BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43980.1
Length=1691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483517 jgi|Araly1|483517|fgenesh2_kg.4__2577__AT2G43980.1 2608 0.0
> Ahg483517 jgi|Araly1|483517|fgenesh2_kg.4__2577__AT2G43980.1
Length=1657
Score = 2608 bits (1412), Expect = 0.0
Identities = 1592/1675 (95%), Gaps = 27/1675 (2%)
Strand=Plus/Plus
Query 1 ATTTATTCTTTTGTTCCTCAGCTGAGAGAGAAGAA-GAACGATGAAAGGGGTTCTACTTG 59
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1 ATTTATTCTTTTGTTCCTCAGCTGAGAGAGAAGAACG-ATGATGAAAGGGGTTCTACTTG 59
Query 60 ACGAATCTGTACTGTTTAGTCCTGAGAGTGAAGATTCTTCGCCAAGTCTGCGAGAATCAG 119
||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 60 ACGAATCTGTACTGTTTAGTCCTAAGAGTGAAGATTCTTCGCCGAGTCTGCGGGAATCAG 119
Query 120 TCCCGTCGCTTCTCAGGCTGCTTCGTTATTCCATGATCCGAACGGGGATTTCATATGGAC 179
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 120 TCCCGTCGCTTCTCAGGCTGCTTCGTTATTCCATGATCCGAACGGGAATTTCATATGGAC 179
Query 180 TTGATCTTCCGGAAAACAAGGTGGATCTACTGAGGAAAACGGCAGCAGAATACTCGATCA 239
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 180 TTGATCTTCCGGAAAACAAGGTGGATTTACTGAGGAAAACGGCAGCAGAATATTCGATTA 239
Query 240 ATTGCTTGCCTTTAGAGACGTCTCTTACGAGTGTTACCTTTGGTGATACTCTCAAAGCAT 299
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 240 ATTGCTTACCTTTAGAGACGTCTCTGACAAGTGTTACCTTTGGTGATACTCTCAAAGCAT 299
Query 300 GGTATAGTGACGGTAGTATTCTGTATGTTGCTTCAAGCAGAAAGGAAGAGATACTGCGTG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGTATAGTGACGGTAGTATTCTGTATGTTGCTTCAAGCAGAAAGGAAGAGATACTGCGTG 359
Query 360 AACTTAGTCCCAGTCAGCTAGTTGTTTTACTCGATGTTG---AAGGCGATTCACTTGAGG 416
|||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||
Sbjct 360 AACTTAGTCCCAGTCAGCTAGTTGTTCTACTCGATGTTGTACAAGGCGATTCACATGAGG 419
Query 417 ATCCTAACATAATTCATATCCATAGTCTTGAGGAGCTGCCAATGACTATTTGCTGCATAA 476
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 ATCCTAACATGATTCATATCCATAGTCTTGAGGAGCTGCCGATGACTATTTGCTGCATAA 479
Query 477 ACAAAAAGGCAATGGGTGATGGTGCTGCAATAGTTGCTTACATCATGAAGCCATCTCGGG 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACAAAAAGGCAATGGGTGATGGTGCTGCAATAGTTGCTTACATCATGAAGCCATCTCGGA 539
Query 537 TAGAGGACTTTGCCAAGAGGGGTGCTTTACCCATGTATCCTACTTCATGTGGGTTGATAT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TAGAGGACTTTGCCAAGAGGGGTGCTTTACCCATGTATCCTACTTCATGTGGGTTGATAT 599
Query 597 TTCTGCCCCTCATGTTTGAGTTCCCTCTTGCATCTCAACTCAAACACGCTGATATCATTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCTGCCCCTCATGTTTGAGTTCCCTCTTGCATCTCAACTCAAACACGCTGATATCATTT 659
Query 657 TCCACAAAGCAACTGATGAAATCTTGTCCATTGAACTGAACTGCTCCGACTCAAAATCAT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCCACAAAGCAACTGATGAAATCTTGTCCATTGAACTGAACTGCTCCGACTCAAAATCAT 719
Query 717 CTGTTGCAGTTACATTCTCTACCGGCATGGAGAAACTGAAAAAGTATATGGAAGATCAAA 776
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 720 CTGTTGCAGTTACATTCTCTACCGGCATGGAGGAACTGCGAAAGTATATGGAAGATCAAA 779
Query 777 ATGCTTGTGCCATAGTCGACCCTATTCGAAATATATATCCAGTCGTAGACCGACTCAAGA 836
||||||||||| ||||||||||||||| |||||||||| | ||| | |||||||||||||
