BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44040.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483522 jgi|Araly1|483522|fgenesh2_kg.4__2582__AT2G44040.1 2211 0.0
Ahg486453 jgi|Araly1|486453|fgenesh2_kg.5__2445__AT3G59890.1 1027 0.0
Ahg343774 jgi|Araly1|343774|fgenesh1_pg.C_scaffold_4000116 156 5e-37
> Ahg483522 jgi|Araly1|483522|fgenesh2_kg.4__2582__AT2G44040.1
Length=1367
Score = 2211 bits (1197), Expect = 0.0
Identities = 1315/1371 (96%), Gaps = 12/1371 (1%)
Strand=Plus/Plus
Query 4 CTCTCACCGGCC-GGAAATTTTCAGACAAAAGTGAAAGATTTAAACTTTTGACTCCGT-- 60
|||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 1 CTCTCACCGGCCGGGAAA-TTTCAGACAAAAGTGAAAGATTTGAACTTTTG--TCCGTAG 57
Query 61 -CGTAACAAAGAACAAAACTTCCGTATCCT-GGAG-AGTAAATTCCTTTATGGCTACGAA 117
|||||||||||||||||||| ||| |||| |||| || ||||||||| |||||||||||
Sbjct 58 ACGTAACAAAGAACAAAACTTTCGTCTCCTGGGAGAAG-AAATTCCTTAATGGCTACGAA 116
Query 118 TGGGTTAATGGCGTCGTCCAGTGTGTTTCTTCATCGCCCGCGTATCGCATTTGCTTCTAG 177
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 117 TGGGTTAATGGCGTCTTCCAGTGTGTTTCTTCATCGCCCGCGAATTGCATTTGCTTCTAG 176
Query 178 AACGAATCAGACTGTAGGAAAATACGGTAAAGGCCGTGTTAGTTTCATGGGCATTGGGAC 237
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AACGAATCAGACTGCAGGAAAATACGGTAAAGGCCGTGTTAGTTTCATGGGCATTGGGAC 236
Query 238 ACGTCGTCTTCCGGTGGTTTTATCCATGACGGCGATGGCGGATTCCGGTGAGGAGGCCGT 297
|||||||||||||||| ||||||| ||||| |||| |||||| |||||||||||||| ||
Sbjct 237 ACGTCGTCTTCCGGTGATTTTATCAATGACAGCGACGGCGGAGTCCGGTGAGGAGGCTGT 296
Query 298 GAAATCTGTTTTGCCTGGAAATGGCATATCCATCATGGTGAATGGATGTAGTGGCAAAAT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAAATCTGTTTTGCCTGGAAATGGCATATCCATCATGGTGAATGGATGTAGTGGCAAAAT 356
Query 358 GGGGAAAGCTGTAATTAAAGCAGCAGACTCTGCAGGAGTAAATATTGTTCCCATATCGTT 417
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 357 GGGGAAAGCTGTAATCAAAGCAGCAGACTCTGCAGGAGTAAATATTGTTCCCATATCATT 416
Query 418 TGGATCTGCTGGTGAGGATGGTCAGAGAGTTGAGGTCTGTGGAAAGGAGATTACTGTGCA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGGATCTGCTGGTGAGGATGGTCAGAGAGTTGAGGTCTGTGGAAAGGAGATTACTGTGCA 476
Query 478 CGGTCCAACTGAAAGAGAAAAGGTTCTTTCTTCGGTGTTTGAGAAGCACCCGGAGCTAAT 537
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CGGTCCTACTGAAAGAGAAAAGGTTCTTTCTTCGGTGTTTGAGAAGCACCCGGAGCTAAT 536
Query 538 TGTTGTCGACTACACAATTCCCTCTGCAGTAAATGATAATGCGGAGCTGTATAGCAAAGT 597
