BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44080.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483527 jgi|Araly1|483527|fgenesh2_kg.4__2587__AT2G44080.1 745 0.0
> Ahg483527 jgi|Araly1|483527|fgenesh2_kg.4__2587__AT2G44080.1
Length=780
Score = 745 bits (403), Expect = 0.0
Identities = 543/604 (90%), Gaps = 35/604 (6%)
Strand=Plus/Plus
Query 313 ATTTCATCGTCAGGGTTCTTCAACCAAACTACATTTACagaagaagaagaagaagaaAAG 372
|||||||| |||||||||||||||||| ||||||| || |||||||| | || |||||
Sbjct 203 ATTTCATCATCAGGGTTCTTCAACCAAGCTACATTGAC---AGAAGAAG-A-AA-AAAAG 256
Query 373 TTCGTTACTTTTTATGCGTTTGGAT-AAACAAACTCAAGTTTCTTCTTCATACATCGATC 431
|||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 257 TTCGTTGCTTTTTATGCGTTTGGATAAAACAAACTCAAG--T-TTCTTCATACATCGATC 313
Query 432 TGATTTTCCAGATCAAACTTC--G---A-AAAGAGAAAAAGCCTTC-TTTAAATGATTCG 484
|||||||||||||| ||| || | | ||| | ||||| | ||| |||||||||||||
Sbjct 314 TGATTTTCCAGATCGAACCTCGAGAAAATAAAAAAAAAAAACTTTCTTTTAAATGATTCG 373
Query 485 TGAGTTCTCCAGTCTACAAAACGACATCATAAACATTCAAGAACATTATTCTCTCAACAA 544
||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 374 TGAAATCTCCAGTCTACAAAACGACATCATAAACATTCAAGAACATTGTTCTCT---CAA 430
Query 545 CAACATGGACGTGAGAGGAGATCATAACCGGAAAAACACGAGTTTTCGTGGTTCAGCTCC 604
||||| || | ||||||||||||||| || ||||||||| ||||||||
Sbjct 431 CAACA---AC----------A--ATAACCGGAAAAACATGACTTTTCGTGGGTCAGCTCC 475
Query 605 AGCTCCGATTATGGGGAAGCAAGAATTGTTTCGGACATTGTCGTCGCAGAACAGTCCAAG 664
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 476 AGCTCCGATTGTTGGGAAGCAAGAGTTGTTTCGGACATTGTCGTCGCAGAACAGTCCAAG 535
Query 665 GAGGCTAATATCAGCGAGTTACTTCAGTTTAGAATCAATGGTTGTGCTTGTTGGTCTCAC 724
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 536 GAGGCTAATATCAGCGAGTTACTTCAGTTTAGAATCAATGGTTTTGCTTGTTGGTCTCAC 595
Query 725 AGCATCTCTCTTGATCTTACCGTTGATTCTTCCACCATTGCCTCCTCCTCCTTTTATGCT 784
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 596 AGCATCTCTCTTGATCTTACCGTTGATTCTTCCGCCATTGCCTCCTCCTCCCTTTATGCT 655
Query 785 GCTTTTGATTCCTATTGGGATTATGGTTTTGCTTATGGTTCTTGCTTTCATGCCTTCTTC 844
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 656 TCTTTTGATTCCTATTGGGATTATGGTTTTGCTTATGGTTCTTGCGTTCATGCCTTCTTC 715
Query 845 TAATTCCAAACATGTTTCTTCTTCTTCCACTTTTATGTAATAAACGTTTCTTTAATTGAA 904
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 716 TAATTCCAAACATGTTACTTCTTGTTCCACTTTTATGTAATAAACGTTTCTTTAATTGAA 775
Query 905 GAAA 908
||||
Sbjct 776 GAAA 779
Score = 104 bits (56), Expect = 1e-21
Identities = 60/62 (97%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 57 GTTTTCTTACCAAAAGAAACTTTCTTCGTCTTCCTCTGTATTTAAGCTTTAACACCCTGT 116
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 22 GTTTTCTTACAAAAAGAAACTTTCTTCGTCTTCCTCTGTATTTAAGCTTTAACACCCAGT 81
Query 117 TT 118
||
Sbjct 82 TT 83
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5