BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G44000.1 Length=1248 Score E Sequences producing significant alignments: (Bits) Value Ahg483519 jgi|Araly1|483519|fgenesh2_kg.4__2579__AT2G44000.1 1509 0.0 > Ahg483519 jgi|Araly1|483519|fgenesh2_kg.4__2579__AT2G44000.1 Length=1214 Score = 1509 bits (817), Expect = 0.0 Identities = 1122/1257 (89%), Gaps = 69/1257 (5%) Strand=Plus/Plus Query 18 TTCATGATACCTTTCCTTTGTTCCAGGTCTTGGaaaaaagcaaagtatacaaaaggagaa 77 ||||||||||||| ||||||||||||||||| | | || | | |||||||||| Sbjct 1 TTCATGATACCTTCCCTTTGTTCCAGGTCTT-G------G--AA--A-A-AAAAGGAGAA 47 Query 78 acaaagctaaaaagGGTTCTTTTAAGCATCTCTTACTTATTTCGTAAAACACTCATCATC 137 ||||||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||||| Sbjct 48 ACAAAGCTAAAAAGGGTTCTTCTAAGCATCTCTTACTTATTTCGGAAACCACACATCATC 107 Query 138 TTTTAATGTAATGTTGATCAAGAACCCATTCATACTTTCTACTTTCCACATATTCTCAG- 196 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 108 TTTTAATGTAATGTTGATCAAGAACCCATTCATACTTTCAACTTTCCACATATTCTCAGC 167 Query 197 CTTTTTCTGTTGGGATTTGGCTTTGCTGAGTATATATCTTTTTGTTATCATCTAAGTTCC 256 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 168 CTTTTTCTGTTGGGATTTGGCTTTGCTGACTATATATCTTTTTGTTATCATCTAAGTTCC 227 Query 257 TCTTGACAATACTGAAA-AGTTATCGGTCA-AACAATCTCTGAGGG-GAAATGTCTGTTT 313 ||||||||||||||||| ||||||||||| ||||||||||| ||| ||||||| |||| Sbjct 228 TCTTGACAATACTGAAATTGTTATCGGTCATAACAATCTCTG-GGGAAAAATGTCAGTTT 286 Query 314 ATGCTGAAACAGCATATGGAAGAAGGAGCAAAGATGTTGATGAAGCTCGCAGAATTTACC 373 ||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 287 ATGTTGAAACAACATATGGAAGAACGAGCAAAGATGTTGATGAAGCTCACAGAATTTACC 346 Query 374 AACCGAAACAGAGTGACATCACCGGCAAAATCATCATCTTTATCCTTGCAGGGCTTTGCA 433 |||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| Sbjct 347 AACCGAAACAGAGTGATATCACCGGCAAAATGATCATCTTCATCCTTGCAGGGCTTTGCA 406 Query 434 TGCTGCTCTTCATCTTCATCGTCATCGGTTTCTTTTTCATAGCCAAGCCACTGACAGCAA 493 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 407 TGCTGCTCTTCATCTTCATCGTCATCGGTTTCTTTTTCATAGCCAAGCCACTCAAAGCAA 466 Query 494 GCTTGACATCTGTTG-AAGTAAGAAACCTCAGGTACAACAACAATACATCATCATCATCA 552 ||||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||||| Sbjct 467 GCTTGACATCTGTTGCTA-TAAGAAACCTCAGGTACAAAAACGATACATCATCATCATCA 525 Query 553 TCGCTTTACTTTAACGCAACACTGGCTATGGAAATCAGAATTGAGAATCCGAATCTCGGG 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 TCGCTTTACTTTAACGCAACACTGGCTATGGAAATCAGAATTGAGAATCCGAATCTCGGG 