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGTTGTGGACTACACAATTCCTTCTGCAGTAAATGATAATGCGGAGCTGTATAGCAAAGT 596
Query 598 AGGTGTTCCTTTCGTCATGGGAACAACTGGTGGAGATAGGAACAAATTGTATGAAACTGT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGGTGTTCCTTTCGTCATGGGAACAACTGGTGGAGATAGGAACAAATTGTATGAAACTGT 656
Query 658 TGAGGAAGCAAAGATTTATGCTGTGATTTCTCCACAGATGGGTAAACAGGTTGTAGCATT 717
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 657 TGAGGAAGCAAAGATTTATGCTGTGATTTCCCCACAGATGGGTAAACAGGTTGTAGCATT 716
Query 718 TCTTGCGGCCATGGAGATCATGGCTGAGCAGTTTCCGGGAGCCTTTTCTGGTTATTCCTT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 TCTTGCGGCCATGGAGATCATGGCTGAGCAGTTTCCGGGAGCCTTTTCTGGTTATTCATT 776
Query 778 GGATGTGATGGAGTCTCATCAAGCTAGCAAATTGGATGCATCCGGAACAGCAAAAGCTGT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GGATGTGATGGAGTCTCATCAAGCTAGCAAATTGGATGCATCCGGAACAGCAAAAGCTGT 836
Query 838 TATTTCTTGCTTCCAGGAATTGGGTGTGTCTTACGACATGGATCAGATACAATTGATTCG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TATTTCTTGCTTCCAGGAATTGGGTGTGTCTTACGACATGGATCAGATACAATTGATTCG 896
Query 898 GGATCCAAAACAGCAAGTGGAGATGGTGGGTGTACCTGAGGAGCATATCTCTGGTCACGC 957
||||||||||||||||||||||||||||||||| || || |||||||||||||| || ||
Sbjct 897 GGATCCAAAACAGCAAGTGGAGATGGTGGGTGTTCCCGAAGAGCATATCTCTGGCCATGC 956
Query 958 TTTCCATCTTTATCACTTGACATCACCCGATGAAACTGTCTCCTTCGAGTTCCAGCACAA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 957 TTTCCATCTTTATCACTTGACATCACCCGATGAAACTGTCTCCTTCGAGTTCCAGCATAA 1016
Query 1018 TGTCTGCGGCCGATCAATTTATGCTGAGGGTACTGTTGATGCCGTGCTCTTCCTCGCCAA 1077
|||||||||| ||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1017 TGTCTGCGGCAGATCAATATACGCCGAGGGTACTGTTGATGCCGTGCTCTTCCTCGCCAA 1076
Query 1078 AAAGATTCGATTGAAAGCAGATCAGCGAATCTACAACATGATCGATGTCTTGAGAGAGGG 1137
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1077 AAAGATTCGATTGAAAGCAGATCAGCGAATCTACAACATGATCGATGTTTTGAGAGAGGG 1136
Query 1138 AAATATGCGTTGAGCTTTCGAGTTTTGCCAGTGCATTGACCAAATGGTGGTTGTAGAAGA 1197
||| ||||||| ||||| ||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 1137 AAACATGCGTTAAGCTTCCGAGTTTTGTCAGTGCATTGACCAAATGGTGGTTCTAGAAAA 1196
Query 1198 -GCTGAGATTAGATTTACCAAATCATCAGCTGTGAAAATTAGATGTTTGGTTTCCCACTT 1256
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1197 AGCTGAGATTAGATTTACCAAATCATCAGCTGTGAAGATTAGATGTTTGGTTTCCCACTT 1256
