BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44110.2
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483530 jgi|Araly1|483530|fgenesh2_kg.4__2590__AT2G44100.1 311 1e-83
Ahg952485 jgi|Araly1|952485|scaffold_78800001.1 215 9e-55
> Ahg483530 jgi|Araly1|483530|fgenesh2_kg.4__2590__AT2G44100.1
Length=2541
Score = 311 bits (168), Expect = 1e-83
Identities = 194/207 (94%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 938 CTTTTACTTGCCGTGGGGACGAAGTTAGAGCATATCATCACAGATTTGGCTCATGAAGTT 997
||||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 2391 CTTTTGCTTGCCGTGGGGACGAAGTTGGAGCATATTATTACAGATTTGGCTCATGAAGTT 2332
Query 998 GCAGAGAAACACATTGCTGTGGAAGGAGATTTGGTTGTCCGACCATCAGATGATTTGTTC 1057
|||||||||||| |||||||||||||||||||||| || ||||||||||||||| | |||
Sbjct 2331 GCAGAGAAACACGTTGCTGTGGAAGGAGATTTGGTAGTACGACCATCAGATGATCTATTC 2272
Query 1058 TGGTTTCAAAGTCCCCGGCTAGTTCTCTTCTTGATCCATTTCATTCTTTTCCAAAACTCC 1117
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 2271 TGGTTTCAAAGTCCCCGGCTAGTTCTCATCTTGATCCATTTCATTCTCTTCCAAAACTCC 2212
Query 1118 TTCGAAATCGCCTACTTCTTCTTTATC 1144
|| ||||| ||||||||||||||||||
Sbjct 2211 TTTGAAATTGCCTACTTCTTCTTTATC 2185
Score = 222 bits (120), Expect = 6e-57
Identities = 174/200 (87%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 1275 AGATGGGAAGTTCATTCAAAGGTGCAATATTCAACGAGCAGACACAGGAACATCTTGTTG 1334
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 1795 AGATGGGAAGTTCATTCAAAGGTGCAATATTCAACGAGCAGACACAGCAACAGCTTGTCG 1736
Query 1335 GATGGGCAAAAATGGCTAAAAGGGGAGTGAAGAAAGGCG-CAACACAAGTAGGTACCAGT 1393
| ||||||||||||||||||| ||||||||||||||| | |||| || | ||||||||||
Sbjct 1735 GGTGGGCAAAAATGGCTAAAAAGGGAGTGAAGAAAGG-GACAACTCACGCAGGTACCAGT 1677
Query 1394 CATGATGCTACTAGTCCAA-GACCGTCTATTCAGTTGAACTCCTTGCTAGGAAAAGGCTC 1452
|||| ||||||| | || | | |||| |||||||| | || ||||||||||||| |||
Sbjct 1676 CATGGTGCTACTCCTTCACCG-CGGTCTGTTCAGTTGCAGTCGTTGCTAGGAAAAGACTC 1618
Query 1453 CTCTCAACAAAATCAGAACC 1472
||||||||||| ||| |||
Sbjct 1617 GTCTCAACAAAACCAGCACC 1598
Score = 99.0 bits (53), Expect = 1e-19
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 1224 TTCAGCTTCTCTGCAGTTACAGTACCTTACCGCTCTATGCACTCGTAACTCAG 1276
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1943 TTCAGCTTCTCTGCAGTTACAGTACCTTACCGCTCTATGCACTCGTAACTCAG 1891
Score = 71.3 bits (38), Expect = 2e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Minus
Query 896 GCATGGCATGTTTACTTCTGGCTAGCTTTTATTCCTTTGAT 936
||||||||||||||||||||||||||||||||||| |||||
Sbjct 2521 GCATGGCATGTTTACTTCTGGCTAGCTTTTATTCCATTGAT 2481
> Ahg952485 jgi|Araly1|952485|scaffold_78800001.1
Length=221
Score = 215 bits (116), Expect = 9e-55
Identities = 160/181 (88%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 10 aaaaaTGGCGGGAGGAGGAACGACCTTAGAGTACACACCAACTTGGGTGGTTGCTCTCGT 69
||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||
Sbjct 18 AAAAATGGCGGGAGGAGGAACGACCTTAGAGTATACGCCAACATGGGTGGTGGCTCTCGT 77
Query 70 CTGCTCCGTCATTGTCTCTATCTCTTTTGCCGTCGAGCGTCTCATTCACCGTGCCGGAAA 129
|||||| || || ||||| |||||||| | ||| ||||||||| | || |||||||||||
Sbjct 78 CTGCTCTGTTATCGTCTCCATCTCTTTCGGCGTTGAGCGTCTCCTCCATCGTGCCGGAAA 137
Query 130 GCACTTTAAGAAC-AACGATCAGAAGCAGCTTTTT-GGGGCATTACAAAAGATCAAAGAA 187
||||||| ||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 138 GCACTTTC-GAAAGAACGATCAGAAGCAACTTTTCAGGGGCATTACAAAAGATCAAAGAA 196
Query 188 G 188
|
Sbjct 197 G 197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61439565185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5