTTGGAAATAAAAGGAGAAGAAGAAGAAGG 1479
> Ahg939013 jgi|Araly1|939013|scaffold_503204.1
Length=1476
Score = 1179 bits (638), Expect = 0.0
Identities = 1202/1470 (82%), Gaps = 55/1470 (4%)
Strand=Plus/Plus
Query 57 ATCAATGGAGAACATAACCGCGCAGCTCAAACGAGGTATCTCAAGACAATTCTCAACTGG 116
||| ||||||||| | | |||||| | || || || || || ||||||||||| || ||
Sbjct 20 ATC-ATGGAGAACGTTGCTGCGCAGTTGAAGCGTGGGATATCGAGACAATTCTCGACAGG 78
Query 117 TTCGATTCGTCGAACATTGAGCCGACAGTTCACGCGTCAGTCA-TCTCTTGACCCTCGTA 175
||||| || |||||||| ||| |||| ||||| || || | |||||||| || ||
Sbjct 79 ATCGATGCGACGAACATTAAGCAGACAATTCACACGCCA-AAATTCTCTTGATCCACGGC 137
Query 176 GGACCAACATGAGGTTTAGTTTCGGTCGTCAGTCTTCTCTCGATCCGATCAGGAGGAGTC 235
| | ||||||||| || || ||||| ||||| ||||| || |||||||||||| | || |
Sbjct 138 GTAACAACATGAGATTCAGCTTCGGCCGTCAATCTTCGCTTGATCCGATCAGGCGTAGCC 197
Query 236 CTGATTCTTCCAAGAGTGATGACGAGCCACATATGTCGGTACCGGAGAATCTCGATTCGA 295
|||| || | | | | || |||||| |||||||| || || |||||||| |||||||
Sbjct 198 CTGAATC-T-C-TTA--GCTG-CGAGCCGCATATGTCTGTCCCCGAGAATCTTGATTCGA 251
Query 296 CGATGCAGCTTCTCTTTATGGCTAGCAAAGGTGATGTCAGA-GGAATCGAGGAGCTTCTT 354
| |||||||||||||||||||| || ||||| ||||| | | || | |||||||| ||
Sbjct 252 CAATGCAGCTTCTCTTTATGGCGAGTAAAGGCGATGTTA-ATGGCGTTGAGGAGCTGCTC 310
Query 355 GACGAAGGAATTGATGTTAATAGCATCGATCTTGATGGCCGGACGGCGCTTCACATCGCC 414
|||||||||| ||||| |||||||| ||||||||||| || || || |||||||| ||
Sbjct 311 AACGAAGGAATCGATGTGAATAGCATTGATCTTGATGGTCGAACTGCTCTTCACATTGCT 370
Query 415 GCTTGTGAGGGACATCT-TGGTGTCGTTAAGGCTCTTCTTAGCCGGAGAGCTAACATTGA 473
||||||| || ||| | | ||| ||||||| |||||||||||||||||||||||| ||
Sbjct 371 TCTTGTGAAGGTCAT-TACGATGTTGTTAAGGTTCTTCTTAGCCGGAGAGCTAACATCGA 429
Query 474 TGCTCGTGATCGATGGGGAAGTACGGCGGCTGCTGATGCAAAGTACTATGGGAAT-TTAG 532
||||||||| || ||||| ||||||||||||| |||||||||||| ||||||||| || |
Sbjct 430 TGCTCGTGACCGTTGGGGTAGTACGGCGGCTGTTGATGCAAAGTATTATGGGAATGTT-G 488
Query 533 ATGTTTACAATCTCTTGAAGGCTCGAGGAGCTAAAGTTCCGAAAACTAGGAAGACTCCGA 592
| || || | ||||||||| |||||||||||||||| |||||||||||| |||||||| |
Sbjct 489 AAGTGTATAGTCTCTTGAAAGCTCGAGGAGCTAAAGCTCCGAAAACTAGAAAGACTCCAA 548
Query 593 TGACTGT-GTCGAATCC-ACGAGAAGTTCCTGAGTATGAGCTTAATCCACTTGAGGTTCA 650
||| || | |||||| | |||||||||||||||||||||||||||||||||| | ||
