BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43920.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483509 jgi|Araly1|483509|fgenesh2_kg.4__2569__AT2G43910.1 830 0.0
Ahg902409 jgi|Araly1|902409|Al_scaffold_0004_3059 721 0.0
> Ahg483509 jgi|Araly1|483509|fgenesh2_kg.4__2569__AT2G43910.1
Length=871
Score = 830 bits (449), Expect = 0.0
Identities = 611/690 (89%), Gaps = 8/690 (1%)
Strand=Plus/Plus
Query 100 AATGGCTGAAGAACAACAAAATTCGA-GTTATAGCATTGGTGGAAACATTCTTCCTACTC 158
|||||||||||||||| |||| || | || | |||| |||||||||| || |||| ||||
Sbjct 48 AATGGCTGAAGAACAAGAAAACTC-AGGTCAGAGCAATGGTGGAAACGTTATTCCAACTC 106
Query 159 CTGAAGAAGCTGCTACATTCCAGCCCCAAGTTGTTGCAGAAGGCGGATGGGACAAATGTT 218
||||||||| |||||| |||| || | || ||||| |||||| |||||||| |||||||
Sbjct 107 CTGAAGAAGTTGCTACGTTCCTGCACAAAACTGTTGAAGAAGGTGGATGGGAAAAATGTT 166
Query 219 GGGAAGACGGGGTAACACCATGGGACCAAGGAAGAGCCACACCTCTCATTCTTCATCTTC 278
||||||| | | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 167 GGGAAGAAGAGATAACACCATGGGACCAAGGAAGAGCCACACCTCTCATTGTTCATCTTG 226
Query 279 TCGACTCTTCAGCTCTCCCTCTTGGCCGTACCCTTGTCCCCGGCTGTGGCGGAGGACACG 338
||||| |||| | ||||| ||||||||| | ||||||||||||||||| ||||||||||
Sbjct 227 TCGACACTTCCTCACTCCCACTTGGCCGTGCTCTTGTCCCCGGCTGTGGTGGAGGACACG 286
Query 339 ACGTCGTTGCGATGGCAAGCCCTGAACGTTTCGTAGTTGGATTGGATATTTCTGACAAG- 397
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct 287 ACGTCGTTGCGATGGCAAGCCCCGAACGTTTCGTTGTTGGATTGGATATTTCCGA-AAGC 345
Query 398 GCTCTCAAC-AAAGCTAATGAGACTTACGGCTCCTCACCGAAGGCAGAGTACTTTTCGTT 456
|| ||| || ||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 346 GCCCTC-ACGAAAGCTAATGAGACTTACGGCTCCTCACCAAAGGCAAAGTACTTTTCGTT 404
Query 457 CGTGAAGGAAGATGTTTTCACTTGGCGTCCTAACGAATTATTTGACCTCATCTTCGATTA 516
|||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 405 CGTGAAGGAAGATGTTTTCACTTGGCGTCCTAACGAATTATTCGACTTTATCTTCGATTA 464
Query 517 TGTGTTTTTCTGCGCAATTGAACCGGAGATGAGACCTGCATGGGGTAAATCCATGCATGA 576
|||||| ||||| || |||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 465 TGTGTTCTTCTGTGCTATTGAACCGGAGATGAGACCTGCATGGGCTAAATCCATGTATGA 524
Query 577 ACTCCTCAAACCTGACGGAGAACTTATAACTCTTATGTATCCGATGACCGACCACGAGGG 636
|||| | ||||||||||| ||||| |||||||| ||||||||||| |||||||||| ||
Sbjct 525 ACTCTTAAAACCTGACGGCGAACTCATAACTCTCATGTATCCGATTACCGACCACGTTGG 584
Query 637 TGGAGCTCCCTACAAAGTAGCTTTGTCTTCCTACGAAGATGTGTTGGTTCCGGTAGGATT 696
|||| ||||||||||||||| | | ||| |||||||||||||||||||||| | ||||||