Query 1257 CTTCTGCCTTGAGCACAGGCTTTTGAAATTCCTTGGTATATACAAGAACTTGCCATTGTA 1316
|||||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||||||
Sbjct 1257 CTTCTGCCTTTAGCACAGGCTTTTAAAACTCCTTGGTATATACAGGAACTTGCCATTGTA 1316
Query 1317 TTGTTCATGTTTTGACCTCTTTACCTCAA-TGTTATTCTCCTTTCTGGATC 1366
|||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1317 TTGTTCATGTTTTGACCTCTTTACCTTAAATGTTATTCTCCTTTCTGGATC 1367
> Ahg486453 jgi|Araly1|486453|fgenesh2_kg.5__2445__AT3G59890.1
Length=1398
Score = 1027 bits (556), Expect = 0.0
Identities = 825/954 (86%), Gaps = 21/954 (2%)
Strand=Plus/Plus
Query 206 AAAGGCCGTGTTAGTTTCATGGGCATTGGGACACGTCGTCTTC--CGGTGGTTTTATCCA 263
|||||||||||| |||||||||||| || || || || | ||| |||||||||| | ||
Sbjct 248 AAAGGCCGTGTTGGTTTCATGGGCAATGTGAAAC-TC-TGTTCGACGGTGGTTTTGT-CA 304
Query 264 TGACGGCGATGGCGGATTCCGGT-GAGGAGGCCGTG-AAATCTGTTTTGCCTGGAAATGG 321
| ||| | | |||| | | ||||| |||| | || || || |||||| || ||
Sbjct 305 --ATGGCAAAGTCGGA-GACTTTAGAGGAAGCCG-GCAAGTCCGTAGCGCCTGGTAACGG 360
Query 322 CATATCCATCATGGTGAATGGATGTAGTGGCAAAATGGGGAAAGCTGTAATTAAAGCAGC 381
|||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 361 CATATCGATCATGGTGAATGGATGCAGTGGCAAAATGGGGAAAGCTGTCATCAAAGCGGC 420
Query 382 AGACTCTGCAGGAGTAAATATTGTTCCCATATCGTTTGGATCTGCTGGTGAGGATGGTCA 441
||| ||||| ||||| ||||||||||| | ||| |||||||||| || |||| ||| ||
Sbjct 421 AGATTCTGCTGGAGTTAATATTGTTCCTACATCATTTGGATCTGTTGAAGAGGCTGGCCA 480
Query 442 GAGAGTTGAGGTCTGTGGAAAGGAGATTAC-TGTGCACGGTCCAACTGAAAGAGAAAAGG 500
||||||||||||||||||||||||||| | ||| || ||||| || || ||||||||||
Sbjct 481 AAGAGTTGAGGTCTGTGGAAAGGAGATT-CTTGTTCATGGTCCTACCGAGAGAGAAAAGG 539
Query 501 TTCTTTCTTCGGTGTTTGAGAAGCACCCGGAGCTAATTGTTGTCGACTACACAATTCCCT 560
|||| |||||||||||||||||| | || || ||||||||||| ||||||||||||||||
Sbjct 540 TTCTATCTTCGGTGTTTGAGAAGTATCCTGAACTAATTGTTGTGGACTACACAATTCCCT 599
Query 561 CTGCAGTAAATGATAATGCGGAGCTGTATAGCAAAGTAGGTGTT-CCTTTCGTCATGGGA 619
||||||||||||||||||| ||||||||| |||||||||| ||| ||||| |||||||||
Sbjct 600 CTGCAGTAAATGATAATGCAGAGCTGTATGGCAAAGTAGGAGTTCCCTTT-GTCATGGGA 658
Query 620 ACAACTGGTGGAGATAGGAACAA-ATTGTATGAAACTGTTGAGGAAGCAAAGATTTATGC 678
|||||||| ||||| ||| |||| |||||| ||||||| |||||| |||||||||||||
Sbjct 659 ACAACTGGAGGAGACAGG-ACAAGGTTGTATAAAACTGTAGAGGAATCAAAGATTTATGC 717
Query 679 TGTGATTTCTCCACAGATGGGTAAACAGGTTGTAGCATTTCTTGCGGCCATGGAGATCAT 738
