BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44020.1
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935321 jgi|Araly1|935321|scaffold_403309.1 2575 0.0
Ahg935099 jgi|Araly1|935099|scaffold_403087.1 145 1e-33
> Ahg935321 jgi|Araly1|935321|scaffold_403309.1
Length=1567
Score = 2575 bits (1394), Expect = 0.0
Identities = 1511/1568 (96%), Gaps = 6/1568 (0%)
Strand=Plus/Plus
Query 107 TCTTCTGGGTATCTCCAGAATGAGCTATCTTC-T-T-AGGAGGAACAAGTTCGTAGCTTT 163
|||||||||||||||||||||||||||||||| | | ||||||||||||||| |||||||
Sbjct 2 TCTTCTGGGTATCTCCAGAATGAGCTATCTTCTTCTCAGGAGGAACAAGTTCTTAGCTTT 61
Query 164 ACTCAAAAGACAGAGTCTCATCTTTCCGATTACTTCCACTGAAGCTAAAACCCTGATAAA 223
| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 62 AATCAGAAGACAGAGTCTCATCTTTCCGATTACTTTCACTGAAACTAAAACCCTGATAAA 121
Query 224 CCCAGATCCTAATATCCCTCAATTTCAAAACCCTTGTTCGATTTTCAGGATTGCTCACTA 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CCCAGATCCTAATATCCCTCAATTTCAAAACCCTTGTTCGATTTTCAGGATTGCTCACTA 181
Query 284 TGCAACCCAATCTTCAAAGTTTCCAGAGTACGAGATGCCTACAGTCACATGGGGAGTTAT 343
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 182 TGCAACTCAATCTTCAAAGTTCCCGGAGTACGAGATGCCTACAGTCACATGGGGAGTTAT 241
Query 344 ACAAGGGAAGAAAGAGAAGCTCGTGAATCGCGTCAAAATCTGCGACTATCTCAAGGGTTT 403
||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 242 ACAGGGGAAGAAAGAGAAGCTCGTGAATCGTGTCAAAATCTGCGATTATCTCAAGGGTTT 301
Query 404 GGGGATAATCACCGATGAATTGGAGAGTATTGAGCTACCTTCCACCATTGAAGTCATGTG 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GGGGATAATCACCGATGAATTGGAGAGTATTGAGCTACCTTCCACCATTGAAGTCATGTG 361
Query 464 TGAGCGTGTTGAGTTCTTACAGAAGCTAGGGTTAACGATTGACGATATAAATGAGTATCC 523
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 362 TGAGCGTGTTGAGTTCTTACAGAAGCTAGGGTTAACCATAGACGATATAAATGAGTATCC 421
Query 524 TTTGATGTTAGGTTGTAGTGTGCGTAAGAATTTGATTCCTGTCTTGGCTTACTTAGAGAA 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TTTGATGTTAGGTTGTAGTGTGCGTAAGAATTTGATTCCTGTCTTGGCTTACTTAGAGAA 481
Query 584 AATTGGAATCTCGAGATCGAAATTAGGAGAATTTGTTAAGAACTATCCTCAGGTTCTACA 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 482 AATTGGAATCTCGAGATCGAAATTAGGAGAATTTGTTAAGAACTATCCTCAGGTTCTCCA 541
Query 644 CGCAAGTGTGGTTGTTGAGCTTGCTCCTGTGGTTAAGTTTCTTAGAGGACTCGATGTGGA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 542 TGCAAGTGTGGTTGTTGAGCTTGCTCCTGTGGTTAAGTTTCTTAGAGGACTCGACGTGGA 601
Query 704 GAAGCAAGATTTGGGTTATGTAT-TGATGAAGTATCCTGAGCTGCTAGGGTTTAAGCTTG 762
||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||| |
Sbjct 602 GAAGCAAGATTTGGGGTATGT-TCTGATGAAGTATCCTGAGCTGTTAGGGTTTAAGCTCG 660
Query 763 AAGGCACGATGAGCACATCGGTTGCGTATTTGGTGAGCATTGGTGTGAGTCCTAGGGACA 822
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 AAGGCACCATGAGCACATCGGTTGCGTATTTGGTGAGCATTGGTGTGAGTCCTAGGGATA 720
Query 823 TTGGTCCAATGGTAACTCAGTATCCTTATCTTTTGGGAATGAGAGTTGGAACCATGATCA 882
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGGTCCAATGGTGACTCAGTATCCTTATCTTTTGGGAATGAGAGTTGGAACCATGATCA 780
Query 883 AGCCTTTAGTAGATTATCTAATTTCCATTGGTTTGCCAAAGAAAATTGTGGCTAGGATGC 942
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 781 AACCTTTAGTAGATTATCTAATTTCCATTGGGTTGCCGAAGAAAATTGTGGCTAGGATGC 840
