BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43910.2
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483509 jgi|Araly1|483509|fgenesh2_kg.4__2569__AT2G43910.1 1192 0.0
Ahg902409 jgi|Araly1|902409|Al_scaffold_0004_3059 472 3e-132
> Ahg483509 jgi|Araly1|483509|fgenesh2_kg.4__2569__AT2G43910.1
Length=871
Score = 1192 bits (645), Expect = 0.0
Identities = 771/828 (93%), Gaps = 24/828 (3%)
Strand=Plus/Plus
Query 78 ATGGCTGAAGAACAACAAAACTCAGATCAGAGCAATGGTGGAAACGTTATTCCAACTCCT 137
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 49 ATGGCTGAAGAACAAGAAAACTCAGGTCAGAGCAATGGTGGAAACGTTATTCCAACTCCT 108
Query 138 GAAGAAGTTGCTACGTTCCTGCACAAAACTGTTGAAGAAGGTGGATGGGAAAAATGTTGG 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 GAAGAAGTTGCTACGTTCCTGCACAAAACTGTTGAAGAAGGTGGATGGGAAAAATGTTGG 168
Query 198 GAAGAAGAGATAACACCATGGGACCAAGGGAGAGCCACACCTCTCATTGTTCATCTTGTC 257
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 169 GAAGAAGAGATAACACCATGGGACCAAGGAAGAGCCACACCTCTCATTGTTCATCTTGTC 228
Query 258 GACACTTCCTCACTCCCACTTGGCCGTGCTCTGGTCCCCGGCTGTGGTGGAGGACACGAC 317
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 229 GACACTTCCTCACTCCCACTTGGCCGTGCTCTTGTCCCCGGCTGTGGTGGAGGACACGAC 288
Query 318 GTCGTTGCGATGGCAAGTCCTGAACGCTTCGTTGTTGGATTGGATATTTCCGAAAGCGCA 377
||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 289 GTCGTTGCGATGGCAAGCCCCGAACGTTTCGTTGTTGGATTGGATATTTCCGAAAGCGCC 348
Query 378 CTCGCGAAAGCTAATGAGACTTACGGCTCCTCACCAAAGGCAGAGTACTTTTCGTTCGTG 437
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 349 CTCACGAAAGCTAATGAGACTTACGGCTCCTCACCAAAGGCAAAGTACTTTTCGTTCGTG 408
Query 438 AAGGAAGATGTTTTCACGTGGCGTCCTA-CTGAATTATTCGACCTCATCTTCGATTATGT 496
||||||||||||||||| |||||||||| | |||||||||||| | ||||||||||||||
Sbjct 409 AAGGAAGATGTTTTCACTTGGCGTCCTAAC-GAATTATTCGACTTTATCTTCGATTATGT 467
Query 497 GTTCTTCTGTGCCATTGAACCGGAGATGAGACCTGCATGGGCTAAATCTATGTATGAACT 556
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 468 GTTCTTCTGTGCTATTGAACCGGAGATGAGACCTGCATGGGCTAAATCCATGTATGAACT 527
Query 557 CTTAAAACCTGACGGCGAACTCATAACTCTCATGTATCCGATTACCGACCACGTTGGTGG 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CTTAAAACCTGACGGCGAACTCATAACTCTCATGTATCCGATTACCGACCACGTTGGTGG 587
Query 617 ACCTCCCTACAAAGTAGATGTCTCTACCTTCGAAGAGGTGTTGGTGCCTATAGGATTTAA 676
||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||
Sbjct 588 ACCTCCCTACAAAGTAGATGTCTCTACCTACGAAGATGTGTTGGTTCCCGCAGGATTTAA 647
Query 677 GGCAGTGTCTGTCGAGGAGAATCCTCACGCCATTCCAACTCG---GC--AAAGAGAAGCT 731
|||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||
Sbjct 648 GGCAGTGTCTGTCGAGGAGAATCCACACGCCATTCCTACTCGTAAGGGGAAAGAGAAGCT 707
Query 732 GGGAAGGTGGAAGAAGATCAATTGATCCCTAAGAAAGAGATCTTACTGTTTGGTAAGAGT 791
