BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44060.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902422 jgi|Araly1|902422|Al_scaffold_0004_3072 1495 0.0
> Ahg902422 jgi|Araly1|902422|Al_scaffold_0004_3072
Length=975
Score = 1495 bits (809), Expect = 0.0
Identities = 919/972 (95%), Gaps = 8/972 (1%)
Strand=Plus/Plus
Query 82 ATGTCGACATCTGAGGATAAACCGGAAATCATCAGTAGAGTAGTTCATCAGGAGGGTGAC 141
|||||||| |||||||||||||| ||| || ||||| || |||||||||||||||||||
Sbjct 1 ATGTCGACTTCTGAGGATAAACCAGAACTCCTCAGT--AG-AGTTCATCAGGAGGGTGAC 57
Query 142 GTGGAAATCGTCGATAGAAGTCAGAAGGATAAGGACGAGGAAAAAGAAGAAGGGAAAGGT 201
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 58 GTGGAAATTGTCGATAGAAGTCAGAAGGATAAGGACGAGG---AAGAAGAAGGGAAAGGT 114
Query 202 GGATTCCTCGATAAGGTGAAAGATTTCATTCATGACATTGGTGAGAAACTCGAGGGAACC 261
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 115 GGATTCCTCGATAAGGTGAAAGATTTCATTCATGACATTGGTGAGAAAATCGAAGGAACC 174
Query 262 ATTGGCTTTGGGAAGCCAACTGCTGATGTCTCTGCGATTCATATCCCTAAGATCAATCTT 321
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 175 ATTGGGTTTGGGAAGCCAACTGCTGATGTCTCTGCGATTCATATCCCCAAGATCAATCTC 234
Query 322 GAGAGGGCAGATATTGTTGTGGATGTGCTTGTCAAGAACCCGAATCCAGTTCCTATCCCT 381
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 235 GAGAGGGTAGATATTGTTGTGGATGTGCTTGTGAAGAACCCGAATCCAGTTCCTATCCCT 294
Query 382 CTCATCGATGTCAACTACCTGGTCGAGAGCGATGGGAGGAAACTGGTTTCTGGTTTGATC 441
|| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 295 CTGATCGATGTTAACTATCTGGTCGAGAGCGATGGGAGGAAACTGGTTTCGGGATTGATC 354
Query 442 CCGGATGCTGGAACACTCAAGGCTCATGGAGAAGAAACTGTGAAGATACCATTGACGTTG 501
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 355 CCGGATGCTGGAACCCTCAAGGCACATGGAGAAGAAACTGTGAAGATACCATTGACTTTG 414
Query 502 ATCTATGATGACATCAAGAGCACTTACAACGATATCAACCCCGGGATGATCATACCTTAC 561
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ATCTATGATGACATCAATAGCACTTACAACGATATCAACCCCGGGATGATCATACCTTAC 474
Query 562 AGAATCAAGGTTGATCTGATTGTGGATGTGCCAGTATTGGGAAGACTGACATTGCCGCTG 621
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AGGATCAAGGTTGATCTGATTGTGGATGTGCCAGTATTGGGAAGACTGACATTGCCGCTG 534
Query 622 GAGAAATGTGGAGAGATCCCAATTCCAAAGAAACCTGATGTTGATATCGAGAAGATTAAG 681
|||||| ||||||||||||| |||||||||||||| || ||||||||||||| |||||||
Sbjct 535 GAGAAACGTGGAGAGATCCCGATTCCAAAGAAACCCGACGTTGATATCGAGACGATTAAG 594
Query 682 TTCCAGAAGTTCTCTTTGGAGGAAACCGTGGCGATTCTCCATGTGAGGCTTCAGAACATG 741
||||||||||| |||||||| |||||||||||||| ||||| ||||||||| ||||||||
Sbjct 595 TTCCAGAAGTTTTCTTTGGAAGAAACCGTGGCGATCCTCCACGTGAGGCTTGAGAACATG 654
Query 742 AATGA-TTTCGACTTGGGGCTCAATGACTTGGACTGTGAAGTTTGGCTGTGTGATGTAAG 800
||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 655 AATGACTTT-GACTTGGGGCTCAATGACTTGGACTGTGAAGTTTGGTTGTGTGATGTAAG 713
Query 801 CATTGGGAAAGCAGAGATCGCGGACTCGATCAAGCTTGACAAAAACGGAAGCGGATTGAT 860
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 714 CATTGGGAAAGCAGAGATATCGGACTCGATCAAGCTTGACAAAAACGGAAGCGGCTTGAT 773
Query 861 TAATGTGCCGATGACATTCCGACCAAAGGACTTTGGTTCTGCGCTTTGGGATATGATTCG 920
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 774 TAATGTGCCAATGACATTCCGACCAAAGGACTTTGGTTCCGCGCTTTGGGATATGATCCG 833
Query 921 TGGTAAAGGAACAGGGTACACAATCAAAGGTAATATTGATGTTGATACACCATTTGGAGC 980
||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 834 TGGGAAAGGAACTGGGTACACTATCAAAGGTAATGTTGATGTTGATACACCATTTGGAGC 893
Query 981 TATGAAGCTTCCTATTATCAAGGAAGGTGGAGAGACCCGTCTGAAGAAGGAAGATGATGA 1040
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 894 TATGAAGCTTCCTATTATCAAGGAAGGTGGATCGACCCGTCTGAAGAAGGAAGATGATGA 953
Query 1041 TGACGACGATGA 1052
||||||||||||
Sbjct 954 TGACGACGATGA 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5