BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44000.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483519 jgi|Araly1|483519|fgenesh2_kg.4__2579__AT2G44000.1 1509 0.0
> Ahg483519 jgi|Araly1|483519|fgenesh2_kg.4__2579__AT2G44000.1
Length=1214
Score = 1509 bits (817), Expect = 0.0
Identities = 1122/1257 (89%), Gaps = 69/1257 (5%)
Strand=Plus/Plus
Query 18 TTCATGATACCTTTCCTTTGTTCCAGGTCTTGGaaaaaagcaaagtatacaaaaggagaa 77
||||||||||||| ||||||||||||||||| | | || | | ||||||||||
Sbjct 1 TTCATGATACCTTCCCTTTGTTCCAGGTCTT-G------G--AA--A-A-AAAAGGAGAA 47
Query 78 acaaagctaaaaagGGTTCTTTTAAGCATCTCTTACTTATTTCGTAAAACACTCATCATC 137
||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |||||||
Sbjct 48 ACAAAGCTAAAAAGGGTTCTTCTAAGCATCTCTTACTTATTTCGGAAACCACACATCATC 107
Query 138 TTTTAATGTAATGTTGATCAAGAACCCATTCATACTTTCTACTTTCCACATATTCTCAG- 196
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 108 TTTTAATGTAATGTTGATCAAGAACCCATTCATACTTTCAACTTTCCACATATTCTCAGC 167
Query 197 CTTTTTCTGTTGGGATTTGGCTTTGCTGAGTATATATCTTTTTGTTATCATCTAAGTTCC 256
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 168 CTTTTTCTGTTGGGATTTGGCTTTGCTGACTATATATCTTTTTGTTATCATCTAAGTTCC 227
Query 257 TCTTGACAATACTGAAA-AGTTATCGGTCA-AACAATCTCTGAGGG-GAAATGTCTGTTT 313
||||||||||||||||| ||||||||||| ||||||||||| ||| ||||||| ||||
Sbjct 228 TCTTGACAATACTGAAATTGTTATCGGTCATAACAATCTCTG-GGGAAAAATGTCAGTTT 286
Query 314 ATGCTGAAACAGCATATGGAAGAAGGAGCAAAGATGTTGATGAAGCTCGCAGAATTTACC 373
||| ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 287 ATGTTGAAACAACATATGGAAGAACGAGCAAAGATGTTGATGAAGCTCACAGAATTTACC 346
Query 374 AACCGAAACAGAGTGACATCACCGGCAAAATCATCATCTTTATCCTTGCAGGGCTTTGCA 433
|||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 347 AACCGAAACAGAGTGATATCACCGGCAAAATGATCATCTTCATCCTTGCAGGGCTTTGCA 406
Query 434 TGCTGCTCTTCATCTTCATCGTCATCGGTTTCTTTTTCATAGCCAAGCCACTGACAGCAA 493
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 407 TGCTGCTCTTCATCTTCATCGTCATCGGTTTCTTTTTCATAGCCAAGCCACTCAAAGCAA 466
Query 494 GCTTGACATCTGTTG-AAGTAAGAAACCTCAGGTACAACAACAATACATCATCATCATCA 552
||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||
Sbjct 467 GCTTGACATCTGTTGCTA-TAAGAAACCTCAGGTACAAAAACGATACATCATCATCATCA 525
Query 553 TCGCTTTACTTTAACGCAACACTGGCTATGGAAATCAGAATTGAGAATCCGAATCTCGGG 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TCGCTTTACTTTAACGCAACACTGGCTATGGAAATCAGAATTGAGAATCCGAATCTCGGG 585
Query 613 TTCTTCGAGTTTCCCACTAGTAGAGGAGAAATCTTGTACAACGGTGATGTTGTTGGTGAA 672
||||| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||
Sbjct 586 TTCTTTGAGTTTCCCACTAGTAAAGGAGATATCTTGTACAACGGTCATGTTGTTGGTGAA 645
Query 673 ATGAGGATTAATGGACAACGAGTGGCTTCATTTGGTGACTTAAGAACAGAGGTTAGTG-C 731
||||||||||||||||||||||||||||||| ||||| | | |||||||| ||||| | |
Sbjct 646 ATGAGGATTAATGGACAACGAGTGGCTTCATATGGTGCCATGAGAACAGAAGTTAG-GAC 704
Query 732 AGAAGTGGCTTACAGAGGGAATCAGAAATCACCTGTTTGGTTGAAGAATGATATAGAGAG 791
| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 705 ACAAGTGGGTTACAGAGGGAATCAGACATCACCTGTTTGGTTGAAGAATGATATAGAGAG 764
Query 792 AAGGCTAATAATCCTCGAGACCAGAGCTAAACTAAGAGGTGAAGTGCACTTGAAGGACTT 851
|||| |||||||||||||| ||||||||||||| ||||||||||| |||||||||| |||
Sbjct 765 AAGGTTAATAATCCTCGAGGCCAGAGCTAAACTGAGAGGTGAAGTACACTTGAAGGCCTT 824
Query 852 GAACAAGAGAACAGTGAATTTGAAGTGTTTAATGCAACTTAATCTCAGT-GATGATGTTA 910
|||||||||||||||||||||||||||||||||||| |||||||| | | ||||| ||||
Sbjct 825 GAACAAGAGAACAGTGAATTTGAAGTGTTTAATGCATCTTAATCTAA-TAGATGAAGTTA 883
Query 911 TTCATCGTTTGTGGTGTAAATGAAACACACTTAGGTTGTTTCATACTTTTCTTGGGTA-A 969
|||||||||| ||||||||||||||||| ||| || ||| || |||| | | || |
Sbjct 884 TTCATCGTTTCTGGTGTAAATGAAACACTCTT---TT-TTT-AT--TTTT-TAGC-TATA 934
Query 970 TTAGTTTTTCTTCTTTAGCTATATTAGCATATTTATAAGTGAATATCAAAATACTTAGGT 1029
||| || || |||| ||| || |||||||||||| ||||||||||||
Sbjct 935 C-AGTATT--------AG-TATA----CAT-TT-ATAAGTGAATATTGAAATACTTAGGT 978
Query 1030 TTCTTTTTTCACAAAAATTGATATTAAAATATCA-G-TTTAT----A--CCAAAATAAAT 1081
||||||| || |||||||||||| ||||||||| | ||||| | |||||||||||
Sbjct 979 TTCTTTTAACATAAAAATTGATATCAAAATATCATGCTTTATGCTTATACCAAAATAAAT 1038
Query 1082 CTCAAGTTTTACAGTATA-TCAGAA-ATTTAAG---T-G--TGttttttt--CTTTAGGT 1131
||| |||||||||||| | | | || || |||| | | ||||||||| ||||| |
Sbjct 1039 CTCGAGTTTTACAGTAAAGTTA-AATATATAAGAAATTGAGTGTTTTTTTTTCTTTAATT 1097
Query 1132 CTTATCTTTCTAGTTTTGTCACTTTCTTTAATTCTTGTCATCAGATAAAAATGTCGCTTT 1191
|||||||| || |||||||||||||||||| |||| ||||||||||||| |||||||||
Sbjct 1098 CTTATCTTGCTCTTTTTGTCACTTTCTTTAACTCTTATCATCAGATAAAAGTGTCGCTTT 1157
Query 1192 TGAATAATTCAATATGGTTAGTGTTTGTTAGCGTAAGAAACATCATCAGCTTTGTCG 1248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TGAATAATTCAATATGGTTAGTGTTTGTTAGCGTAAGAAACATCATCAGCTTTGTCG 1214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5