BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43940.1
Length=842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483510 jgi|Araly1|483510|fgenesh2_kg.4__2570__AT2G43940.1 1291 0.0
> Ahg483510 jgi|Araly1|483510|fgenesh2_kg.4__2570__AT2G43940.1
Length=827
Score = 1291 bits (699), Expect = 0.0
Identities = 788/830 (95%), Gaps = 9/830 (1%)
Strand=Plus/Plus
Query 1 ATTTGTTTGCGTTGGTTGATCCGATGGAAAACGCCGGTAAAGCTACGTCACTCCAATCGT 60
||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATTGGTTTGCGTTCGTTGCTCCGATGGAAAACGCCGGTAAAGCTACGTCACTCCAATCTT 60
Query 61 CCCGTGATTTATTCCACCGGTTGATGAGCGAGAATTCTTC---TGGTGGTTGGGAGAAGA 117
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 61 CCCGTGATTTATTCCACCGGCTGATGAGCGAGAATTCTTCTGGTGGTGGTTGGGAGAAGA 120
Query 118 GTTGGGAAGCAGGAGCAACTCCATGGGACTTAGGAAAACCAACTCCGGTTATTGCGCATC 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 GTTGGGAAGCAGGAGCAACTCCATGGGACTTAGGAAAACCAACTCCGGTTATTGTGCATC 180
Query 178 TCGTCGAGACTGGTTCTTTGCCTAATGGCAGAGCTCTAGTTCCTGGTTGTGGAACTGGTT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCGTCGAGACTGGTTCTTTGCCTAATGGCAGAGCTCTAGTTCCTGGTTGTGGAACTGGTT 240
Query 238 ATGATGTGGTGGCAATGGCCTCCCCTGATCGTCATGTTGTTGGATTGGATATATCTAAAA 297
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 241 ATGATGTGGTGGCAATGGCCTCCCCTGATCGTCATGTCGTTGGACTGGATATATCTAAAA 300
Query 298 CTGCGGTTGAGCGATCAACAAAGAAGTTTTCTACATTGCCAAATGCAAAATACTTCTCCT 357
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 301 CTGCGGTTGAGCGATCAACAAAGAAGTTTTCTTCATTGCCCAATGCAAAATACTTCTCCT 360
Query 358 TCTTGAGTGAAGACTTTTTCACTTGGGAGCCAGCTGAAAAATTCGATCTCATTTTCGATT 417
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 TCTTGAGTGAAGACTTTTTCACTTGGGAGCCAGCTGAAAAATTTGATCTCATTTTCGATT 420
Query 418 ATACCTTCTTCTGTGCCTTTGAACCGGGCGTGAGACCTCTATGGGCACAACGAATGGAAA 477
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 421 ATACCTTCTTCTGTGCCTTTGAACCTGGCGTGAGACCTCTATGGGCACAACAAATGGAGA 480
Query 478 AACTTCTGAAACCTGGTGGAGAGCTTATAACATTGATGTTTCCTATTGATGAACGTTCTG 537
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AACTTCTGAAACCCGGTGGAGAGCTTATAACATTGATGTTTCCTATTGATGAACGTTCTG 540
Query 538 GAGGTCCTCCTTATGAAGTATCTGTGTCTGAATACGAGAAGGTTCTGATTCCACTGGGGT 597
||||||||||||| |||||||||||||||| || || || ||||||||||||||||| |
Sbjct 541 GAGGTCCTCCTTACAAAGTATCTGTGTCTGAGTATGAAAAAGTTCTGATTCCACTGGGTT 600
Query 598 TTGAGGCAATCTCCATTGTTGATAACGAACTTGCTGTAGGACCACGCAAGGGAATGGAGA 657
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 601 TTGAGGCAATCTCCATTGTGGATAACGAACTTGCTGTAGGACCACGCAAGGGTATGGAGA 660
Query 658 AGCTTGGAAGATGGAAGAAATCTTCCACATTTCACTCCACCTTGTGATTTGTGATAGA-T 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 661 AGCTTGGAAGATGGAAGAAATCTTCCACATTTCACTCCACCTTGTGATTTGTGAT-GAAT 719
Query 717 ACTCATATGCTT-ATATCTGGATGTTTTGTGAATTTGTCACTGAGAAATTAAACTTGTAG 775
||||||||||| | || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 720 GCTCATATGCTTCA-ATGTGGATGTTTTGTGAATTTGTCACTGATAAATTAAACTTGTAG 778
Query 776 GGCATATTGAAAGAGATG-GGAATCTGAAAAAGTATTTGTAAACACATGT 824
||| |||||| | || | |||| ||||| ||||||||||||||||||||
Sbjct 779 GGCC-ATTGAATGGGAAGAGGAACCTGAATAAGTATTTGTAAACACATGT 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31146423189
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5