BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43990.1
Length=1999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483518 jgi|Araly1|483518|fgenesh2_kg.4__2578__AT2G43990.1 2966 0.0
> Ahg483518 jgi|Araly1|483518|fgenesh2_kg.4__2578__AT2G43990.1
Length=1956
Score = 2966 bits (1606), Expect = 0.0
Identities = 1855/1974 (94%), Gaps = 21/1974 (1%)
Strand=Plus/Plus
Query 29 TTTTTGGTCGAATGCT-CATAGGATGAATCGAATAACTTCTTCTTCAAATGCGCAAACGA 87
|||||||||||||| | | || |||||||||||||| |||||||| ||||| |||||||
Sbjct 1 TTTTTGGTCGAATG-TCCGCAGAATGAATCGAATAACGTCTTCTTCCAATGCCCAAACGA 59
Query 88 AGAAATTTCCTCAGTCTCAGCCACAGCCGCCGGAGAAAAATGAGAAAAAACTGAAAAGGG 147
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||
Sbjct 60 AGAAATTTCCTCAGTCTCAGCCGCAGCCGCCGGAGAAAAAGGAGAAAAACCTGAAAATGG 119
Query 148 AGAGATTTCCGGTGAACCCTTTGAGAGATTTCAGTACAAGAAGCTCTGGAAGCAGCAGTT 207
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||
Sbjct 120 AGAGATTTCCGGTGAACCCTCTGAGAGGTTTCAGTACAAGAAGCTCTGGAAGCAGTAGTA 179
Query 208 GTAGCAATGTGAGTGCTTCTGGTTCAACTTCCGGTGAAGCATCCAACGGTTGTCACAGGt 267
| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 GCAGCAATGTGAGTGGTTCTGCTTCAACTTCCGGTGAAGCATCCAACGGTTGTCACAGG- 238
Query 268 tcttgctctctcattctttctcatcgtcttcttcatcatcttcttcttcGTTGGGAGTTT 327
| || | | || ||||||| || | ||| |||||||||||||||||||||||||
Sbjct 239 T-TT--T-T-GCA----TTCTCAT--TC-T-TTC-TCATCTTCTTCTTCGTTGGGAGTTT 284
Query 328 TTCCTCGTAGACCAGTGAGA-TCAGTAGCTAAAAACCCCAAATCTGCTCCGGTAGTTAGT 386
|||||||||||||||||| | ||||| ||||||| ||||||||||||||| || || |||
Sbjct 285 TTCCTCGTAGACCAGTGA-ATTCAGTTGCTAAAACCCCCAAATCTGCTCCAGTTGTGAGT 343
Query 387 AAACCCTTAATTAGAAAGAAACCAAGCTCTCTTGAGGAGGTTAAGTTGAAA-TCTACTCT 445
||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||
Sbjct 344 AAACCCTTAATTAGAAAGAAACCAAGCTCTCTTGAGGAGGTTAAGCT-AAAGTCCACTCT 402
Query 446 TACTGAGAAACCTAATTTGCTGAAGTCTCAGAGATGCAAGACAAATCCTGTATCTGGAAA 505
|||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 403 TACTGAGAAACCCAATTTGCAGAAATCTCAGAGATGTAAGACAAATCCTGTATCTGGAAA 462
Query 506 GAGACCAACTTGTAAGATTACCATGAAACCGGAGAAAGTTTCGGTTTTGAAGAAACAATC 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GAGACCAACTTGTAAGATTACCATGAAACCGGAGAAAGTTTCGGTTTTGAAGAAACAATC 522
Query 566 TTCTGTTTCTAGAAATGTTAAGCTTAAAGATAGCCAAACTACGATTAGAGTAGATGACAG 625
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 523 TTCTGTTTCTAGAAATGTTAAGCTTAGAGATCGCCAAACTACGATTAGAGTAGATGACAG 582
Query 626 TATTGCTCAGAGTACTCCTGTTTCTAAATTAGAAACTGGATCTGATTTGATTTATAGAAG 685
||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 583 TATTGCTCAGAGTACTCCTGTGTCTAAATTAGGAACCGGATCTGATTTGATTTATAGAAG 642
Query 686 GAAGAGTGAAGCTACTGATGATGGTAGACTAAGTAGCAACAGTAGTAGTTATCAAGATAG 745
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 643 CAACAGTGAAGCTACTGATGATGGTAGACTAAGTAGCAACAGTAGTAGTTATCAAGACAG 702
Query 746 GACACCACCTGTTCAAGCTTCGGTGTCTCCAGAGATACAGTGTGGATCGTCTATGAATCT 805
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 703 GACACCACCGGTTCAAGCTTCGGTGTCTCCAGAGATACAATGTGGATCGTCTATGAATTT 762
Query 806 GTCTGCATCAGCTCAATCACAAGCTTGTTATGCTGCTGGACATTTACTCTCAGGTGTTAG 865
|||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 763 GTCTGCATCAACTCAATCACAAGCTTGTTATGCTGCTGGGCATTTACTCTCTGGTGTTAG 822
Query 866 TGATAAGAGGAAATGCAAGCCTAAGGGGATACTCACTGTGGGTGAAAATGGTTTTGAGGT 925
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 823 TGATAAGAGGAAGTGCAAGCCTAAGGGGATTCTCACTGTGGGTGAAAATGGTTTTGAGGT 882
Query 926 TGGTAAAGGCAAGATACTGAATGATTCTGATGAATTTGATGAAGGAGATTTTGGTAATGA 985
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TGGTAAGGGCAAGATACTGAATGATTCTGATGAATTTGATGAAGGAGATTTTGGTAATGA 942
