BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43890.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935306 jgi|Araly1|935306|scaffold_403294.1 1772 0.0
> Ahg935306 jgi|Araly1|935306|scaffold_403294.1
Length=1209
Score = 1772 bits (959), Expect = 0.0
Identities = 1076/1133 (95%), Gaps = 6/1133 (1%)
Strand=Plus/Plus
Query 50 TCTTGCTGATGAAATCATCAACGGCTGCTTCCAACTACAATGTTGTCAGCTTCGGTGCTA 109
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 56 TCTTGCTGATGAAATCATCAACGGCTGCGAACAACTACAATGTCGTCAGCTTCGGTGCTA 115
Query 110 AACCGGACGGTCGAACCGACTCCACTA-AAGCCTTCCTTGGCGCGTGGCAAGCAGCTTGC 168
|||||||||| ||||||||||||| | |||| ||||| || ||||||||||||||||||
Sbjct 116 AACCGGACGGAAGAACCGACTCCAC-AGAAGCTTTCCTGGGAGCGTGGCAAGCAGCTTGC 174
Query 169 CGTTCAGCTGCAGCGGTTACTGTAACGGTCCCGAGAGGAAGCTTCTTGCTCAAACCGGTG 228
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 175 CGTTCAGCTGCAGCAGTCACTGTAACGGTCCCGAGAGGAAGCTTCTTGCTAAAACCGGTG 234
Query 229 GAGTTTCGAGGTCCATGCCGCAGTAGAATAACGTTTCAGATCTATGGAACGATTGTAGCT 288
|||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 235 GAGTTTCGTGGTCCATGTCGCAGTAGAATCACGTTTCAGATCTATGGAACGATTGTTGCT 294
Query 289 CCTTCGGATTACCGCGGTTTGGGAAATTCCGGTTATTGGATCTTGTTCGTGAAAGTTAAC 348
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 295 CCTTCGGATTACCGTGGTTTGGGGAATTCCGGTTATTGGATCTTGTTCGTGAAAGTTAAC 354
Query 349 CGGATCTCAATCATTGGAGGAACTTTAGATGCTAGAGGTGCTTCTTTTTGGGCTTGTCGA 408
||||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 355 CGGATCTCAATCAATGGAGGAACGTTAGATGCTAGAGGCGCTTCTTTTTGGGCGTGTCGA 414
Query 409 AAATCCGGAAAGAGTTGCCCTGTTGGCGCCAGATCAATGACGTTTAACTGGGCAAACGAC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AAATCCGGAAAGAGTTGCCCTGTTGGCGCCAGATCAATGACGTTTAACTGGGCAAACGAC 474
Query 469 GTCGTAGTTAGTGGCTTAACGTCTATAAACAGTCAAACAACACATTTAGTGATAAACAGC 528
|| ||||| | ||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 475 GTAGTAGTGACCGGCTTAACGTCAATAAACAGTCAAGCAACACATTTAGTGATAAATAGC 534
Query 529 TGCAACAATGTAATTGTCCGGAAAGTAAAGCTAGTGGCTCCAGACCAAAGTCCGAACACA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 535 TGCAACAATGTAATTGTCCGGAAAGTAAAGCTAGTGGCTCCAGACCAAAGTCCCAACACA 594
Query 589 GATGGCCTCCACGTCCAAGGTTCTGCTGGTGTTACCGTAACCGATGGCACTTTTCATACC 648
|||||||| |||||||||||||||||||||||||||||||||||| |||| || || |||
Sbjct 595 GATGGCCTTCACGTCCAAGGTTCTGCTGGTGTTACCGTAACCGATAGCACATTCCAAACC 654
Query 649 GGAGATGATTGTATCTCTATTGGTCCAGGAACTCGTAACCTCTACATGTCTAAACTCAAT 708
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 655 GGAGATGATTGTATCTCAATCGGTCCTGGAACTCGTAACCTCTACATGTCTAAACTCAAT 714
Query 709 TGCGGTCCAGGCCATGGAATCAGTATTGGGAGTTTAGGGA-GAGATGCAAATGAAGCTGG 767
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 715 TGCGGTCCAGGCCATGGAATCAGTATTGGGAGTTT-GGGAAGAGATGCAAATGAAGCTGG 773
Query 768 AGTAGAGAACATAACGTTGATAAACTCTGTTTTTTCGGGCTCGGATAATGGTGTTCGGAT 827
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 774 AGTAGAGAACATAACGTTGATAAACTCTGTTTTTTCAGGTTCCGATAATGGTGTTCGGAT 833
Query 828 CAAGACATGGGCTAGACAAAGTACAGGTTTTGTAAGAAACGTTTTGTTCCAGAATCTGAT 887
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 834 CAAGACATGGGCTAGACAAAGTACAGGTTTTGTAAGAAACGTTTTGTTTCAGAATCTGAT 893
Query 888 CATGAAAAATGTTCAGAATCCGATCATTGTCGATCAAAATTACTGCCCTAG-TAATCAAG 946
|||||||||||||||||||||||||||||||||||| |||||||| || | ||||||||
Sbjct 894 CATGAAAAATGTTCAGAATCCGATCATTGTCGATCAGAATTACTGTCCG-GCTAATCAAG 952
Query 947 GTTGTCCTAAACAGGGTTCTGGAGTGAAGATTAGTCAGGTTGTGTATAGAAACATTCAAG 1006
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 953 GTTGTCCCAAACAGGGTTCTGGAGTGAAGATTAGTCAAGTTGTGTATAGAAACATTCAAG 1012
Query 1007 GGACGTCGCGGACGCAACAGGCTTTAACGTTTGATTGCAGTCGCAGTAATCCGTGCCAAG 1066
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GGACGTCGCGGAGGCAACAGGCTTTAACGTTTGATTGCAGTCGCAGTAATCCGTGCCAAG 1072
Query 1067 CGATTAGATTGCATGATATTAAGCTAACGTTTAACGGTCGGTCCGCTACTTCGACTTGTA 1126
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1073 CGATTAGATTACATGATATTAAGCTAACGTTTAACGGTCGGTCCGCTACTGCGACATGTA 1132
Query 1127 AGAATATTAAAGGAGTTAAGGCTGGTGTAGTGATGCCTCAAGGTTGTCTTTGA 1179
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 AGAATATTAAAGGAGTTAAGGCTGGTGTAGTGATGCCTCAAGGTTGTCTTTGA 1185
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1 ATGGATAATAATAAGCTTGTAGCTGTTTTG 30
||||||||||||||||||||||||||||||
Sbjct 22 ATGGATAATAATAAGCTTGTAGCTGTTTTG 51
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5