BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44010.1
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483520 jgi|Araly1|483520|fgenesh2_kg.4__2580__AT2G44010.1 974 0.0
> Ahg483520 jgi|Araly1|483520|fgenesh2_kg.4__2580__AT2G44010.1
Length=707
Score = 974 bits (527), Expect = 0.0
Identities = 654/709 (92%), Gaps = 33/709 (5%)
Strand=Plus/Plus
Query 51 TATAAAGAAAGACAAATATAAAAGAAGAATATTGGAAGGTAACTAAGCACCAAACCCAAA 110
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 TATAAAGAAAGATAAATATAAAAGAAGAATATTGGAAGGTAACTAAGCACCAAACCCAAA 87
Query 111 GTCAATAACCATTAACAAAAACCTTTTGCTTCATCTCAAAGAACCACAAAGAGCGAAATA 170
||||||||||| | ||| || | || |||||||||||| ||||||
Sbjct 88 GTCAATAACCA-T-----AAA----------CA---C-AA-AACCACAAAGAGAGAAATA 126
Query 171 AGAAAACAAAAAGAGAGT--ATCATCAATGGATGGTTTAATACCAATGGCCCTTAAGGCC 228
|||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 127 AGAAAACAAAAATAGAGTGAATCATAAATGGATGGTTTAATACCGATGGCCCTTAAGGCC 186
Query 229 GTGAAGAAGAACCTAACTCGTCGTCGTTACGAACGTCTCTCCTATTCCGCAACAACTCGT 288
||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 187 GTGAAGAAGAATCTAACTCGTCGTCGTTACGAACGTCTCTCCTCCTCCGCCACAACTCGT 246
Query 289 GAGTCTTACGACTTCGCTTCCGATATTGAAATGAACGTCGACGGTCGTCACCATCGCCGT 348
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GAGTCTTACGACTTTGTTTCCGATATTGAAATGAACGTCGACGGTCGTCACCATCGCCGT 306
Query 349 GGCTGGTCCGTTGGAGATTTCTCATCGTTATCAAGCCGGGAAACCAAAAGAAACGGTGGT 408
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 307 GGCTGGTCCGTTGGAGACTTCCCATCGTTATCAAGCCGGGAAACAAAAAGAAACGGTGGT 366
Query 409 GTAGCTCCGGAGAAGAG-TCTTACTCCGCCGCGGGAGGGTCAACTTGTAAGATTCAAGAG 467
||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 367 GTAGCTCCGGAGAAGGGAT-TTACTCCGCCGCGGGAGGGTCAACTTGTACGATTCAAGAG 425
Query 468 CCATAGATTGTTTTCTTGCATCTCAGGTCAATAATTTTATCATTTCAAGAAAATTCTC-A 526
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 426 CCATAGATTGTTTTCTTGCATCTCAGGTCAATAATTTTATCAATTCAAGAAAATTCTCAA 485
Query 527 AATACAGaaaaaaaaaaaaaaaaaTTTTTTAGGAAATTTGCATTTTTATTTCGTGTTGTG 586
|||||||||||||| ||||| ||| ||||||||||||| |||| ||||||||||||
Sbjct 486 AATACAGAAAAAAACAAAAATAAA-----TAGGAAATTTGCA-TTTTCTTTCGTGTTGTG 539
Query 587 TTTGATTTTATGTACAACGAATCATGTAGATATCGTTATTTTGTGATCTTTTGATGTATA 646
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTTGATTTTATGTACAAAGAATCATGTAGATATCGTTATTTTGTGATCTTTTGATGTATA 599
Query 647 CGTAAAGTTTGTAGTTGGGGTTTGTTGTTAAAATGTATATTTGTAAGGTCATAAACGAGA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGTAAAGTTTGTAGTTGGGGTTTGTTGTTAAAATGTATATTTGTAAGGTCATAAACGAGA 659
Query 707 AAATGAAAACTTGTATGGACCAAACTAGAAATAATGTTAATAACTCTCC 755
|| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 660 AA-TGAAAAGTTGTATGGACCAAACTAGAAATAATGTTAATAACTCTCC 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829729410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5