|||||| || ||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 718 TGTGATCTCCCCACAGATGGGTAAACAGGTTGTTGCGTTTCTTGCAGCCATGGAGATCAT 777
Query 739 GGCTGAGCAGTTTCCGGGAGCCTTTTCTGGTTATTCCTTGGATGTGATGGAGTCTCATCA 798
| ||||||||||||| || || ||| ||||||||||||| || |||||||||||||||||
Sbjct 778 GTCTGAGCAGTTTCCTGGTGCATTTGCTGGTTATTCCTTAGAGGTGATGGAGTCTCATCA 837
Query 799 AGCTAGCAAATTGGATGCATCCGGAACAGCAAAAGCTGTTATTTCTTGCTTCCAGGAATT 858
||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||| ||||
Sbjct 838 AGCTAGCAAATTGGATGCATCTGGAACTGCAAAAGCTGTAATTTCTTGCTTTCAGAAATT 897
Query 859 GGGTGTGTCTTACGACATGGATCAGATACAATTGATTCGGGATCCAAAACAGCA-AGTGG 917
||| ||||||||||||||||| ||||||||||| ||||| ||||| || ||||| | ||
Sbjct 898 GGGGGTGTCTTACGACATGGACCAGATACAATTAATTCGAGATCCTAAGCAGCAGATTG- 956
Query 918 AGATGGTGGGTGTACCTGAGGAGCATATCTCTGGTCACGCTTTCCATCTTTATCACTTGA 977
|| |||||||||| || ||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 957 AGGTGGTGGGTGTTCCGGAGGAGCATGTCTCGGGTCATGCTTTCCATCTTTATCACTTGA 1016
Query 978 CATCACCCGATGAAACTGTCTCCTTCGAGTTCCAGCACAATGTCTGCGGCCGATCAATTT 1037
||||||| ||| ||||||| ||||| ||||||||||||||||| ||||| ||||||| |
Sbjct 1017 CATCACCAGATAAAACTGTGTCCTTTGAGTTCCAGCACAATGTTTGCGGAAGATCAATAT 1076
Query 1038 ATGCTGAGGGTACTGTTGATGCCGTGCTCTTCCTCGCCAAAAAGATTCGAT-TGAAAGCA 1096
|||||||||||||||||||||| ||||| ||||| ||||||||||| || | | ||||||
Sbjct 1077 ATGCTGAGGGTACTGTTGATGCAGTGCTTTTCCTTGCCAAAAAGATCCGGTCT-AAAGCA 1135
Query 1097 GATCAGCGAATCTACAACATGATCGATGTCTTGAGAGAGGGAAATATGCGTTGA 1150
|| |||| ||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 1136 GAGAAGCGGATCTATAACATGATTGATGTCTTGAGAGAGGGAAACATGCGTTGA 1189
> Ahg343774 jgi|Araly1|343774|fgenesh1_pg.C_scaffold_4000116
Length=675
Score = 156 bits (84), Expect = 5e-37
Identities = 116/131 (89%), Gaps = 3/131 (2%)
Strand=Plus/Plus
Query 156 CGCGTATCGCATTTGCTTCTAGAACGAATCAGACTGTAGGAAAATA-CGGTAAAGGCCGT 214
|||||||||||||||||||||||||||||||||||| |||||| | |||| |||| |||
Sbjct 29 CGCGTATCGCATTTGCTTCTAGAACGAATCAGACTGCAGGAAA-TGGCGGTGAAGGTCGT 87
Query 215 GTTAGTTTCATGGGCATTGGGACACGTCGTCTT-CCGGTGGTTTTATCCATGACGGCGAT 273
||||| ||| |||| ||||||||||||||||| |||||||||||||| |||| |||||
Sbjct 88 GTTAGGTTCCCGGGCGTTGGGACACGTCGTCTTTCCGGTGGTTTTATCTATGAAGGCGAC 147
Query 274 GGCGGATTCCG 284
||| |||||||
Sbjct 148 GGCAGATTCCG 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5