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 708 TGGAAGGTGGAAGAAGATCAATTGATCCCTAAGAAAGAGATCTTACTGTTTAGTAAGAGT 767
Query 792 --G-TTATATGTGTGATCTAC-AA---A-GA-G--TAAAATGATTATCT-T-CCTTTATT 838
| ||| |||||| |||||| || | || | |||||||||||||| | ||||||||
Sbjct 768 ATGATTACATGTGTAATCTACCAATCTATGAAGAGTAAAATGATTATCTCTTCCTTTATT 827
Query 839 TGCTCTATGTATGTTTCAATGTTGATGATTATTATGAGTAACAATAAT 886
| |||||| ||| || |||||||||||||||| |||||||||||
Sbjct 828 TACTCTATCCATG---CA-TGTTGATGATTATTATCTGTAACAATAAT 871
> Ahg902409 jgi|Araly1|902409|Al_scaffold_0004_3059
Length=522
Score = 472 bits (255), Expect = 3e-132
Identities = 442/530 (83%), Gaps = 21/530 (4%)
Strand=Plus/Plus
Query 240 CTCATTGTTCATCTTGTCGACACTTCCTCACTCCCACTTGGCCGTGCTCTGGTCCCCGGC 299
|||||| | | |||| ||||| |||| | ||||| ||||||||| |||| |||||||||
Sbjct 1 CTCATTCTGCGTCTTCTCGACTCTTCAGCTCTCCCTCTTGGCCGTACTCTTGTCCCCGGC 60
Query 300 TGTGGTGGAGGACACGACGTCG-TTG--CGA-TGGCAAGTCCTGAACGCTTCGTTGTTGG 355
||||| ||| ||| | | | ||| | | | || | || || ||||| |||||
Sbjct 61 TGTGGCGGAAGAC-TTAAAT-GCTTGTAC-ATTAACATTTTATG-TCGTTTCGTAGTTGG 116
Query 356 ATTGGATATTTCCGA-AAGCGCACTCGCGAAAGCTAATGAGACTTACGGCTCCTCACCAA 414
|||||||||||| || ||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 117 ATTGGATATTTCTGATAAG-GCTCTCACGAAAGCTAATGAGACTTACGGCTCCTCACCAA 175
Query 415 AGGCAGAGTACTTTTCGTTCGTGAAGGAAGATGTTTTCACGTGGCGTCCTA-CTGAATTA 473
||||| |||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 176 AGGCAAAGTACTTTTCGTTCGTGAAGGAAGATGTTTTCACTTGGCGTCCTAAC-GAATTA 234
Query 474 TTCGACCTCATCTTCGATTATGTGTTCTTCTGTGCCATTGAACCGGAGATGAGACCTGCA 533
|||||| | ||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 235 TTCGACTTTATCTTCGATTATGTGTTTTTCTGCGCAATTGAACCGGAGATGAGACCTGCA 294
Query 534 TGGGCTAAATCTATGTATGAACTCTTAAAACCTGACGGCGAACTCATAACTCTCATGTAT 593
|||| | |||| ||| |||||||| | ||||||||||| |||||||||||||| ||||||
Sbjct 295 TGGGGTGAATCCATGCATGAACTCCTGAAACCTGACGGAGAACTCATAACTCTGATGTAT 354
Query 594 CCGATTACCGACCACGTTGGTGGACCTCCCTACAAAGTAGATGTCTCTACCTTCGAAGAG 653
||||| |||||||||| |||||| ||||||||||||||| | | ||| ||| ||||||
Sbjct 355 CCGATGACCGACCACGAGGGTGGAGCTCCCTACAAAGTAGCTTTGTCTTCCTACGAAGAT 414
Query 654 GTGTTGGTGCC-TATAGGATTTAAGGCAGTGTCTGTCGAGGAGAATCCTCACGCCATTCC 712
|||||||| || | |||||||||| |||||||| | |||||||| || || |||||||
Sbjct 415 GTGTTGGTTCCGT-TAGGATTTAAAGCAGTGTCCATTGAGGAGAACCCAGACTCCATTCC 473
Query 713 AACTC-GGC----AAAGAGAAGCTGG-GAAGGTGGAAGAAGATCAATTGA 756
|||| ||| ||||||||||| | || ||||||||||||| || |||
Sbjct 474 CACTCAGGCCGGCAAAGAGAAGCTTGCGA-GGTGGAAGAAGATTAACTGA 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34234379466
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5