BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43945.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483511 jgi|Araly1|483511|fgenesh2_kg.4__2571__AT2G43945.1 1568 0.0
Ahg939018 jgi|Araly1|939018|scaffold_503209.1 680 0.0
> Ahg483511 jgi|Araly1|483511|fgenesh2_kg.4__2571__AT2G43945.1
Length=1217
Score = 1568 bits (849), Expect = 0.0
Identities = 1136/1260 (90%), Gaps = 77/1260 (6%)
Strand=Plus/Plus
Query 2 TTGTTTTTGTATGCATTTGGTCTGTGTGTTGTGTTGTTTATCTTCTTCTTCTTCAACCCG 61
||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1 TTGTTTTTGTATGCATTTGGTCTGTGTGTTGTGTTGTGT-T-TTCTTCTTCTT------- 51
Query 62 ACCAAATACACATCCGACGGGGAAAAAGAGTTCCGACAAGAATCGAGAACTGAAAGATTT 121
| | || ||||||| ||||||| |||||||||||| |||| |||||||||||||||
Sbjct 52 --C---TTCA-ATCCGAC-GGGAAAAGGAGTTCCGACAAAAATCAAGAACTGAAAGATTT 104
Query 122 GTCATTTGTCTCTCAAATATCTGTGGAGAGAAGAGAAA-T-TGGAATAAAGAAGACAGTG 179
||||||||||||||||||||||| |||||||||||||| | | ||| ||||||||||||
Sbjct 105 GTCATTTGTCTCTCAAATATCTGCGGAGAGAAGAGAAATTATCAAATCAAGAAGACAGTG 164
Query 180 TTGTgagagagagagagagagagagagaTGAGTTCGTCTCTACCTCTGAGGCTA---CTT 236
|||| | | |||||||||||||||||||||||||||||||| |||
Sbjct 165 TTGT--------------G-G-GAGAGATGAGTTCGTCTCTACCTCTGAGGCTACTTCTT 208
Query 237 CTTCCTCTTACAACTTCTCTGATTTctcctcctcctcctcctccAGATTCTTTCCATGCT 296
|||||||||||||||||||||| || | |||||||| | || ||||||||||||||||||
Sbjct 209 CTTCCTCTTACAACTTCTCTGA-TT-T-CTCCTCCT-C-CC-CCAGATTCTTTCCATGCT 262
Query 297 CCTTCGT-CGTTCAGATCGAAAAACCCTAATTTCAAACGCCGATTG------------TC 343
||||| | |||||||||||||||||||||||||||| ||||||||| ||
Sbjct 263 CCTTC-TCCGTTCAGATCGAAAAACCCTAATTTCAATCGCCGATTGTCTTCTTCTTCTTC 321
Query 344 TTCTTC-T-T-CCTGTTGTTCTTCCCAGTCGCAGCTTTTCTCTGGGAGATGCAGATCCTA 400
|||||| | | ||| ||||||||||||||| |||||| |||||||||||| ||||||||
Sbjct 322 TTCTTCTTCTACCTCTTGTTCTTCCCAGTCACAGCTTCTCTCTGGGAGATTCAGATCCTC 381
Query 401 TTCGCGGTGTGTTACCATGTGCTTACCAGAACACATGAGAAATCAAGAGAACACAGAAAT 460
||| | ||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 382 TTCTCCGTGTGTTACCATGTGCTTACCTGAACACCCGAGAAATCAAGAGAACACAGAAAT 441
Query 461 CTTGACAGATAAAGATGACCACATTGAATGTGTGCTTGAATCGGATGAAGATTCTGGCCT 520
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 442 CTTGACAGATCAAGATGACCACATTGAATGTGTGCTTGAATCGGATGAAGATTCAGGCCT 501
Query 521 CAGGATTCCGACTCAAGCACAGGCTATCGTTGAAGGATCTGGTTCAGTTGCAGTGTCAGA 580
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 CAGGATTCCGACTCAGGCACAGGCTATCGTTGAAGGATCTGGTTCAGTTGCAGTGTCAGA 561
Query 581 GCTAAAACCCGCTGCTGATGTAGATTACATACAAGAGCTATTGGCGATACAGCAGCAAGG 640
||||||||| || ||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 562 GCTAAAACCGGCCGCTGATGTAGATTACATACAAGAGCTATTAGCGATACAACAACAAGG 621
Query 641 TCCTAGATCAATTGGCTTCTTTGGGACAAGAAATATGGGTTTCATGCATCAAGAACTGAT 700
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GCCTAGATCAATTGGCTTCTTTGGGACAAGAAATATGGGTTTCATGCATCAAGAACTGAT 681
Query 701 TGAGATACTTAGCTACGCCATGGTTATAACCAAAAATCATATATACACATCAGGTGCATC 760
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 682 TGAGATACTTAGCTACGCCATGGTTATAACTAAAAATCATATATACACATCAGGTGCATC 741
Query 761 TGGAACTAATGCTGCAGTCATCAGAGGTGCATTGAGAGCAGAGAGACCAGAGCTGCTTAC 820
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 TGGAACTAATGCGGCAGTCATCAGAGGTGCATTGAGAGCAGAGAGACCAGAGCTGCTTAC 801
Query 821 AGTAAT-TCTACCCCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAAGAACTATTGTCTA 879
|||||| | ||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 802 AGTAATAT-TACCCCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAGGAACTCTTGTCTA 860
