BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43950.1
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483513 jgi|Araly1|483513|fgenesh2_kg.4__2573__AT2G43950.1 1840 0.0
> Ahg483513 jgi|Araly1|483513|fgenesh2_kg.4__2573__AT2G43950.1
Length=1287
Score = 1840 bits (996), Expect = 0.0
Identities = 1219/1319 (92%), Gaps = 45/1319 (3%)
Strand=Plus/Plus
Query 20 TTGTACTTGTTAAACTTGAATCCCGTGTTCGCGACTTTGCGATAGATTCTCTCAAATCCA 79
|||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGTACTTGTTACACTCGAATCTCGTGTTCGCGACTTTGCGATAGATTCTCTCAAATCCA 60
Query 80 ATTCCAATGGCGGATCCATCTTCTCAAAACCCTAACCTCGCCACT----C-CC-CCT--- 130
||||||||||||||||||||||||||||||||||||||| ||||| | || |||
Sbjct 61 ATTCCAATGGCGGATCCATCTTCTCAAAACCCTAACCTCACCACTCCCCCTCCTCCTCCA 120
Query 131 CCT-C--CTTCTTCTCCTTCACCAACCCATCAAATTCAATCTGGAACCTCGGAATTATCG 187
||| | ||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 121 CCTCCTTCTTCTTCTCCTTCACCAACCCATCAAATTCAATCTGGTACCTCGGAATCATCG 180
Query 188 CCACCGTCTCGACCGCCTTGCTCTACCTTGTCCTTTCTCAAGACTGCTAACCGACCAAAA 247
|||||| |||| || |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 181 CCACCGACTCGGCCCCCTTGCTCTACCTTGTCCTTTCTCAAGACTGCTAACAGGCCAAAA 240
Query 248 CTCCGTGTGACATCTGAATTCGACAGCGATAGTCTCCTTTTCTTAAACAAAGTGTCTTGT 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCCGTGTGACATCTGAATTCGACAGCGATAGTCTCCTTTTCTTAAACAAAGTGTCTTGT 300
Query 308 AAGCTCTTCGATAACCTTGCCAAGCTTAAACTCTCGTTTCAGAACAATTCCCAGCGCGAG 367
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 AAGCTCTTCGATAACCTCGCCAAGCTCAAACTCTCGTTTCAGAACAATTCCCAGCGCGAG 360
Query 368 ATTTCACAGCCTCAGGTCTCTTTTACTTCCAAACACGTTTCTGTTCTCTATGATGTCGAA 427
||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 361 ATTTCACAGCCTCTGGTCTCGTTTACTTCCAAACACGTCTCTGTTCTCTATGATGTCGAG 420
Query 428 GAGAAGAATACTTTCATTAAGAGCACTCTCGATGTTCACCCGCGTCTTCAGCTCCGAGCT 487
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 GAGAAGAACACTTTCATCAAGAGCACTCTCGATGTTCACCCTCGTCTTCAGCTCCGAGCT 480
Query 488 CTTCATAATGTTAAGGCACAACAAGGAGAAGTTGCTATGGAGGCAAATCTGACTGAACCT 547
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 CTTCATAATGTCAAGGCACAACAAGGAGAAGTTGCTATGGAGGCAAATCTAACTGAACCT 540
Query 548 GGCTACTCTCTGGAGCTTTCATCACCTGTGCCTATTGGTTACCCAAGAGCAACTCTTAAA 607
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 541 GGCTACTCTCTAGAGCTTTCATCACCTGTTCCTATTGGTTACCCAAGAGCGACTCTTAAA 600
Query 608 TTCCCACTTGGCGAAATTTCGTTACAAGAAAAAGATGAGGAGGAGGAGGAGAAGCAGAAA 667
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 601 TTCCCACTTGGCGAAATTTCGTTACAAGAAAAAGAAGATGAGGAGGAGGAGAAGCAGAAA 660
Query 668 AGAACTTTATCTGTTAATGGGATCCTCAAACGTCAAGTTATGAATGGTGTTTGTACCGCT 727
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 661 AGAACTTTATCTGTTAACGGGATCCTCAAACGTCAAGTCATGAATGGTGTTTGTACTGCT 720
Query 728 CTATACACAGATGAAGAGTTGAGGCTGAGATATGCTTATAAGGATGATGCATTGTCTTTC 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTATACACAGATGAAGAGTTGAGGCTGAGATATGCTTATAAGGATGATGCATTGTCTTTC 780
Query 788 ATCCCAAGTATTTCCCTTCCTTCCAATGCTGCATCATTTGCATTCAAACGGCGGTTTAGC 847
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 ATCCCCAGCATTTCCCTTCCTTCCAATGCTGCATCATTTGCATTCAAACGTCGGTTTAGC 840
Query 848 CCTTCAGATAAGTTGAGCTATTGGTACAACTTTGATTCAAACATGTGGAGTGCTGTGTAC 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCTTCAGATAAGTTGAGCTATTGGTACAACTTTGATTCAAACATGTGGAGTGCTGTGTAC 900
Query 908 AAACGCACATATGGTAAAGACTACAAATTAAAAGCTGGCTATGATTCTGATGTTCGCCTT 967
||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 901 AAACGAACATATGGTAAAGACTACAAACTCAAAGCTGGCTATGATTCTGATGTACGCCTT 960
Query 968 GGCTGGGCATCTCTCTGGGTTGGTGATGAAGCTGGAAAAGTGAAAACGACACCAATGAAG 1027
|||||||||||||||||||| || || |||||||||||||||||| |||| |||||||||
Sbjct 961 GGCTGGGCATCTCTCTGGGTGGGGGACGAAGCTGGAAAAGTGAAAGCGACGCCAATGAAG 1020
Query 1028 ATGAAAGTCCAGTTCATGCTTCAAGTTCCACAAGATGACATCAAATCATCAGTCTTGATG 1087
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1021 ATGAAAGTCCAGTTCATGCTTCAAGTTCCACAAGATAACATCAAATCATCAGTCTTGATG 1080
Query 1088 TTCCGAGTCAAGAAAAGATGGGACATTTGATGAAATCTTTGAATAAATCATCTCTTAGTT 1147
||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||
Sbjct 1081 TTCCGAGTCAAGAAAAGATGGGACATTTGATGATATCTTTGAATA--TC-TCTCT--GTA 1135
Query 1148 TCACTTTCTTTAATCTCTCTATAAAACCCATAAAAGTTGTTTGTTTCTCCTTATATATCA 1207
| || | | | |||||| ||||||| |||||||||||||||||
Sbjct 1136 --A--------AA-C-C-C-ATAAAA---------GTTGTTTCTTTCTCCTTATATATCA 1172
Query 1208 AATCTTTTGCAAAG-TAGATACAAAAGCTTAGAGTGAATAATTGCAATTGTATTTCTGTA 1266
||||||||||||| ||||||||||| |||||| ||||||||||| |||||||||| ||
Sbjct 1173 AATCTTTTGCAAAAATAGATACAAAATATTAGAGAGAATAATTGCATTTGTATTTCTATA 1232
Query 1267 GCttttttttAAATGATCTTTTTCACACGTGTGAGACTAGTATAAATGTTGCTAATTTT 1325
|||| ||| |||||| |||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1233 GCTTCTTT--AAATGACCTTTTTCACACGTGAGAGACTA--ATAAATGTTGCTAATTTT 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50360373357
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5