BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43970.1
Length=2125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322062 jgi|Araly1|322062|fgenesh1_pm.C_scaffold_4002119 2423 0.0
Ahg939019 jgi|Araly1|939019|scaffold_503210.1 134 3e-30
> Ahg322062 jgi|Araly1|322062|fgenesh1_pm.C_scaffold_4002119
Length=1605
Score = 2423 bits (1312), Expect = 0.0
Identities = 1539/1642 (94%), Gaps = 41/1642 (2%)
Strand=Plus/Plus
Query 188 ATGGCTGATCAACAAACCCTAGATTCCTCTACTCCTCCTCCTACTCAATCCGATGATCTA 247
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCTGATCAACAAACCCTAGATTCGTCTA---CTCCTCCTACTCAATCCGATGATCTA 57
Query 248 TCTCACTCCCACTCTACTTCCTCTACTACTTCAGCTTCTTCTTCCTCAGATCCATCACTC 307
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 58 TCTCACTCCCACTCTACTTCCTCTACTACTTCAGCTTCTTCTTCATCAGATCCATCGCTC 117
Query 308 TTGAGGTCTCTCTCCTTAAGTCGACTCAACGCCGGAGCTCCTGAGTTCGTTCCTGGTCGA 367
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TTAAGGTCTCTCTCCTTAAGTCGACTCAACGCCGGAGCTCCTGAGTTCGTTCCTGGTCGA 177
Query 368 ACTACTCCTCCGCTGCCTCAACCTCCGAGGATGATTATCCCGCCTCCTCCGCCGCACGGT 427
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 178 ACTACTCCTCCGCTACCTCAACCTCCGAGGATGATTATCCCACCTCCTCCACCGCACGGT 237
Query 428 ATGCTTCATATGTATCACCACCAGCCTCCTTTCAATACTCCAGTTCTTGGTCCTGTTCCA 487
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 ATGCTTCATATGTATCACCACCAGCCTCCTTTCAATACTCCGGTTCTTGGTCCTGTTCCA 297
Query 488 ATCCAGCCACACTTGGTTCCTGTtcaaaatcaccaccctcatcatcgctttcatcagcat 547
|||||||| |||||||| ||||||||||| || || |||||||||||| || | |||
Sbjct 298 ATCCAGCCTCACTTGGTCCCTGTTCAAAACCATCATCCTCATCATCGC-TT--T---CAT 351
Query 548 catcatcacaatcgtcatcagaatcaGCAATATGTCCCGGTGAGGAATCACGGAGAGTAT 607
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 352 CATCATCACAATCGTCATCAGAATCAGCAATATGTTCCGGTGAGGAATCACGGAGATTAT 411
Query 608 CAGCAGCGTGGTGGTGTCGGTGGTGAGCAGGAACCGGATTTGGTTTCAAAGAAGAATGAT 667
||||||| || |||||||| |||||||||||||||||| | |||||||| |||
Sbjct 412 CAGCAGC--------GT-GGTGGTGACCAGGAACCGGATTTGGTTCCGAAGAAGAACGAT 462
Query 668 CGGAGAGATCATAGTAAGAGAGAATCTAAGAACGATCAAG-TGACTGAAACTGGAGCTTC 726
||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||
Sbjct 463 CGGAGAGATCATAGTAAGAGAGAATCTAAGACCGATCAAGCT-ACTGAAACTGGAGCTTC 521
Query 727 TGTTTCTATTGATTCAAAAACTGGTTTGCCTGAAGATTCTATCCAGAAGATTGTGAATCA 786
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 522 TGTTTCTATTGATTCTAAAACTGGTTTACCTGAAGATTCTATCCAGAAGATTGTGAATCA 581
Query 787 GGTTGAATACTATTTCAGTGACTTGAACTTGGCTACTACAGATCATCTCATGAGATTCAT 846
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 582 GGTTGAATACTATTTCAGTGACTTGAACTTGGCGACAACAGATCATCTCATGAGATTCAT 641
Query 847 TTGCAAGGATCCTGAAGGATATGTGCCTATTCATGTTGTTGCGTCGTTCAAGAAAATTAA 906
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 642 TTGCAAGGATCCTGAAGGATATGTGCCTATTCATGTTGTTGCATCGTTCAAGAAAATTAA 701
Query 907 AGCTGTCATTAACAATAATTCTCAGCTTGCCGCAGTGCTACAGAACTCAGCTAAGCTTTT 966
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 702 AGCTGTCATTAACAGTAATTCTCAGCTTGCCGCAGTGCTACAGAACTCAGCAAAGCTTTT 761
Query 967 TGTTAGTGAAGATGGAAAGAAAGTGAGACGCATAAGTCCGATTACTGAGTCGGCTATAGA 1026
||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||
Sbjct 762 TGTTAGTGAAGATGGAAAGAAAGTGAGACGCATAAATCCGATCACTGAGTCTGCTATAGA 821
Query 1027 AGAGCTTCAGTCTCGCATTATTGTTGCTGAGAATCTCCCTGAGGATCATTGCTACCAAAA 1086
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 822 AGAGCTCCAGTCTCGCATTATTATTGCTGAGAATCTACCTGAGGATCATTGCTACCAAAA 881
Query 1087 CCTGATGAAGATTTTTTCAACTGTTGGAAGTGTGAAGAACATCCGTACCTGCCAGCCTCA 1146
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 882 TCTGATGAAGATTTTCTCAACTGTTGGAAGTGTGAAGAACATCCGTACCTGCCAGCCACA 941