Query 986 CGGGAGTTATGATGATATTTCTGTTATGCCTTTGCCTGCGGATGCGTCAGTGCACTGGCT 1045
||| |||| |||| | || ||| | ||||||||||| |||||||||||||||||||||||
Sbjct 943 CGGAAGTTGTGATAACATATCTATCATGCCTTTGCCCGCGGATGCGTCAGTGCACTGGCT 1002
Query 1046 TTTATCTCCTTGTGATGAGGAGAAAGAACATGAGAAGGAAATATCTGATGATGGTTTCTC 1105
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1003 TTTATCTCCTTGTGATGAGGAGAAAGAACATGAGAATGAAAAATCTGATGATGGTTTCTC 1062
Query 1106 TCAGTTTCAGCAAATTGTTGAGTGTGTTGGCCATGAGACTCCTTCGCCACTATCAGATCG 1165
||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1063 CCAGTTGCAGCAAATTGTTGAGTGCGTTGGCCATGAGACTCCTTCGCCAGTATCAGATCG 1122
Query 1166 TAGTGCTTCTTCGGATCTATGCAACATTAGTAGTGGTAGAAGTCTTTCGCCCATGGATAT 1225
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1123 TAGTGCTTCTTCGGATCTATGCAACATTAGTAGCGGTAGAAGTCTTTCGCCCATGGACAT 1182
Query 1226 ATATAAAGAGACAACGAGAAGGATCAGTTCTTCTCTTTCTCCAAATGAACTTTTTCGGTT 1285
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1183 ATATAAAGAGACAACGAGAAGGATCAGTTCTTCGCTTTCTCCAAATGAGCTTTTTCGGTT 1242
Query 1286 CAGAAGATTCATTCACCTTTCATCATGTGATGGTGAAGCTTCAGCATTCGACACTTCCCC 1345
||||||||| ||||||||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 1243 CAGAAGATTTATTCACCTTTCCGCCTGTGATGGTGAAGCTTCAGCATTCGACGCTTCCCC 1302
Query 1346 TACATGTGAGCTAGATCCTTCTGAGCATTTGAAAGGAGACAAATCGTCTCCCTTATCTGT 1405
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TACGTGTGAGCTGGATCCTTCTGAGCATTTGAAAGGAGACAAATCGTCTCCCTTATCTGT 1362
Query 1406 TGATACGCTGGGAAGTGAGAATGTTATTCAAACACCTGAATCCAACTCAAGCTTCGACAA 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 TGATACGCTGGGAAGTGAGAATGTTATTCAAACACCTGAATCCAACTCAAGCTTCGACAA 1422
Query 1466 TTATTTTGGACTCTCATGTTCTCAAGCTGAAATCCAAAAGAAACATGATGTTGGTTCAGA 1525
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1423 TTATTTCAGACTCTCATGTTCTCAAGCTGAAATCCAAAAGAAACATGATGTTGGTTCATA 1482
Query 1526 TTTGGAATCACTGACAATGAAGTTTCAGTCAGCCGGTTTGTCACCAAGGATCCAGGCTTC 1585
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1483 TTTGGAAGCACTGACAATGAATTTTCAGTCAGCCGGTTTGTCACCAAGGATCCAGGCTTC 1542
Query 1586 ATCATGGGAGCCGAGCCGTTCAAGTTTCAACTTCGACTATTTGGCCACATCTTCTGATTC 1645
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1543 ATCACGGGAGCCGAGCCGTTCAAGTTTCAACTTTGACTCTTTGGCCACATCTTCTGATTC 1602
Query 1646 TATTGATCTCTCACAGTTTCAGAGAGGTTTAGTTGACAGGAGTTCTTGTCATCCTCATGT 1705
||||||||||||||||||||| ||| |||||| ||||| |||||| |||||||| ||||
Sbjct 1603 CATTGATCTCTCACAGTTTCAGGGAGCTTTAGTGGACAGAAGTTCTCGTCATCCTTATGT 1662
Query 1706 AACACTGGATAAAGTGTCAAGGACACATTTGAGAGTAGAGCAAACAAATAGCCACATGCC 1765
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1663 AACACTGGATACAGTGTCAAGGACACATGTGAGAGTAGAGCAAACAAATAGCCACATGCC 1722
Query 1766 TGAAATGAAATCCCAACAGATTACAGATACTGAATTTGATATTCAAAATCACAAAGAAAG 1825
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1723 TGAAATAAAATCCCAACAGATTACAGATACTGAATTTGATATGCAAAATCACAAAGAAAG 1782
Query 1826 TGCTGCTTCTCTGGGAAAAGGAAGAGAATTGCTTCCATGCTCTGCTGCAGAGTCAATAAG 1885
||||||| ||||||||| || ||||||||| ||||||| |||||||||||||||||||||
Sbjct 1783 TGCTGCTCCTCTGGGAATAGAAAGAGAATTACTTCCATTCTCTGCTGCAGAGTCAATAAG 1842
Query 1886 CACTGATGGAGGTGGTCTGATTTGTTCTGAGGATTCAAATTGGATGGCATGTTACAAGAA 1945
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 CACTGATGGTGGTGGTCTGATTTGTTCTGAGGATTCAAATTGGATGGCATGTTACAAGAA 1902
Query 1946 TTAACTTCCTAGAAAGAATAGTTTTAGCTTCTGTTTCTTTGTAAGTAGGTCCAC 1999
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1903 TTAACTTCCTAGAAAGAATAGTTTTAGCATCTGTCTCTTTGTAAGTAGGTCCAC 1956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75152053385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5