BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43960.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935315 jgi|Araly1|935315|scaffold_403303.1 911 0.0
> Ahg935315 jgi|Araly1|935315|scaffold_403303.1
Length=1181
Score = 911 bits (493), Expect = 0.0
Identities = 719/824 (87%), Gaps = 32/824 (4%)
Strand=Plus/Plus
Query 401 AGCCCAATTTGTGTTGCGGTATGGGCAATATTTTCGGTTGGCTCTACGGGATAGAGTGTC 460
|||||| |||||| |||||||||||| |||||| ||| |||||| ||||||||||||||
Sbjct 372 AGCCCAGTTTGTGGTGCGGTATGGGCGTTATTTTTGGTGGGCTCTGCGGGATAGAGTGTC 431
Query 461 TACTGATACTGAGTTCAAGTTTCTGGATAAGGGAGATTCAAGGGCTCACTTTTTCTCTCT 520
|||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 432 TACTGATACTCAGTTCAAGTTTCTGGATAAGGGAGGTCCAAGGTATCACTTTTTCTCTCG 491
Query 521 TCTTTTTCTTGGGTATAGTCATCTATTAAGGGCTTGGGAATATCCTCTGGTTGGTATGGA 580
| ||| |||| | | |||||||| ||||||||||||||||||||| || | |||||||
Sbjct 492 TATTTGTCTTCAATTTGGTCATCTAATAAGGGCTTGGGAATATCCTCCGGCTAGTATGGA 551
Query 581 TGTTCTTGTTGACGGTTTTCTCAGTGCTTTGAATTCTTTCAAGGAAAAGCTAGAGGGTGA 640
| |||| |||| |||||| ||| |||||| ||| |||||||| |||||||||||| |||
Sbjct 552 AGCTCTTCTTGAAGGTTTTTTCACTGCTTTTAATGCTTTCAAGAAAAAGCTAGAGGATGA 611
Query 641 TGAGGAGCTAGTGGACAAGATTAAGACTGATAGGCATGATTTTGTTGTTTGTGATGAATA 700
||||||||||||||||||| || |||||||||||| ||||||||| ||||||||||| ||
Sbjct 612 TGAGGAGCTAGTGGACAAGGTTGAGACTGATAGGCGTGATTTTGTGGTTTGTGATGAGTA 671
Query 701 TTTTGCTGACCTCGAGAACAAAGCCCTTGAACTCAAACTCAAAACAATGGCTAGGATGCA 760
||||| |||||||||||||||||||||||||||| | || ||||||| | || |||
Sbjct 672 TTTTGTTGACCTCGAGAACAAAGCCCTTGAACTC--ATTC----CAATGGCCATGAGGCA 725
Query 761 TCATCCTCTGAATAAACACGATTCTCAGGGTACACTCAGGGTGCCACCTGTCCTTGTCTT 820
|| |||||||||| |||||||||||||||||||| |||||||||| |||| |||| ||||
Sbjct 726 TCCTCCTCTGAATGAACACGATTCTCAGGGTACATTCAGGGTGCCGCCTGACCTTATCTT 785
Query 821 GTTTAGAGTT-GGAATCCCTCAAGGAGGCATGATGCGCAAGGAGCTTGGT-TTAATGAAG 878
|||||||||| || |||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 786 GTTTAGAGTTAGG-ATCCCTGAAGGAGGCATGATGCGCAAGGAGCTTGGTATT-ATTAAG 843
Query 879 TTCACAGCCATGTTTGTGGTGCGTTATGGGAATGATTTTTGGGATGCTCTGTGGGATAGA 938
||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 844 TTCACAGCCCTGTTTGTGGTGCGGTATGGGAATGAGTTTTGGGATGCTCTGTGGGATAGA 903
Query 939 GTGTCTAGTACTGAAACAGAGTTTCA-GTTTCTGAAGAGGAATCCTGGAAATGATAGAGG 997
||||| |||||| || || |||| ||||||||| | ||||| |||||||||||||||
