BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44050.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935323 jgi|Araly1|935323|scaffold_403311.1 1229 0.0
> Ahg935323 jgi|Araly1|935323|scaffold_403311.1
Length=724
Score = 1229 bits (665), Expect = 0.0
Identities = 704/723 (97%), Gaps = 1/723 (0%)
Strand=Plus/Plus
Query 35 AAACTCCGACGAACGAAAAATGAAGTCATTAGCTTCGCCGCCGTGTCTCCGCCTGATACC 94
||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AAA-TCCGACGAGCGAAACATGAAGTCATTAGCTTCGCCGCCGTGTCTCCGCCTGATACC 61
Query 95 GACGGCACACCGTCAGCTCAATTCGCGTCAATCTTCCTCCGCCTGTTATATACACGGTGG 154
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 62 GACGGCCCACCGTCAGCTCAATTCGCGTCAATCTTCCTCAGCCTGTTATATTCACGGTGG 121
Query 155 CTCTTCTGTGAACAAATCCAATAATCTCTCATTCTCCTCATCCACATCCGGATTTGCGTC 214
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 122 CTCTTCTGTGAACAAATCCAATAACCTCTCATTCTCCTCATCCACATCCGGATTTGCGTC 181
Query 215 ACCACTAGCTGTAGAGAAGGAATTACGCTCTTCATTCGTACAGACGGCTGCTGTTCGCCA 274
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ACCACTCGCTGTAGAGAAGGAATTACGCTCTTCATTCGTACAGACGGCTGCTGTTCGCCA 241
Query 275 TGTTACGGGGTCTCTTATCAGAGGCGAAGGTCTTAGATTCGCCATCGTGGTAGCTCGTTT 334
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 242 TGTTACTGGGTCTCTTATCAGAGGCGAAGGTCTTAGATTCGCCATCGTTGTAGCTCGTTT 301
Query 335 CAATGAGGTTGTGACTAAGTTGCTTTTGGAAGGAGCGATTGAGACTTTCAAGAAGTATTC 394
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 302 CAATGAGGTTGTGACTAAGTTGCTATTGGAAGGAGCGATTGAGACTTTCAAGAAGTATTC 361
Query 395 AGTCAGAGAAGAAGACATTGAAGTTATTTGGGTTCCTGGCAGCTTTGAAATTGGTGTTGT 454
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 362 AGTCAGAGAAGAAGACATTGAAGTTATATGGGTTCCTGGCAGCTTTGAGATTGGTGTTGT 421
Query 455 TGCACAAAATCTTGGGAAATCGGGAAAATTTCATGCTGTTTTATGTATCGGCGCTGTGAT 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TGCACAAAATCTTGGGAAATCGGGAAAATTTCATGCTGTTTTATGTATCGGCGCTGTGAT 481
Query 515 AAGAGGAGATACCACACATTATGATGCTGTTGCCAACTCTGCTGCGTCTGGAGTACTTTC 574
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AAGAGGAGATACCACGCATTATGATGCTGTTGCCAACTCTGCTGCGTCTGGAGTACTTTC 541
Query 575 TGCTAGCATAAATTCAGGCGTTCCATGCATATTTGGTGTACTGACTTGCGAGGACATGGA 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGCTAGCATAAATTCAGGCGTTCCATGCATATTTGGTGTACTGACTTGCGAGGACATGGA 601
Query 635 TCAGGCTCTGAATCGATCTGGTGGCAAAGCCGGCAATAAGGGAGCTGAAACTGCTTTGAC 694
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TCAGGCTTTAAATCGATCTGGTGGCAAAGCCGGCAATAAGGGAGCTGAAACTGCTTTGAC 661
Query 695 GGCGCTCGAAATGGCGTCGTTGTTTGAGCACCACCTGAAATAGCTCGGCTCGTTCGATGG 754
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 662 GGCGCTCGAAATGGCGTCGTTGTTTGAGCACCACCTGAAATAGCTCTGCTGGTTCCATGG 721
Query 755 ATG 757
|||
Sbjct 722 ATG 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5