585 Query 613 TTCTTCGAGTTTCCCACTAGTAGAGGAGAAATCTTGTACAACGGTGATGTTGTTGGTGAA 672 ||||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||||| Sbjct 586 TTCTTTGAGTTTCCCACTAGTAAAGGAGATATCTTGTACAACGGTCATGTTGTTGGTGAA 645 Query 673 ATGAGGATTAATGGACAACGAGTGGCTTCATTTGGTGACTTAAGAACAGAGGTTAGTG-C 731 ||||||||||||||||||||||||||||||| ||||| | | |||||||| ||||| | | Sbjct 646 ATGAGGATTAATGGACAACGAGTGGCTTCATATGGTGCCATGAGAACAGAAGTTAG-GAC 704 Query 732 AGAAGTGGCTTACAGAGGGAATCAGAAATCACCTGTTTGGTTGAAGAATGATATAGAGAG 791 | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 705 ACAAGTGGGTTACAGAGGGAATCAGACATCACCTGTTTGGTTGAAGAATGATATAGAGAG 764 Query 792 AAGGCTAATAATCCTCGAGACCAGAGCTAAACTAAGAGGTGAAGTGCACTTGAAGGACTT 851 |||| |||||||||||||| ||||||||||||| ||||||||||| |||||||||| ||| Sbjct 765 AAGGTTAATAATCCTCGAGGCCAGAGCTAAACTGAGAGGTGAAGTACACTTGAAGGCCTT 824 Query 852 GAACAAGAGAACAGTGAATTTGAAGTGTTTAATGCAACTTAATCTCAGT-GATGATGTTA 910 |||||||||||||||||||||||||||||||||||| |||||||| | | ||||| |||| Sbjct 825 GAACAAGAGAACAGTGAATTTGAAGTGTTTAATGCATCTTAATCTAA-TAGATGAAGTTA 883 Query 911 TTCATCGTTTGTGGTGTAAATGAAACACACTTAGGTTGTTTCATACTTTTCTTGGGTA-A 969 |||||||||| ||||||||||||||||| ||| || ||| || |||| | | || | Sbjct 884 TTCATCGTTTCTGGTGTAAATGAAACACTCTT---TT-TTT-AT--TTTT-TAGC-TATA 934 Query 970 TTAGTTTTTCTTCTTTAGCTATATTAGCATATTTATAAGTGAATATCAAAATACTTAGGT 1029 ||| || || |||| ||| || |||||||||||| |||||||||||| Sbjct 935 C-AGTATT--------AG-TATA----CAT-TT-ATAAGTGAATATTGAAATACTTAGGT 978 Query 1030 TTCTTTTTTCACAAAAATTGATATTAAAATATCA-G-TTTAT----A--CCAAAATAAAT 1081 ||||||| || |||||||||||| ||||||||| | ||||| | ||||||||||| Sbjct 979 TTCTTTTAACATAAAAATTGATATCAAAATATCATGCTTTATGCTTATACCAAAATAAAT 1038 Query 1082 CTCAAGTTTTACAGTATA-TCAGAA-ATTTAAG---T-G--TGttttttt--CTTTAGGT 1131 ||| |||||||||||| | | | || || |||| | | ||||||||| ||||| | Sbjct 1039 CTCGAGTTTTACAGTAAAGTTA-AATATATAAGAAATTGAGTGTTTTTTTTTCTTTAATT 1097 Query 1132 CTTATCTTTCTAGTTTTGTCACTTTCTTTAATTCTTGTCATCAGATAAAAATGTCGCTTT 1191 |||||||| || |||||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct 1098 CTTATCTTGCTCTTTTTGTCACTTTCTTTAACTCTTATCATCAGATAAAAGTGTCGCTTT 1157 Query 1192 TGAATAATTCAATATGGTTAGTGTTTGTTAGCGTAAGAAACATCATCAGCTTTGTCG 1248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1158 TGAATAATTCAATATGGTTAGTGTTTGTTAGCGTAAGAAACATCATCAGCTTTGTCG 1214 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46624327491 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5