Query 1147 AAATAATGGAAGCGGTGCTCCACCCGCAGCGAGATCAGCAGCTAAAAGCGATGGTACGCT 1206
||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 942 AAATAATGGAAGCAGTGCTCCACCCGCAGCAAGATCAGCAGCCAAAAGCGATGGTACGCT 1001
Query 1207 TTTCAGTAACAAGGTCCATGCTTTTGTTGAGTATGAGATTGTTGAGCTAGCCGAGAGAGC 1266
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 1002 TTTCAGTAACAAGGTCCATGCTTTTGTTGAGTATGAGATGGTTGAACTAGCCGAGAAAGC 1061
Query 1267 AGTTACCGAGTTAAGTGAAGCGGGAAATTGGAGGAGCGGTCTTAAAGTCCGGTTGATGCT 1326
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 AGTTGCCGAGTTAAATGAAGCGGGAAATTGGAGGAGCGGTCTTAAAGTCCGGTTGATGCT 1121
Query 1327 AAAGCATCAGACGAAGGAACCAAAACAAGGTCAAGGGCGAGGAAGAAAAGGACATGATGC 1386
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 AAAGAATCAGATAAAGGAACCAAAACAAGGTCAAGGGCGAGGAAGAAAAGGACATGATGC 1181
Query 1387 AGATGTAGAACATGAGGAAGATGATGCTACAACATCCGAGCAGCAGCCGATTGAGAAACA 1446
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 AGAAGTAGAACATGAGGAAGATGATGCTACAACATCCGAGCAGCAGCCGATTGAGAAACA 1241
Query 1447 ATCTGATGACTGTTCTGGGGAATGGGATACACATATGCAAGAGCAGCCAATA---GGAGA 1503
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1242 ATCTGAAGAGTGTTCTGGGGAATGGGATACACATATGCAAGAGCAGCCAATAATAGGAGA 1301
Query 1504 GGATCAAGGGAATGAGAAAGCGGCTGGGCAGAGAAAAGGGCGTAACAGAGGTAGAGGAAA 1563
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1302 GGATCAAGGGAATGAGAAAGCGGGTGGACAGAGAAAAGGGCGTAACAGAGGTAGAGGAAA 1361
Query 1564 GGGACGAGGACGAGGGcaaccacaccagaaccaaaaccagaacaacaaccacagccataa 1623
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1362 GGGACGAGGACGAGGTCAACCACACCAGAACCAGAACCAGAACAACAACCACAGCCA--- 1418
Query 1624 ccaaaaccacaaccacaaTGGGCGAGGAAatcatcatcatcatcatcatcatcaAGTGGG 1683
| || |||| ||||||||||| ||||||||||||||||||| | |||||
Sbjct 1419 C-AA--CCACTACCACAATGGGAGAGGAAATCATCATCATCA--A----------GTGGG 1463
Query 1684 AACACAACCTTCGAACAATCCAATGAACAACATGGAGCAACCAGGCATGGGGAAACAGCA 1743
||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1464 AACACCACCTTCAAACAATCCAATGAACAACATGGAGCAACCAGGCATGGGGAAGCAGCA 1523
Query 1744 ACCACCTGGACCACGAATGCCTGATGGGACCAGAGGATTCTCAATGGGACGGGGAAAGCC 1803
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1524 ACCACCTGGACCACGAATGCCTGATGGGACGAGAGGATTCTCGATGGGACGGGGAAAGCC 1583
Query 1804 GGTTATGGTTCAGGCAGAGTGA 1825
||| ||||||||||||||||||
Sbjct 1584 GGTCATGGTTCAGGCAGAGTGA 1605
> Ahg939019 jgi|Araly1|939019|scaffold_503210.1
Length=1255
Score = 134 bits (72), Expect = 3e-30
Identities = 212/273 (78%), Gaps = 35/273 (13%)
Strand=Plus/Plus
Query 188 ATGGCTGATCAACAAACCCTAGATTCCTCTACTCCTCCTCCTACTCAATCCGATGATCTA 247
||||||||||||||||||||||||| ||| || ||||| | |||||||||||| |
Sbjct 22 ATGGCTGATCAACAAACCCTAGATT-CTC--CTACTCCT-C--CTCAATCCGATG----A 71
Query 248 TCTCACTCCCACTCTACTTCCTCTACTACTTCAGCTTCTTCTTCCTCAGATCCAT-CACT 306
|| | || ||| || ||| | ||| ||| ||||||||||| ||| ||| | | ||
Sbjct 72 TC-C-CT----CTC-AC-TCC-C-ACT-CTT---CTTCTTCTTCCCCAGCTCC-TACCCT 116
Query 307 CTTGAGGTCTCTCTCCT-TAAGTCGACTCAACGCCGGA-GCTCCTGAGTTCGTTCCTGGT 364
||| || || |||||| | ||||| ||||| | | | |||||||||||||||||||||
Sbjct 117 CTTAAGAACTTTCTCCTCT-AGTCGCCTCAATG-CTAATGCTCCTGAGTTCGTTCCTGGT 174
Query 365 CGAACTACTCCTCCGCTGCCTCAACCTCCGAGGATGATTATCCCGCCTCCTCCGCCGCA- 423
||||||||||| ||| ||||||| || ||||||||| ||||| ||||| || || |
Sbjct 175 CGAACTACTCCGCCGTTGCCTCAGCC---GAGGATGATGATCCCACCTCCGCCTCCTCCT 231
Query 424 CGGTATGCTTCATATGTATCACCACCAGCCTCC 456
| || | ||||||||||| ||||||| |||||
Sbjct 232 CTGTTT-CTTCATATGTACCACCACCCTCCTCC 263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79951424255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5