Sbjct 549 TGAAGGTAG-GGAATCCGA-AAGAAGTTCCTGAGTATGAGCTTAATCCACTTGAGCTGCA 606
Query 651 AGTCAGGAAA-TCTGATGGCATCTCAAA-GGGAGCATATCAAGTAGCTAAATGGAATGGC 708
|||| | ||| | ||||||||| ||||| |||| | ||||||||||||||||||||||||
Sbjct 607 AGTCCGAAAAGT-TGATGGCATTTCAAAGGGGA-CTTATCAAGTAGCTAAATGGAATGGC 664
Query 709 ACGCGGGTTTCAGTCAAA-ATACTT-GATAAAGATAGTTACTCAGA-CCCGGAACGCA-T 764
||||| || ||||| ||| ||| || |||||||||||||| || || ||| ||||| | |
Sbjct 665 ACGCGAGTCTCAGT-AAAGATA-TTCGATAAAGATAGTTATTCCGATCCC-GAACG-AGT 720
Query 765 AAACGCATTT-AGACATGAATTGACGTTGCTAGAAAAAGTC-CGGCATCCAAATGTTATC 822
||| || ||| | | | |||||||| ||||||| ||||| | |||||||||||| || |
Sbjct 721 AAATGC-TTTCACAAACGAATTGACTTTGCTAGCAAAAG-CTCGGCATCCAAATATTGTT 778
Query 823 CAGTTTGTTGGAGCTGTCACTCAGAATATACCGATGATGATTGTAGTCGAGTATAATCCG 882
|| ||||||||||| |||||||| ||| ||||||||||||||||||| |||| ||||||
Sbjct 779 CAATTTGTTGGAGCCGTCACTCAAAATCTACCGATGATGATTGTAGTAGAGTGTAATCCT 838
Query 883 AAAGGAGATTTAAGTGTATATCTCCAAAAGAAAGGACGTCTTTCTCCATCCAAGGCACTT 942
||||| ||| ||||||| ||||| ||||||||||| || |||||||| || || || ||
Sbjct 839 AAAGGTGATCTAAGTGTCTATCTTCAAAAGAAAGGTCGCCTTTCTCCTTCAAAAGCTCTG 898
Query 943 AGATTTGCTCTTGATATTGCCAGAGGCATGAACTACCTCCATGAATGTAAACCAGATCCA 1002
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGATTTGCTCTTGATATTGCTAGAGGCATGAACTACCTCCATGAATGTAAACCAGATCCG 958
Query 1003 ATCATTCACTGTGA-TCTAAAGCCAAAAAATATTTTGCTGGATAGAGGAGGGCAATTAAA 1061
||||| ||||| || | |||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 959 ATCATCCACTGCGAGT-TAAAGCCAAAAAATATTTTGCTAGATAGAGGAGGACAATTGAA 1017
Query 1062 GATCTCAGGATTTGGTATGATAA-GATTGTCGAAA-ATTTCACAAGACAAGGCGAAAGTA 1119
|||||| ||||||||| |||||| | ||||| ||| ||| | ||||||| || ||| ||
Sbjct 1018 GATCTCTGGATTTGGTTTGATAAAG-TTGTC-AAAGATTGGAGAAGACAATGCAAAAATA 1075
Query 1120 GCAAACCACAAAGCACATATAGATCTCTCTAATTACTACATTGCACCAGAGGTTTATAAA 1179
| |||||| |||| || || ||| || |||||||| || ||||| || |||| |||
Sbjct 1076 GTGAACCACGAAGCTCAAATCGATAAGTCAAATTACTATATAGCACCCGAAATTTACAAA 1135
Query 1180 GACGAAATATTCGACCTAAGGGTTGATGCACACTCCTTTGGTGTCATTTTATACGAGATA 1239
|| ||| | ||||| ||||||||||| || || |||||||||||||| || ||| |
Sbjct 1136 GATGAAGTCTTCGATAAAAGGGTTGATGTGCATTCGTTTGGTGTCATTTTGTATGAGTTG 1195
