BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44150.1
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483538 jgi|Araly1|483538|fgenesh2_kg.4__2598__AT2G44150.1 2122 0.0
Ahg486462 jgi|Araly1|486462|fgenesh2_kg.5__2454__AT3G59960.1 601 6e-171
> Ahg483538 jgi|Araly1|483538|fgenesh2_kg.4__2598__AT2G44150.1
Length=1465
Score = 2122 bits (1149), Expect = 0.0
Identities = 1328/1413 (94%), Gaps = 18/1413 (1%)
Strand=Plus/Plus
Query 2 GCAACTGCCGCtctttc-ttctttcttactgtctcagatccgccattgtta---cttctt 57
||||||||||||||||| ||| ||||||||| |||||||| |||||||||| ||||||
Sbjct 1 GCAACTGCCGCTCTTTCTTTCCTTCTTACTGCCTCAGATCTGCCATTGTTACTTCTTCTT 60
Query 58 c-agttcttcttcttcAACAACAACAAGAAGT-A-ATAATTAGGGTTGAGAAACTTCGAA 114
| ||||||||||||||| |||||||||||| | | |||||||||| ||||| |||| |
Sbjct 61 CTTCTTCTTCTTCTTCAACGACAACAAGAAGTAACAGAATTAGGGTTTAGAAAGTTCGTA 120
Query 115 TTCCGAAACAACAGAGAGACGTACTAGTTTTAGC-CATCTTCTTTTCTTAGTTTCATCGA 173
|||||||||||||| |||||||||||||||| | |||||| ||||| || |||||||||
Sbjct 121 TTCCGAAACAACAGTTAGACGTACTAGTTTTA-CTCATCTTTTTTTC-TAATTTCATCGA 178
Query 174 ACTTGGTGTTACCTCAATAGGTCGACGCTCAAATCTTGCTTATTCTCTGGTTTTTAGAGC 233
||||||||||||||| |||||| || | ||||||||||||||||||||| ||||||||||
Sbjct 179 ACTTGGTGTTACCTCTATAGGTTGAAGTTCAAATCTTGCTTATTCTCTGATTTTTAGAGC 238
Query 234 TTCTT-TTAGATTCTTTCGACATGCCAGCCAGCAAAAAGATTTCGGACCGGAATCACTTA 292
||||| || |||||| ||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 239 TTCTTATT-GATTCTGTCGCCATGCCAGCCACCAAGAAGATTTCGGACCGGAATCACTTA 297
Query 293 GGGCAAGTGTTCGACAAGCTATTGAATCAGATTGGAGAATCTGAAGAATTCGAGTTACCG 352
|||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 298 GGGCAAGTGTTCAACAAGCTACTGAATCAGATTGGAGAATCTGAAGAATTTGAGTTACCG 357
Query 353 GAGTGGTTGAATAAAGGAAAACCTACTCCTTATATCTTCATCAGGCGCAATATATACTTG 412
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATTGGTTGAATAAAGGAAAACCTACTCCTTATATCTTCATCAGGCGCAATATATACTTG 417
Query 413 ACGAAGAAAGTCAAAAGGAGGGTTGAAGATGATGGAATCTTCTGTTCTTGCTCCTCCTCG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 418 ACGAAGAAAGTCAAAAGGAGGGTTGAAGATGATGGAATCTTCTGTTCTTGCTCTTCCTCG 477
Query 473 TCTCCTGGTTCTTCTTCAACTGTCTGTGGGAGTAATTGCCATTGTGGGATGCTATTCTCA 532
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 478 TCTCCTGGTTCTTCTTCAACTGTGTGTGGAAGTAATTGCCATTGTGGGATGCTATTCTCA 537
Query 533 AGCTGTTCCTCAAGTTGCAAGTGTGGGAGTGAGTGTAACAATAAGCCGTTCCAACAACGA 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGCTGTTCCTCAAGTTGCAAGTGTGGGAGTGAGTGTAACAATAAGCCGTTCCAACAACGG 597
Query 593 CATGTCAAGAAGATGAAGTTAATTCAGACAGAAAAATGCGGATCAGGGATTGTGGCAGAA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CATGTCAAGAAGATGAAGTTAATTCAGACAGAAAAATGCGGATCAGGGATTGTGGCAGAA 657