Query 943 TAGAGAAACGTTCATATATAGTTGGATACAATCTCGAGGAGACTGTTAAACCAAACGTAG 1002
||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 841 TAGAGAAACGTGCATATATAGTCGGATACAATCTCGAGGAGACTGTTAAACCAAATGTAG 900
Query 1003 ATTGCTTGATTAGTTTTGGCGTCAAGAAAGAACTACTACCTTTGCTTATAGCTCAATATC 1062
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 901 ATTGTTTGATTAGTTTTGGCGTCAAGAAAGAGCTACTACCATTGCTTATAGCTCAATATC 960
Query 1063 CTCAAATTCTCGGGTTACCAGTGAAAGCCAAGATGTCTACACAACAGTACTTTTTCAGCT 1122
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 961 CTCAAATTCTCGGGTTACCGGTAAAAGCCAAGATGTCTACACAACAGTACTTTTTCAGCT 1020
Query 1123 TGAAGCTCAAGATTGATCCTGAAGGATTTGCTCGTGTGGTAGAGAAAATGCCACAGATTG 1182
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1021 TGAAGCTCAAGATTGATCCTGAAGGATTCGCTCGTGTGGTAGAGAAAATGCCACAGATCG 1080
Query 1183 TAAGTCTTAAGCAGAATGTGATAATGAAACCCATTGAGTTTCTCTTGGGCAGGGCATTTC 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TAAGTCTTAAGCAGAATGTGATAATGAAACCCATTGAGTTTCTCTTGGGCAGGGCATTTC 1140
Query 1243 AAGTTGAGGACATTGCGAAAATGGTTGTGAGATGTCCTCAGATCCTCTGTTCCCGAGTGG 1302
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1141 AAGTCGAGGACATTGCGAAAATGGTTGTGAGATGTCCTCAGATCCTATGTTCCCGAGTCG 1200
Query 1303 AACTCATGAAGAATAGTTACTACTTTTACAAGACCGAGATGGGGAGACCGATGAAAGAAC 1362
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AACTCATGAAGAATAGCTACTACTTTTACAAGACCGAGATGGGGAGACCGATGAAAGAAC 1260
Query 1363 TCGTGGAGTACCCTGAGTACTTTACTTATAGCTTGGAGTCAAGAATCAAACCGAGGTACC 1422
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1261 TCGTGGAGTACCCTGAGTATTTTACTTATAGCTTGGAGTCAAGAATCAAACCAAGGTACC 1320
Query 1423 AAAAACTACAGAGCAAAGGAATCAGGAGTTCATTGAACTGGTTCCTCAATTGCAGTGACC 1482
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1321 AAAAACTACAGAGCAAAGGAATTAGGAGTTCATTGAACTGGTTCCTCAATTGCAGCGACC 1380
Query 1483 AAAGATTCGAGGAACGATTACAAGGTAACTTCATTGATCCAGATACTGAAGGTCCAACGT 1542
|||||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||
Sbjct 1381 AAAGATTCGAGGAACGGTTACAAGGTAACTTTATCGATCCAGATACTGAAGGTCCAATGT 1440
Query 1543 TTGACATGGGTGGGAAGTTAGAAATGCCTGGTGGCGAGATAGTGACTGATGAGGAAGAAG 1602
| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1441 TCGACATGGGCGGGAAGTTAGAAATGCCTGGTGGCGAGATTGTGTCTGATGAGGAAGAAG 1500
Query 1603 ATGAGAGTGATGATGAAGTTCTCTACAGACGCACTCTTACTTTGTAGAATAATCAAAAGT 1662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 ATGAGAGTGATGATGAAGTTCTCTACAGACGCACTCTTACTTTGTAGAATAATCAAAAGT 1560
Query 1663 CTTTTAGC 1670
|||| |||
Sbjct 1561 CTTT-AGC 1567
> Ahg935099 jgi|Araly1|935099|scaffold_403087.1
Length=399
Score = 145 bits (78), Expect = 1e-33
Identities = 94/102 (92%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1092 AAGATGTCTACACAACAGTACTTTTTCAGCTTGAAGCTCAAGATTGATCCTGAAGGATTT 1151
||||||||||||||||||||||| ||| | ||||| ||||||||||||| ||||||||||
Sbjct 245 AAGATGTCTACACAACAGTACTTATTCTGTTTGAACCTCAAGATTGATCTTGAAGGATTT 304
Query 1152 GCTCGTGTGGTAGAGAAAATGCCACAGATTGTAAGTCTTAAG 1193
|||||||||||||||||||||||||| |||||||| || |||
Sbjct 305 GCTCGTGTGGTAGAGAAAATGCCACAAATTGTAAGCCTGAAG 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68600531245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5