Query 1240 ACAGAGGGAGTACCAGTT-TTCCATCCGAGACCTCCTGAAGAAGTTGCGAGAATG-ATGT 1297
|| ||||||||| | || |||||||| | ||| |||||||| ||||| ||||| ||||
Sbjct 1196 ACCGAGGGAGTATCT-TTATTCCATCCTAAACCACCTGAAGAGGTTGC-AGAATCTATGT 1253
Query 1298 GCT-TAGAAGG-AAAGAGACCTGTATTCAAAACTAAGTCAA-GAAGTTACCCTCCAGATA 1354
| | ||||||| ||| ||||| | ||| ||| || |||| || |||||||||| || |
Sbjct 1254 G-TATAGAAGGTAAA-AGACCAACAATCAGAACAAAATCAAAGA-GTTACCCTCCGGA-A 1309
Query 1355 TA-AAAGAGTTGATCGAGAAATGTTGGCATCCAGAAG-CGGGTATTAGACCGACATTCTC 1412
| ||||||||||| ||| ||||||||||||||||| | | ||| || || | ||||||
Sbjct 1310 TTGAAAGAGTTGATTGAGGAATGTTGGCATCCAGAAATCAG-TATGAGGCCAATATTCTC 1368
Query 1413 TGAAATTATTATTCGACTTGACAAAATAGTAGCAAATTGCTCTAAACAAGGATGGTGGAA 1472
||| ||||||||||| || ||||| ||||| ||||| || || || || || ||||||||
Sbjct 1369 TGAGATTATTATTCGGCTCGACAAGATAGTTGCAAACTGTTCCAAGCAGGGTTGGTGGAA 1428
Query 1473 AGACACATTCAAGTTCCCTTGGAAATAAAA 1502
||||||||| |||||||||||||||| |||
Sbjct 1429 AGACACATTTAAGTTCCCTTGGAAATGAAA 1458
> Ahg482101 jgi|Araly1|482101|fgenesh2_kg.4__1161__AT2G31800.1
Length=1795
Score = 538 bits (291), Expect = 5e-152
Identities = 705/900 (78%), Gaps = 47/900 (5%)
Strand=Plus/Plus
Query 85 AAACGAGGTATCTCAAGACAATTCTCAACTGGTTCGATTCGTCGAAC-ATTGAGCCGACA 143
|||||||| ||||| ||||||||||||||||| ||| ||||||| || || || || ||
Sbjct 65 AAACGAGGAATCTCGAGACAATTCTCAACTGGATCGCTTCGTCGTACGCTT-AGTCGTCA 123
Query 144 GTTCACGCGTC-AGTCATCTCTTGACCCTCGTAGGACCAACATGAGGTTTAGTTTCGGTC 202
|||||||||| || | || | || ||||| ||| ||| || |||| ||||||||||
Sbjct 124 ATTCACGCGTCAAG-CTTCACACGATCCTCGCCGGAACAATTTGCGGTTCAGTTTCGGTC 182
Query 203 GTCAGTCTTCTCTCGATCCGA-TCAGGAGGAGTCCTGATTCTTCCAAGAGTGATGACGAG 261
| || || ||||| ||||||| || | |||||||||| || | | | | | | |
Sbjct 183 GACAATCGTCTCTAGATCCGATTC-GCCGGAGTCCTGAAGGTT-CTA-ACCG-T--C-CG 235
Query 262 CCACATATGTCGGTACCGGAGAATCTCGATTCGACGATGCAGCTTCTCTTTATGGCTAGC 321
| || | || | |||||||| |||||||| | || ||||||||||| ||| ||||| |
Sbjct 236 CAAC-T-TG-CTGTACCGGATAATCTCGACGCTACTATGCAGCTTCTATTTGTGGCTTGT 292
Query 322 AAAGGTGATG-TCAGAGG-AATCGAGGAGCTTCTTGACGAAGGAATTGATGTTAATAGCA 379
| |||||||| | | ||| || |||| || ||||| ||||||||||||||||||||||
Sbjct 293 AGAGGTGATGTTGA-AGGTGTTC-AGGATCTGCTTGATGAAGGAATTGATGTTAATAGCA 350
