BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44065.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483524 jgi|Araly1|483524|fgenesh2_kg.4__2584__AT2G44065.1 1210 0.0
> Ahg483524 jgi|Araly1|483524|fgenesh2_kg.4__2584__AT2G44065.1
Length=742
Score = 1210 bits (655), Expect = 0.0
Identities = 717/746 (96%), Gaps = 7/746 (1%)
Strand=Plus/Plus
Query 147 CCATGTCAGGTCTTGTGGCGTTATGCAGAGCTCGAGCTTCTGCTTCGTCTTCTTTATTCA 206
||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1 CCATGTCAGCTCTTGTGGCGTTATGCAGAGCTCGAGCTACTGCTTCGTTTTCTTTATTCA 60
Query 207 ACAGCGTTATTCGTCCAGCATTTCGCAATTTCTCTACAGGTTTTGCTGATACACAGAACA 266
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 ACAGCGTTATTCGTCCTGCATTTCGCAATTTCTCTACAGGTTTTGCTGATGCACAGAACA 120
Query 267 AATCATTGGTAGCACAAATGAAAGAAGAGATGCTCCACATGGACATCAACTCAATGATAG 326
|||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AATCATTGGTGGCGCAAATGAAAGAAGAGATGCTCCACATGGACATCAACTCAATGGTAG 180
Query 327 GAAGTTCCATGCCACTAGGTATGATGCGTATCGGAACAATCATCCACAACATCGAGATGA 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAGTTCCATGCCACTAGGTATGATGCGTATCGGAACAATCATCCACAACATCGAGATGA 240
Query 387 ACCCAGGGCAAGGCGCAAAGATGGTCCGAGCTGCAGGAACCAACGCCAAGATCCTAAAGG 446
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 ACCCAGGGCAAGGCGCGAAGATGGTCCGAGCTGCAGGAACCAACGCCAAGATCTTAAAGG 300
Query 447 AGCCTGCTAAAGGGAAATGCTTGATAAAGCTTCCGTCAGGGGACACCAAGTGGATCAATG 506
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 301 AGCCTGCTTCAGGGAAATGCTTGATAAAGCTTCCGTCAGGGAACACCAAGTGGATCAACG 360
Query 507 CCAAATGTCGTGCTACGATTGGCACAGTGTCGAACCCGTCTCATGGAACGAAGAAGCTAT 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCAAATGTCGTGCTACGATTGGCACAGTGTCGAACCCGTCTCATGGAACGAAGAAGCTAT 420
Query 567 ATAAAGCAGGACAGAGTAGGTGGTTAGGGATAAGGCCCAAAGTTAGAGGAGTGGCGATGA 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATAAAGCAGGACAGAGTAGGTGGTTAGGGATAAGGCCCAAAGTTAGAGGAGTGGCGATGA 480
Query 627 ATCCGTGTGATCATCCACACGGTGGAGGTGAAGGAAAAAGCAAAAGTAGTGGAAGCAGAG 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCCGTGTGATCATCCACACGGTGGAGGTGAAGGAAAAAGCAAAAGTAGTGGAAGCAGAG 540
Query 687 GAAGGACATCGGTTAGTCCGTGGGGAAAACCGTGTAAAGGCGGTTACAAATCAGCTAGTG 746
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 GAAGGACATCGGTTAGTCCGTGGGGGAAACCGTGTAAAGGCGGTTACAAATCAGCTAGTG 600
Query 747 TCAAGAAGAAGAAGAAGCGTTTGGCAGAAGCAGCAGCCAAAATGTGATATGGGTGAACAA 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCAAGAAGAAGAAGAAGCGTTTGGCAGAAGCAGCAGCCAAAATGTGATATGGGTGAACAA 660
Query 807 GTTTCGATTTTCTTC---AAACGTTTCTTTCTTTTAAAAAGCCTCCAATGTTATTTGGTT 863
||| | ||||||||| ||| | |||||||||| |||||||||| || ||| || | |
Sbjct 661 GTTACCATTTTCTTCTTCAAATGCTTCTTTCTTTAAAAAAGCCTC-AAGGTT-TT-G-TG 716
Query 864 ACGTTATTGAATCTGttttttgagag 889
||||||||||||||||||||||||||
Sbjct 717 ACGTTATTGAATCTGTTTTTTGAGAG 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5