Sbjct 904 GTGTC---TACTGATACTCAG-TTCACGTTTCTGAAAAAGAATCATGGAAATGATAGAGG 959
Query 998 -A---AT--GCTTCTTTTCTCTCAGCTTCTTCTTGCTTTTGGTAATGTAGTACAA-CCTT 1050
| || ||||||||||||||||||||| ||||| | |||||||||| || || ||||
Sbjct 960 AAGGTATACGCTTCTTTTCTCTCAGCTTCTGCTTGCGTATGGTAATGTAATA-AAGCCTT 1018
Query 1051 GGGGACTG-TGCCCGAGAGAGAGTAACCCGCCCGCTCGTATGGAAGCTGTTCTCGAGGGG 1109
|||||||| || |||||| ||||||||||||| |||||||||||||||||||| | |||
Sbjct 1019 GGGGACTGATG-CCGAGAAAGAGTAACCCGCCGGCTCGTATGGAAGCTGTTCTTAAAGGG 1077
Query 1110 TTTTTCACTGCTTTTAGTGCTTTCAAGAAAAAGCAAGAGGATGAGGAGGACGAGGTAGTG 1169
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1078 TTTTTCACTGCTTTTAATGCTTTCAAGAAAAAGCAAGAGGATGAGGAGGATGAGGTAGTG 1137
Query 1170 AACAAGCTTGTGA-------CTGATAGGCGTGATTTTGTGGTTA 1206
|||||| |||||| ||||||||||||||||||||||||
Sbjct 1138 AACAAGGTTGTGAGTTGTGACTGATAGGCGTGATTTTGTGGTTA 1181
Score = 427 bits (231), Expect = 1e-118
Identities = 321/363 (88%), Gaps = 12/363 (3%)
Strand=Plus/Plus
Query 10 AGAAAACAAA-GAATAAAACTCCACCACCACGTCCAGATGATGATGA-G--CTGAGAAGT 65
|||||| ||| |||| |||||||||||| || ||||||||||||||| | |||||| ||
Sbjct 14 AGAAAA-AAATGAATGAAACTCCACCACTACCTCCAGATGATGATGATGATCTGAGACGT 72
Query 66 ATTATGTTGGAGAGACTTTCAATTGCCGCTGCCAGAGGCGGGTTGGAGATGGAGGAGAAG 125
|| ||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 73 ATCATGTTGGAGAGGCTTTCAATTGCCGCCGCCAGAGGCGGGTTGGAGATGCAGGAGAAG 132
Query 126 CTGAAGTCCAGATTTGTTGGCCTTGATATTCCATCATGCAGCTTTGTGTTCCCTAAAGGT 185
|||||| ||| |||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 133 CTGAAGACCATATTTTTTGGCCTTGATATTCCATCATGCAGCTTTGTGTTCCCCAAAGGT 192
Query 186 CGTGATCACCATATTTACAAGCAAAAAATTGCTGAGTACACCAAGtctcctcctcttcat 245
|||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 193 CGTGATCACCATCTTTACAAGCATAAAATTGCTGAATACACTAAGTCTCCTCCTCTTCAT 252
Query 246 tctcctcctcctc-tc-cC-ACCGGGCCTAGTTGATCAATGCTG-TTTAAAGTATAACC- 300
||||||||||||| || || ||| |||||||||| ||||||| | ||| |||| || ||
Sbjct 253 TCTCCTCCTCCTCCTCTCCCACCAGGCCTAGTTGCTCAATGC-GATTTTAAGTCTAGCCT 311
Query 301 CTCTGGAGCAAGTTGCTATTATCGACGAACTGTCTGCGTTTACAGTTAGAGTCCCTGAAG 360
| | ||||||||||||| ||| | ||||||| | |||||||| ||| ||||||||||||
Sbjct 312 CAC-GGAGCAAGTTGCTCTTAACCACGAACTTTTTGCGTTTAAAGTCCGAGTCCCTGAAG 370
Query 361 GAG 363
|||
Sbjct 371 GAG 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5