Query 880 AAGTACAAAACGTGGTAGAAAAGCCACATAATGACCATTTGCCATTGTTAGAAGCCAGCA 939
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 861 AAGTACAAAACGTGGTAGAAAAGCCACACAATGACCATTTGCCATTATTAGAAGCCAGCA 920
Query 940 GGTTGTGTAATATGGACATCATATCACAAGTTCAACAAGTGATCTGCTTCGCGTTTCATG 999
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 921 GGCTGTGTAATATGGACATCATATCACAAGTACAACAAGTGATCTGCTTCGCGTTTCATG 980
Query 1000 ACAGTAAGCTTCTTATGGAGACATGTCAAGAAGCCAAAAATCTGCGCAAGATTGTCACTC 1059
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 981 ACAGTAAGCTTCTCATGGAGACATGTCAAGAAGCTAAAAATCTACGCAAGATTGTCACTC 1040
Query 1060 TCTTCTACCTCGATTGATTCACATTCACTCTTT-ATTTTCTTCTCGTTACAAAACAGAGA 1118
|||||||||||||||||||| | | |||||||| || |||||||||||||||||||||||
Sbjct 1041 TCTTCTACCTCGATTGATTCTC-T-CACTCTTTTATCTTCTTCTCGTTACAAAACAGAGA 1098
Query 1119 AGATAA--T---CCTCCTTGTAAATTATGAA--TCTT---GATTAAACAAACACACACAA 1168
|| ||| | |||| |||||||||||||| |||| |||||||||||||||||||
Sbjct 1099 AGCTAAGATAAGCCTCGTTGTAAATTATGAAAATCTTCTTGATTAAACAAACACACACA- 1157
Query 1169 CCAC-AATTATATTCTTTTGTCTAAATTTTGATACACATCAGTGCTATTTTTATAGGATT 1227
| || ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1158 CAACCAATTATATTCTTTTGTCTAAATTTTGACACACATCAGTGCTATTTTTATAAGATT 1217
> Ahg939018 jgi|Araly1|939018|scaffold_503209.1
Length=911
Score = 680 bits (368), Expect = 0.0
Identities = 500/564 (89%), Gaps = 8/564 (1%)
Strand=Plus/Plus
Query 519 CTCAGGATTCCGACTCAAGCACAGGCTATCGTTGAAGGATCTGGTTCAGTTGCAGTGTCA 578
||| ||||||| || ||||| |||||||||||||||||| ||||||||||||| |||||
Sbjct 334 CTCCGGATTCCAACACAAGCTCAGGCTATCGTTGAAGGACCTGGTTCAGTTGCTGTGTCG 393
Query 579 GAGCTAAAACCCGCT-GCTGATGTAGATTACATACAAGAGCTATTGGCGATACAGCAGCA 637
|||||| | || | | ||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct 394 GAGCTACAGCCAG-TCCCTGATGTAGATTATATACAAGAGCTGTTGGCTATACAGCAACA 452
Query 638 AGGTCCTAGATCAATTGGCTTCTTTGGGACAAGAAATATGGGTTTCATGCATCAAGAACT 697
||| || ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 453 AGGACCAAGAACAATTGGCTTCTTTGGAACAAGAAATATGGGTTTCATGCATCAAGAGCT 512
Query 698 GATTGAGATACTTAGCTACGCCATGGTTATAACCAAAAATCATATATACACATCAGGTGC 757
||| |||| |||||||| |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 513 CATTCAGATTCTTAGCTATGCCATGGTTATAACTAAAAACCATATCTACACATCAGGTGC 572
Query 758 ATCTGGAACTAATGCTGCAGTCATCAGAGGTGCA-TTGAGAGCAGAGAGACCAGAGCTGC 816
| ||||||| ||||| || || || ||||||||| || |||||||| ||||| ||||| |
Sbjct 573 AGCTGGAACCAATGCAGCTGTTATAAGAGGTGCACTT-AGAGCAGAAAGACCGGAGCTTC 631
Query 817 TTACAGTAATTC-TACCCCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAAGAACTATTG 875
||||||| | || |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 632 TTACAGTTA-TCTTACCTCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAGGAACTATTG 690
Query 876 TCTAAAGTACAAAACGTGGTAGAAAAGCCACATAATGACCATTTGCCATTGTTAGAAGCC 935
|| ||||||||||| ||| |||||||||| || || |||||||| ||||| |||||||||
Sbjct 691 TCAAAAGTACAAAATGTGATAGAAAAGCCTCACAACGACCATTTACCATTATTAGAAGCC 750
Query 936 AGCAGG-TTGTGTAATATGGACATCATATCACAAGTTCAACAAGTGATCTGCTTCGCGTT 994
|||||| || ||||| |||||||||||||||||||| |||||| | |||||||| |||||
Sbjct 751 AGCAGGCTT-TGTAACATGGACATCATATCACAAGTGCAACAAATAATCTGCTTTGCGTT 809
Query 995 TCATGACAGTAAGCTTCTTATGGAGACATGTCAAGAAGCCAAAAATCTGCGCAAGATTGT 1054
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 810 TCATGACAGTAAGCTTCTCATGGAGACATGTCAAGAAGCCAAAAATCTCCGGAAGATTGT 869
Query 1055 CACTCTCTTCTACCTCGATTGATT 1078
|||||||||||||||||||||||
Sbjct 870 TACTCTCTTCTACCTCGATTGATT 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5