BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G44030.1

Length=1143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg902495 jgi|Araly1|902495|Al_scaffold_0004_3145                    106    4e-22


> Ahg902495 jgi|Araly1|902495|Al_scaffold_0004_3145
Length=378

 Score =  106 bits (57),  Expect = 4e-22
 Identities = 67/72 (93%), Gaps = 0/72 (0%)
 Strand=Plus/Plus

Query  19   ATGAGGTCATCATCATCAGAGTCGTCTCCCAAGTCGTTTCTGTCGTTACCGTACGACGTT  78
            ||||||  ||||||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct  55   ATGAGGAAATCATCATCAGAGTCGTCTCCCAAGTCGTTTTTGTCTTTACCCTACGACGTT  114

Query  79   GTTTTCAACTGT  90
            ||||||||||||
Sbjct  115  GTTTTCAACTGT  126



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42621421206


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5