Sbjct 780 ATGCTTGTGCCGTAGTCGACCCTATTCAAAATATATATTCTGTCCTGGACCGACTCAAGA 839
Query 837 TGCAACATATTCTTCTTGGATTAGAGGGCCTTGGTGCAGCAGGACGAAAGATAAGAGGTG 896
||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct 840 TGCAACATATTCTTCTTGGATTAGAGGACCTTACTGCAGCAGGACGGAAGATAAGAGGCG 899
Query 897 CCTGCTTTCTCAAGATTGACAGCTATGATGAACCAGATCTGGCTCAGAACTTGTCAAGAG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 CCTGCTTTCTCAAGATTGACAGCTATGATGAACCAGATCTGGCTCAGAACTTGTCAAAAG 959
Query 957 CTGGACTCTCTCTTCCATGTATTGTGAAACCACAGGTTGCCTGTGGTGTTGCTGATGCTC 1016
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 960 CTGGACTCTCTCTTCCATCTATTGTGAAACCTCAGGTTGCCTGTGGTGTTGCTGATGCTC 1019
Query 1017 ACAGCATGGCCATTGTCTTCCGAGTCGAGGATTTTAAGAATCTGAACACTCCTGTTCCTG 1076
||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct 1020 ACAGCATGGCCATTGTCTTCCGAGTGGAGGATTTTAAGGATTTGAACACTCCTGTTCCTG 1079
Query 1077 CCATTATCCAAGAGTATGTGGACCATTCATCTAGGATTTTTAAGTTTTACGTCTTGGGGG 1136
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 1080 CCATTATCCAAGAGTATGTGGACCATTCATCCAGGATTTTCAAGTTTTACGTGTTGGGGG 1139
Query 1137 AAACGATCTTTCACGCGGTCAAGAAATCGATCCCTAGTTCTTCTAGTCTGAGGAAATCAG 1196
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1140 AAAAGATCTTTCACGCGGTCAAGAAATCGATCCCTAGTTCTTCTAGTCTGAGGAAAACAG 1199
Query 1197 CGGAGGAAAATGGTCTCAAACCAATTCTCTTTGACAGCTTAAAATCGTTACCTGTT-GAT 1255
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1200 CCGAGCAAAATGGTCTCAAACCAATTCTCTTTGACAGCTTAAAATCGTTACCTGTTAG-T 1258
Query 1256 TCCGCAAACCAGAACCCGGTAAGCGAGATTGATCTAGAGCTAGTTACAGAAGCAGCTACC 1315
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1259 TCCGCAAACCAGAACCCGGTAAACGAGATTGATCTAGAGCTAGTTACAGAGGCAGCTACC 1318
Query 1316 TGGCTAAGAAAGAAGCTTGATCTCACAATCTTCGGCTTTGACGTAGTTATTCAAGAAGGA 1375
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1319 TGGCTCAGAAAGAAGCTTGATCTCACAATCTTCGGCTTTGACGTGGTTATTCAAGAAGGA 1378
Query 1376 ACAGGAGATCACGTGATAGTAGACTTGAACTACTTACCATCCTTTAAAGAAGTTCCGGAT 1435
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 1379 ACAGGAGATCACGTGATAGTAGACTTGAACTACTTACCATCGTTTAAAGAAGTCCCTGAT 1438
Query 1436 AACATCGCAGTTCCTGCATTCTGGGAAGCCATCAGAAACAGATTCGACCAACATGTCCAA 1495
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AACATGGCAGTTCCTGCATTCTGGGAAGCCATCAGAAACAGATTCGACCAACATGTCCAA 1498
Query 1496 GAGAAGCATTGAATCCAACATTGTGGGAAGCGAAA----CTCTTCTGTCTGTTTATTTTA 1551
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1499 GAGAAGCATTGAATCCAACATTGTGGGAAACGAAAAGAACTCTTCTGTCTGTTTATTTTA 1558
Query 1552 GGAATGACCTGAAGCTGCTTTATGCTTCATACTCTGAGACTAATAATAATTGAGAAACAT 1611
||||||||||||||||||||||||||||| |||| |||||||||||| || | |
Sbjct 1559 GGAATGACCTGAAGCTGCTTTATGCTTCAGACTCCGAGACTAATAAT--TT-A------T 1609
Query 1612 CTTTTATGGAATTTTGTAATTTTAAGACCAAACAAGTGAAGttttttttCTTTTG 1666
|||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1610 -------GGAATTTTGTAATTTTAAGACCAATCAAGTGAAGTTTTTTTTTTTTTG 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63420257925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5