Query 380 TCGATCTTGATGGCCGGACGGCGCTTCACATCGCCGCTTGTGAGGGACATCTTGGTGTCG 439
||||||||||||| || ||||| ||||| ||||| |||||||| || ||| ||| ||| |
Sbjct 351 TCGATCTTGATGGTCGTACGGCTCTTCATATCGCTGCTTGTGAAGGTCATGTTGATGTTG 410
Query 440 TTAAGGCT-CTTCTTAGCC-GGAGAG-CTAACATTGATGCTCGTGATCGATGGGGAAGTA 496
| ||| || ||||||| || ||| || |||| ||||||||||||||||| |||||||| |
Sbjct 411 TGAAG-CTTCTTCTTA-CCAGGA-AGGCTAATATTGATGCTCGTGATCGTTGGGGAAGCA 467
Query 497 CGGCGGCTGCTGATGCAAAGTACTATGGGAATTTAGATGTTTACAATC-TCTTGAAGGCT 555
|||| ||||||||||| ||||| ||||| || | ||||||| ||| | | ||||| ||
Sbjct 468 CGGCAGCTGCTGATGCTAAGTATTATGGTAACATGGATGTTTTCAA-CATTTTGAAAGCC 526
Query 556 CGAGGAGCTAAAGTTCCGAAAACTAGGAAG-ACTCCGATGACTGTGTCGAATCCACGAGA 614
|| |||||||||||||||||||| | ||| || |||||| |||| |||| || || ||
Sbjct 527 CGTGGAGCTAAAGTTCCGAAAACCAA-AAGGACACCGATGGTTGTGGCGAACCCTCGTGA 585
Query 615 AGTTCCTGAGTATGAGCTTAA-TCCACTTGAGGTTCAAGT-CAGGAAATCTGATGGCATC 672
|||||||||||| ||| |||| ||||| ||| ||||||| | ||||| ||||||| |||
Sbjct 586 AGTTCCTGAGTACGAG-TTAAATCCACAAGAGCTTCAAGTTC-GGAAAGCTGATGGTATC 643
Query 673 TCAAAGGGAGCATATCAAGTAGCTAAATGGAATGGCACGCGGGTTTCAGTCAAA-ATACT 731
||||||||| ||||||||| |||||||||||||| || ||| || || ||| |||||
Sbjct 644 TCAAAGGGAATATATCAAGTGGCTAAATGGAATGGGACTAAGGTATCGGT-AAAGATACT 702
Query 732 TGATAAAGATAGT-TACTCAG-ACCCGGAA-CGCATAAACGCATTTAGACATGAA-TTGA 787
|||||| ||| | ||| || | | ||| | |||||| || || | ||| ||| || |
Sbjct 703 TGATAAGGATC-TCTACA-AGGATCATGAAAC-CATAAATGCCTTCAAACACGAACTT-A 758
Query 788 CGTTGCTAGAAAAAGTCCGGCATCCAAATGTTATCCAGTTTGTTGGAGCTGTCACTCAGA 847
| || | || || || || ||||| |||||| | || |||||||||||||| ||||| |
Sbjct 759 CTTTATTCGAGAAGGTGCGTCATCCTAATGTTGTGCAATTTGTTGGAGCTGTTACTCAAA 818
Query 848 ATATACCGATGATGATTGTAGTC-GAGTATAATCCGAAAGGAGAT-TTAAGTGTATATCT 905
|| | || ||||||||||| ||| |||||| |||| ||||| || || | | |||||
Sbjct 819 ATGTCCCCATGATGATTGT-GTCCGAGTATCATCCTAAAGGTGACCTTGGGAGC-TATCT 876
Query 906 CCAAAAGAAAGGACGTCTTTCTCCATCCAAGGCACTTAGATTTGCTCTTGATATTGCCAG 965
||||||||||| |||||||||||| |||| | || |||||||| || ||||| |||||
Sbjct 877 TCAAAAGAAAGGTCGTCTTTCTCCAGCCAAAGTTCTAAGATTTGCCCTCGATATAGCCAG 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68905253205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5