Query 653 GAAGAAATCGAAGCTGGAGAGTTTATCATTGAATATGTTGGAGAAGTTATTGATGATAAG 712
||||||||| || | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 658 GAAGAAATCAAACCAGGAGAGTTTATCATTGAATATGTCGGAGAAGTTATTGATGATAAG 717
Query 713 ACTTGTGAAGAGAGGCTTTGGAAGATGAAACACCGTGGCGAGACAAACTTTTATTTATGT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACTTGTGAAGAGAGGCTTTGGAAGATGAAACACCGTGGCGAGACAAACTTTTATTTATGT 777
Query 773 GAGATAACCAGAGATATGGTTATTGATGCTACTCATAAGGGAAACAAATCAAGATATATT 832
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 GAGATAACCAGAGATATGGTGATTGATGCTACTCATAAGGGAAACAAATCAAGATATATT 837
Query 833 AATCATAGCTGCAACCCTAATACGCAGATGCAGAAATGGATAATTGACGGCGAGACCAGA 892
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 838 AATCATAGCTGCAACCCGAATACACAGATGCAGAAATGGATAATTGACGGCGAGACCAGA 897
Query 893 ATCGGCATTTTCGCCACCCGTGGTATCAAAAAGGGAGAGCATTTGACCTATGATTATCAG 952
|| |||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 898 ATTGGCATTTTCGCCACACGTGGCATTAAAAAGGGAGAGCATTTGACCTATGATTATCAG 957
Query 953 TTTGTTCAGTTTGGTGCAGATCAAGACTGCCATTGTGGGGCTGTAGGTTGCAGAAGGAAG 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTTGTTCAGTTTGGTGCAGATCAAGACTGCCATTGTGGGGCTGTAGGTTGCAGAAGGAAG 1017
Query 1013 CTTGGTGTAAAACCTAGCAAACCTAAGATAGCCTCGGATGAAGCTTTTAATCTAGTGGCA 1072
||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1018 CTTGGTGTAAAACCTAGTAAACCTAAGTTAGCCTCGGATGAATCTTTTAATCTAGTGGCA 1077
Query 1073 CATGAATTGGCCCAGACACTGCCCAAGGTGCATCAAAATGGACTTGTAAATAGA-CACAT 1131
|||||| ||||||||||| |||||||||||||||||||||||| | || ||| | ||| |
Sbjct 1078 CATGAAGTGGCCCAGACAATGCCCAAGGTGCATCAAAATGGACATATACATA-ATCACGT 1136
Query 1132 AGATGCAGGAAAATCATGGAACAATCTTAGTCAAAGGGATACATGTTCGCGTAATTGCAT 1191
| |||| | |||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1137 TTCTCCAGGGATATCATGGAACAACCTTAGTCAAAGGGAAACATGTTCGCGTAATTGCAT 1196
Query 1192 TGGTGTGGTGATCAGGTTATCTCGCCCCACGAGTGATAGGTGTTTTGGCCTCGTTAGACA 1251
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1197 TGGTGTGGTGATCAGGTTATCTCGCCCCACTAGTGATAGGTGTTTTGGCCTAGTTAGACA 1256
Query 1252 TTTTGATGAGTATTCAAGAAAGCACTCGGTGATGTTCGAGGATGGTGTTACCGAGTTTGT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TTTTGATGAGTATTCAAGAAAGCACTCGGTGATGTTCGAGGATGGTGTTACCGAGTTTGT 1316
Query 1312 CGACATGTCGAGAGAAGACTGGGAGATTGTCTAATATTGTTTTCAGATTGCTT---TGAA 1368
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1317 CGACATGTCGAGAGAAGACTGGGAGATTGTCTAATATTGTTTTCAGCTTGCTGCCATGAA 1376
Query 1369 GTTGAGAAACCAA-AATAACCTGTCTTGGTAAA 1400
||||||||||| ||| | |||||||||||||
Sbjct 1377 GTTGAGAAACCTTGAATTATCTGTCTTGGTAAA 1409
> Ahg486462 jgi|Araly1|486462|fgenesh2_kg.5__2454__AT3G59960.1
Length=1064
Score = 601 bits (325), Expect = 6e-171
