BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43860.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902403 jgi|Araly1|902403|Al_scaffold_0004_3053 1967 0.0
> Ahg902403 jgi|Araly1|902403|Al_scaffold_0004_3053
Length=1218
Score = 1967 bits (1065), Expect = 0.0
Identities = 1168/1219 (96%), Gaps = 2/1219 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTATAACACTTCATGCCTTATTCTTCCTTTGGCTCTCATCATTCTTGATTTTACC 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 1 ATGGTTTATAACACTTCATGCCTTATTCTTCCTTTGGCTCTCATCTTTCTTGATTTCATC 60
Query 61 TTAATCTCATCATTAGCCCATCCGATTCCAAGCACACTCAACGTCTTATCCTACGGAGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TTAATCTCATCATTAGCCCATCCGATTCCAAGCACACTCAACGTCTTATCCTATGGAGCT 120
Query 121 AAACCAGACGGCTCAAAAGACTCAACCAAAGCCTTCTTAGCCGCATGGGACGTTGCTTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 AAACCAGACGGCTCAAAAGACTCAACCAAAGCCTTCTTAGCCGCATGGGACGTCGCTTGT 180
Query 181 GCATCCGCTAATCCTACAACT-ATAATCGTACCAAAAGGACGGTTCTTGGTCGGGAACCT 239
|| || ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCCTCGGCTAACCCTACAA-TGATAATCGTACCAAAAGGACGGTTCTTGGTCGGGAACCT 239
Query 240 TGTTTTTCATGGCAACGAGTGTAAGCAAGCGCCAATATCTATTCGTATAGCAGGCTCAAT 299
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTTTTCCAAGGCAACGAGTGTAAGCAAGCGCCAATATCTATTCGTATAGCAGGCTCAAT 299
Query 300 CGTTGCTCCGGAAGATTTTAGAATTATCGCAAGCTCAAAACATTGGATCTGGTTCGAGGA 359
|||||||||| ||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 300 TGTTGCTCCGGGAGATTTTAGAATTATCGCAGGCTCAGAACATTGGATCTCGTTCGAGGA 359
Query 360 TGTTACTGATGTTTCAATCTACGGTGGAATACTTGACGCTCAAGGCACTAGTTTGTGGAA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 TGTTACTGATGTTTCAATCTACGGTGGAATACTTGACGCTCAAGGCACTAGTTTATGGAA 419
Query 420 ATGCAAGAACAACGGTGGCCATAATTGTCCTACCGGTGCCAAGAGTTTGGTGTTTAGTGG 479
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 420 ATGCAAGAACAACGGTGGCCATAATTGTCCTACTGGTGCCAAGAGTTTGATGTTTAGTGG 479
Query 480 GTCAAATAACATCAAAATCAGTGGTTTAACGTCGATCAACAGCCAGAAATTCCATATAGT 539
|||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||
Sbjct 480 GTCAAATAACATCAAAATCAATGGTTTAACGTCGATAAACAGCCAGAGATTCCATATAGT 539
Query 540 CATCGATAATAGCAATAACGTGAACATTGACGGCGTTAAGGTTTCTGCTGATGAGAATAG 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 CATCGATAAAAGCAATAACGTGAACATTGACGGCGTTAAGGTTTCTGCTGATGCGAATAG 599
Query 600 CCCTAATACCGATGGGATTCACGTCGAATCATCTCACTCCGTCCATATCACTAACTCAAG 659
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 600 CCCTAACACCGATGGGATTCACGTCGAATCATCTCACTCCGTCCACATCACTAACTCTAG 659
Query 660 AATCGGAACCGGTGATGATTGCATCTCCATCGGTCCAGGATCCACTAATGTATTCATACA 719
|||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 660 AATCGGAACCGGTGATGATTGCATCTCCATCGGTCCAGGATCTACTGATGTTTTCATACA 719
Query 720 AACCATTCGATGCGGTCCAGGCCACGGCATCAGTATTGGAAGTCTTGGACGAGCAGAGGA 779
||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AACAATTCAATGTGGTCCAGGCCACGGCATCAGTATTGGAAGTCTTGGACGAGCAGAGGA 779
Query 780 AGAACAAGGAGTAGATAATGTGACCGTGAGTAACGTGGATTTCATGGGAACGAATAACGG 839
|||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 AGAACAAGGAGTGGATAACGTGACCGTGAGTAACGTGGATTTCATGGGAACGGATAACGG 839
Query 840 AGTTAGGATCAAAACATGGGGGAAAGATAGCAACAGTTTCGCTAGAAACATTGTTTTCCA 899
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 840 AGTTAGGATCAAAACATGGGGAAAAGATAGCAACAGTTTCGCTAGAAACATCGTTTTCCA 899
Query 900 ACATATTAACATGAAGATGGTCAAGAACCCAATCATTATAGACCAACACTACTGTCTTCA 959
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 900 ACATATTAATATGAAGATGGTCAAGAACCCGATCATTATAGACCAACACTACTGTCTTGA 959
Query 960 TAAACCTTGCCCTAAACAGGAATCAGGAGTTAAAGTATCAAATGTGAGATATGAAGATAT 1019
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 CAAACCTTGCCCTAAACAGGAATCTGGAGTTAAAGTATCAAATGTGAGATATGAAGATAT 1019
Query 1020 ACACGGGACTTCGAATACGGAAGTGGCGGTTTTGTTAGATTGTAGTAAGGAGAAACCATG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 ACACGGGACTTCGAATACGGAAGTGGCGGTTTTGTTAGATTGTAGTAAGGATAAACCATG 1079
Query 1080 TACCGGTATTGTAATGGACGATGTGAATCTTGTCTCTGTTCATCGACCGGCTCAGGCGTC 1139
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1080 TACCGGTATTGTAATGGACGATGTGAATCTTGTCTCTGTTAATCGACCGGCTCAGGCGTC 1139
Query 1140 TTGCGATAATGCAAATGGATCAGCGAACGACGTTGTCCCATTCACTCCTTGTCTAAAGAG 1199
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1140 TTGCGATAATGCAAATGGATTAGCGAACGACGTCGTCCCATTCACTCCTTGTCTAAAGAG 1199
Query 1200 GGAGATCATTATAACTTAA 1218
||||| ||||| ||||||
Sbjct 1200 CGAGATAATTATGACTTAA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5