Sbjct 585 TGGACCTCCCTACAAAGTAGATGTCTCTACCTACGAAGATGTGTTGGTTCCCGCAGGATT 644
Query 697 TAAAGCGGTGTCCGTTGAGGAGAACCCAGACTCCATTCCCACTCGTAAGGGCAAAGAGAA 756
||| || ||||| || |||||||| ||| || ||||||| ||||||||||| ||||||||
Sbjct 645 TAAGGCAGTGTCTGTCGAGGAGAATCCACACGCCATTCCTACTCGTAAGGGGAAAGAGAA 704
Query 757 GCTTGCGA-GGTGGAAGAAGATTAACTGAT 785
||||| || ||||||||||||| || ||||
Sbjct 705 GCTTG-GAAGGTGGAAGAAGATCAATTGAT 733
> Ahg902409 jgi|Araly1|902409|Al_scaffold_0004_3059
Length=522
Score = 721 bits (390), Expect = 0.0
Identities = 484/528 (92%), Gaps = 12/528 (2%)
Strand=Plus/Plus
Query 263 CTCATTCTTCATCTTCTCGACTCTTCAGCTCTCCCTCTTGGCCGTACCCTTGTCCCCGGC 322
|||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 CTCATTCTGCGTCTTCTCGACTCTTCAGCTCTCCCTCTTGGCCGTACTCTTGTCCCCGGC 60
Query 323 TGTGGCGGAGGACACGACGTCG-TTG--CGA-TGGCAAGCCCTGAACGTTTCGTAGTTGG 378
||||||||| ||| | | | ||| | | | || || ||||||||||||||
Sbjct 61 TGTGGCGGAAGAC-TTAAAT-GCTTGTAC-ATTAACATTTTATG-TCGTTTCGTAGTTGG 116
Query 379 ATTGGATATTTCTGACAAGGCTCTCAAC-AAAGCTAATGAGACTTACGGCTCCTCACCGA 437
||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 117 ATTGGATATTTCTGATAAGGCTCTC-ACGAAAGCTAATGAGACTTACGGCTCCTCACCAA 175
Query 438 AGGCAGAGTACTTTTCGTTCGTGAAGGAAGATGTTTTCACTTGGCGTCCTAACGAATTAT 497
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 AGGCAAAGTACTTTTCGTTCGTGAAGGAAGATGTTTTCACTTGGCGTCCTAACGAATTAT 235
Query 498 TTGACCTCATCTTCGATTATGTGTTTTTCTGCGCAATTGAACCGGAGATGAGACCTGCAT 557
| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCGACTTTATCTTCGATTATGTGTTTTTCTGCGCAATTGAACCGGAGATGAGACCTGCAT 295
Query 558 GGGGTAAATCCATGCATGAACTCCTCAAACCTGACGGAGAACTTATAACTCTTATGTATC 617
||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 296 GGGGTGAATCCATGCATGAACTCCTGAAACCTGACGGAGAACTCATAACTCTGATGTATC 355
Query 618 CGATGACCGACCACGAGGGTGGAGCTCCCTACAAAGTAGCTTTGTCTTCCTACGAAGATG 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CGATGACCGACCACGAGGGTGGAGCTCCCTACAAAGTAGCTTTGTCTTCCTACGAAGATG 415
Query 678 TGTTGGTTCCGGTAGGATTTAAAGCGGTGTCCGTTGAGGAGAACCCAGACTCCATTCCCA 737
||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 416 TGTTGGTTCCGTTAGGATTTAAAGCAGTGTCCATTGAGGAGAACCCAGACTCCATTCCCA 475
Query 738 CTC-GTAAGGGCAAAGAGAAGCTTGCGAGGTGGAAGAAGATTAACTGA 784
||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 476 CTCAGGCCGG-CAAAGAGAAGCTTGCGAGGTGGAAGAAGATTAACTGA 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5