Identities = 583/704 (83%), Gaps = 32/704 (5%)
Strand=Plus/Plus
Query 385 TATCTTCATCAGGCGCAATATATACTTGACGAAGAAAGTCAAAAGGAGGGTTGAAGATGA 444
||||||||||| ||||||||||||||||| ||||||| |||||| ||| ||| ||||| |
Sbjct 126 TATCTTCATCAAGCGCAATATATACTTGAAGAAGAAATTCAAAAAGAGAGTTAAAGATCA 185
Query 445 TGGAATCTTCTGTTCTTGCTCCTCCTCGTCTCCTGGTTCTTCTTCAACTGTCTGTGGGAG 504
||| || |||||||||||||||| | | |||||| | ||||||||| | ||||| ||
Sbjct 186 TGGCATATTCTGTTCTTGCTCCT--T-GGATCCTGG--C-TCTTCAACTATTTGTGGCAG 239
Query 505 TAATTGCCATTGTGGGATGCTATTCTCAAGCTGTTCCTCAAGTTGCAAGTGTGGGAGTGA 564
| ||||| |||||||||| ||| ||||||||||||| || |||||||| || | |||||
Sbjct 240 TGATTGCAATTGTGGGATTCTACTCTCAAGCTGTTCTTCTAGTTGCAAATGCAGTAGTGA 299
Query 565 GTGTAACAATAAGCCGTTCCAACAACGACATGTCAAGAAGATGAAGTTAATTCAGACAGA 624
|| | ||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 300 ATGCACCAACAAGCCGTTCCAACAACGACATATCAAGAAGATGAAGTTAGTTCAGACAGA 359
Query 625 AAAATGCGGATCA-GGGATTGTGGCAGAAGAAGAAATCGAA-GCTGGAGAGTTTATCATT 682
||||| |||| | |||||||| ||||| ||||| ||| || | |||||||||||||||
Sbjct 360 GAAATGTGGAT-ATGGGATTGTAGCAGATGAAGATATC-AATTCAGGAGAGTTTATCATT 417
Query 683 GAATATGTT--GG-AGAAGTTATTGATGATAAGACTTGTGAAGAGAGGCTTTGGAAGATG 739
||||||||| || || ||||||||| || |||| ||||||||| |||||||||||| ||
Sbjct 418 GAATATGTTGGGGAAGTAGTTATTGACGAAAAGATTTGTGAAGAAAGGCTTTGGAAGCTG 477
Query 740 AAACACCGTGG-CGAGACAAACTTT-TATTTATGTGAGA-TAACCAGAGATATGGTTATT 796
|| || || ||||| ||| ||| ||||| ||| ||| |||| || | ||||| |||
Sbjct 478 AATCA-TAAGGTCGAGA-AAAATTTCTATTTGTGTCAGATTAACTGGA-ACATGGTGATT 534
Query 797 GATGCTACTCATAAGGGAAACAAATCAAGATATATTAATCATAGCTGCAACCCTAATAC- 855
||||| ||||||||||| || ||||||||||| || ||||| |||||||||||||||||
Sbjct 535 GATGCCACTCATAAGGGTAATAAATCAAGATACATCAATCACAGCTGCAACCCTAATACA 594
Query 856 GCAGATGCAGAAATGGATAATTGACGGCGAGACCAGAATCGGCAT-TTTCGCCACCCGTG 914
| |||||||||||||||||||||| || ||||| ||||||||||| ||| || ||||||
Sbjct 595 G-AGATGCAGAAATGGATAATTGATGGAGAGACAAGAATCGGCATATTT-GCTACCCGT- 651
Query 915 GT-ATCAAA-AAGGGAGAGCATTTGACCTATGATTATCAGTTTGTTCAGTTTGGTGCAGA 972
| || ||| || || ||||| ||||| || ||||| |||||||||||||||||||||||
Sbjct 652 TTCAT-AAACAAAGGCGAGCAGTTGACATACGATTACCAGTTTGTTCAGTTTGGTGCAGA 710
Query 973 TCAAGACTGCCATTGTGGGGCTGTAG-GTTGCAGAAGGAAGCTTGGTGTAAAACCTAGCA 1031
|||||| ||| | ||||| || || | ||||||||| ||||| |||| ||||||| |||
Sbjct 711 TCAAGATTGCTACTGTGGTGCAGT-GTGTTGCAGAAAAAAGCTAGGTGCAAAACCTTGCA 769
Query 1032 AACCTAAGAT-AG--CCTCGGATGAAGCTTTTAATCTAGTGGCA 1072
|| |||||| | ||||||| |||||| | || | |||||||
Sbjct 770 AAACTAAGAGGACAACCTCGGAAGAAGCTGTGAAACCAGTGGCA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63572618905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5