BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43880.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935305 jgi|Araly1|935305|scaffold_403293.1 1892 0.0
> Ahg935305 jgi|Araly1|935305|scaffold_403293.1
Length=1222
Score = 1892 bits (1024), Expect = 0.0
Identities = 1127/1177 (96%), Gaps = 5/1177 (0%)
Strand=Plus/Plus
Query 10 AACATCTCCTTTCCTTGCGCCATCATATTTTTCTCTATCAATATTTTCTTCTTAATCAAG 69
||||||||||||||||| |||||||||||||||| | | ||| |||||||||| |||||
Sbjct 30 AACATCTCCTTTCCTTGTGCCATCATATTTTTCT-T-T-AATGTTTTCTTCTTTATCAAC 86
Query 70 TCATCACACGCAATGCCATCGTTTAACGTCCAAAGGTACGGAGCTAGAGGTGATGGGAGA 129
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 87 TCATCACACGCAATGCCATCGTTTAACGTACAAAGATACGGAGCTAGAGGTGACGGAAGA 146
Query 130 GCAGATGCGACCAAGTCCTTTTTGACAGCTTGGTCATTAGCCTGCGGCTCACGGGCTCGA 189
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 147 ACAGATGCGACCAAGTCCTTTTTGACAGCTTGGTCTTTAGCCTGCGGCTCACGGGCTCGA 206
Query 190 GCCATGGTCTACGTTCCCCGTGGAACATATTTGGTCAAAAACCTAGTCTTTTGGGGTCCT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 GCCATGGTCTACGTTCCCCGTGGAACATATTTGGTCAAAAACCTAGTCTTTTGGGGTCCT 266
Query 250 TGCAAGAACATTATAACTTTCAAAAACGATGGAACACTCGTGGCTCCAGCGAACTACTGG 309
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 267 TGCAAGAACATTATTACTTTCAAAAACGATGGAACACTCGTGGCTCCTGCGAACTACTGG 326
Query 310 GATATAGGTAATTCCGGTTATTGGATTCTTTTCGCTAAAGTAAACCGGATCTCGGTTTAC 369
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GATATAGGTAATTCTGGTTATTGGATTCTTTTCGCTAAAGTAAACCGGATCTCGGTTTAC 386
Query 370 GGTGGCACCATTGATGCTAGAGGAGCTGGTTATTGGTCTTGTAGAAAGAAAGGTAGTCAT 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 387 GGTGGCACCATTGATGCTAGAGGAGCTGGTTATTGGTCTTGTAGAAAGAAAGGTAGCCAT 446
Query 430 TGTCCTCAAGGTGCAAGGTCTATATCGTTCAGCTGGTGCAATAACGT-TCTACTAAGTGG 488
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 447 TGTCCTCAAGGTGCAAGGTCTATATCGTTCAGCTGGTGCAATAATGTGT-TACTAAGTGG 505
Query 489 TCTATCGTCGTTTAATAGCCAGAATATGCACGTCACGGTTCATCATTCTTCTAATGTTCG 548
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 506 TCTAACGTCGTTTAATAGCCAGAATATGCACGTCACGGTTCATCATTCCTCTAATGTTCG 565
Query 549 GATTGAAAACGTAAGAATTAGGGCTCCAAGTGGAAGCCCTAACACCGATGGTATCCACGT 608
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 566 GATTCAAAACATAAGAATTAGGGCTCCAAGTGGAAGCCCTAACACCGATGGTATCCACAT 625
Query 609 ACAGTCTTCTTCTGGAGTCACCATTAGTGGCGGAACCATTGCGACCGGTGATGACTGCAT 668
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 626 ACAGTCTTCTTCCGGAGTCACCATTAGTGGTGGAACCATTGCGACCGGTGATGACTGCAT 685
Query 669 TGCACTTAGTCAAGGATCTAGGAACATTTGGATCGAACGTGTCAATTGTGGACCGGGACA 728
||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 686 TGCTCTTAGTCAAGGATCTAGGAACGTTTGGATCGAACGTGTGAATTGTGGACCGGGACA 745
Query 729 TGGAATCAGCATTGGGAGTCTTGGGGATTACGCTAATGAGGAAGGTGTGCAAAATGTAAC 788
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 746 TGGAATCAGCATTGGGAGTCTTGGGGATTACGCTAATGAGGAGGGTGTGCAGAATGTAAC 805
Query 789 CGTTACGAGCTCTGTTTTCACCAAGACGCAGAACGGAGTAAGAATAAAGACATGGGCTAG 848
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 806 CGTTACGAGCTCTGTTTTCACCAAGACGCAGAACGGAGTAAGAATAAAAACTTGGGCTAG 865
Query 849 GCCTAGCAGAGGGTTTGTGAATAATGTGGTATTTCGAAATTTGATAATGAATAATGTTGA 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 866 GCCTAGCAGAGGGTTTGTGAATAATGTGGTATTTCGAAATTTGATAATGAATAATGTCGG 925
Query 909 AAATCCGGTGATAATCGATCAAAACTATTGTCCTAATGGAAAAGGTTGTCCTCGCCAGAG 968
|||||||||||||||||||||||||| |||||||||||||| || |||||||| |||||
Sbjct 926 TAATCCGGTGATAATCGATCAAAACTACTGTCCTAATGGAAATGGCTGTCCTCGTCAGAG 985
Query 969 CTCTGGAGTGAAGATAAGTGGAGTGACTTTTGCAAACATAAAGGGGACATCAACAACACC 1028
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 986 CTCTGGCGTGAAGATAAGTGGAGTGACTTTTGCAAACATAAAGGGAACATCAACAACACC 1045
Query 1029 AATAGCAATGAAGTTGGATTGTAGTGGAAGCAATCATTGCACAGGGCTTAGGTTACAAGA 1088
|||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1046 AATAGCTATGAAATTGGATTGTAGTGGAAGCAGTCATTGCACAGGGCTTAGGTTACAAGA 1105
Query 1089 CATTAAGCTTACTTACATGAGAAGATCATCAGCTTCTTATTGTAGGAACGCCCATGGACG 1148
||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1106 CATTAAGCTCACATACATGAGAAGATCATCAGCTTCTTACTGTAGGAACGCCCATGGAAG 1165
Query 1149 AGCCTCTGGAGTTATGGTTCCAAGGAATTGTATGTGA 1185
|||||||||||||||||||||||||||||||||||||
Sbjct 1166 AGCCTCTGGAGTTATGGTTCCAAGGAATTGTATGTGA 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5