BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43880.1 Length=1185 Score E Sequences producing significant alignments: (Bits) Value Ahg935305 jgi|Araly1|935305|scaffold_403293.1 1892 0.0 > Ahg935305 jgi|Araly1|935305|scaffold_403293.1 Length=1222 Score = 1892 bits (1024), Expect = 0.0 Identities = 1127/1177 (96%), Gaps = 5/1177 (0%) Strand=Plus/Plus Query 10 AACATCTCCTTTCCTTGCGCCATCATATTTTTCTCTATCAATATTTTCTTCTTAATCAAG 69 ||||||||||||||||| |||||||||||||||| | | ||| |||||||||| ||||| Sbjct 30 AACATCTCCTTTCCTTGTGCCATCATATTTTTCT-T-T-AATGTTTTCTTCTTTATCAAC 86 Query 70 TCATCACACGCAATGCCATCGTTTAACGTCCAAAGGTACGGAGCTAGAGGTGATGGGAGA 129 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||| Sbjct 87 TCATCACACGCAATGCCATCGTTTAACGTACAAAGATACGGAGCTAGAGGTGACGGAAGA 146 Query 130 GCAGATGCGACCAAGTCCTTTTTGACAGCTTGGTCATTAGCCTGCGGCTCACGGGCTCGA 189 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 147 ACAGATGCGACCAAGTCCTTTTTGACAGCTTGGTCTTTAGCCTGCGGCTCACGGGCTCGA 206 Query 190 GCCATGGTCTACGTTCCCCGTGGAACATATTTGGTCAAAAACCTAGTCTTTTGGGGTCCT 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 207 GCCATGGTCTACGTTCCCCGTGGAACATATTTGGTCAAAAACCTAGTCTTTTGGGGTCCT 266 Query 250 TGCAAGAACATTATAACTTTCAAAAACGATGGAACACTCGTGGCTCCAGCGAACTACTGG 309 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 267 TGCAAGAACATTATTACTTTCAAAAACGATGGAACACTCGTGGCTCCTGCGAACTACTGG 326 Query 310 GATATAGGTAATTCCGGTTATTGGATTCTTTTCGCTAAAGTAAACCGGATCTCGGTTTAC 369 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 327 GATATAGGTAATTCTGGTTATTGGATTCTTTTCGCTAAAGTAAACCGGATCTCGGTTTAC 386 Query 370 GGTGGCACCATTGATGCTAGAGGAGCTGGTTATTGGTCTTGTAGAAAGAAAGGTAGTCAT 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 387 GGTGGCACCATTGATGCTAGAGGAGCTGGTTATTGGTCTTGTAGAAAGAAAGGTAGCCAT 446 Query 430 TGTCCTCAAGGTGCAAGGTCTATATCGTTCAGCTGGTGCAATAACGT-TCTACTAAGTGG 488 |||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| Sbjct 447 TGTCCTCAAGGTGCAAGGTCTATATCGTTCAGCTGGTGCAATAATGTGT-TACTAAGTGG 505 Query 489 TCTATCGTCGTTTAATAGCCAGAATATGCACGTCACGGTTCATCATTCTTCTAATGTTCG 548 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 506 TCTAACGTCGTTTAATAGCCAGAATATGCACGTCACGGTTCATCATTCCTCTAATGTTCG 565 Query 549 GATTGAAAACGTAAGAATTAGGGCTCCAAGTGGAAGCCCTAACACCGATGGTATCCACGT 608 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 566 GATTCAAAACATAAGAATTAGGGCTCCAAGTGGAAGCCCTAACACCGATGGTATCCACAT 625 Query 609 ACAGTCTTCTTCTGGAGTCACCATTAGTGGCGGAACCATTGCGACCGGTGATGACTGCAT 668 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 626 ACAGTCTTCTTCCGGAGTCACCATTAGTGGTGGAACCATTGCGACCGGTGATGACTGCAT 685 Query 669 TGCACTTAGTCAAGGATCTAGGAACATTTGGATCGAACGTGTCAATTGTGGACCGGGACA 728 ||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 686 TGCTCTTAGTCAAGGATCTAGGAACGTTTGGATCGAACGTGTGAATTGTGGACCGGGACA 745 Query 729 TGGAATCAGCATTGGGAGTCTTGGGGATTACGCTAATGAGGAAGGTGTGCAAAATGTAAC 788 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 746 TGGAATCAGCATTGGGAGTCTTGGGGATTACGCTAATGAGGAGGGTGTGCAGAATGTAAC 805 Query 789 CGTTACGAGCTCTGTTTTCACCAAGACGCAGAACGGAGTAAGAATAAAGACATGGGCTAG 848 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 806 CGTTACGAGCTCTGTTTTCACCAAGACGCAGAACGGAGTAAGAATAAAAACTTGGGCTAG 865 Query 849 GCCTAGCAGAGGGTTTGTGAATAATGTGGTATTTCGAAATTTGATAATGAATAATGTTGA 908 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 866 GCCTAGCAGAGGGTTTGTGAATAATGTGGTATTTCGAAATTTGATAATGAATAATGTCGG 925 Query 909 AAATCCGGTGATAATCGATCAAAACTATTGTCCTAATGGAAAAGGTTGTCCTCGCCAGAG 968 |||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||| Sbjct 926 TAATCCGGTGATAATCGATCAAAACTACTGTCCTAATGGAAATGGCTGTCCTCGTCAGAG 985 Query 969 CTCTGGAGTGAAGATAAGTGGAGTGACTTTTGCAAACATAAAGGGGACATCAACAACACC 1028 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 986 CTCTGGCGTGAAGATAAGTGGAGTGACTTTTGCAAACATAAAGGGAACATCAACAACACC 1045 Query 1029 AATAGCAATGAAGTTGGATTGTAGTGGAAGCAATCATTGCACAGGGCTTAGGTTACAAGA 1088 |||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1046 AATAGCTATGAAATTGGATTGTAGTGGAAGCAGTCATTGCACAGGGCTTAGGTTACAAGA 1105 Query 1089 CATTAAGCTTACTTACATGAGAAGATCATCAGCTTCTTATTGTAGGAACGCCCATGGACG 1148 ||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 1106 CATTAAGCTCACATACATGAGAAGATCATCAGCTTCTTACTGTAGGAACGCCCATGGAAG 1165 Query 1149 AGCCTCTGGAGTTATGGTTCCAAGGAATTGTATGTGA 1185 ||||||||||||||||||||||||||||||||||||| Sbjct 1166 AGCCTCTGGAGTTATGGTTCCAAGGAATTGTATGTGA 1202 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44222583720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5