BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G44150.1 Length=1695 Score E Sequences producing significant alignments: (Bits) Value Ahg483538 jgi|Araly1|483538|fgenesh2_kg.4__2598__AT2G44150.1 2122 0.0 Ahg486462 jgi|Araly1|486462|fgenesh2_kg.5__2454__AT3G59960.1 601 6e-171 > Ahg483538 jgi|Araly1|483538|fgenesh2_kg.4__2598__AT2G44150.1 Length=1465 Score = 2122 bits (1149), Expect = 0.0 Identities = 1328/1413 (94%), Gaps = 18/1413 (1%) Strand=Plus/Plus Query 2 GCAACTGCCGCtctttc-ttctttcttactgtctcagatccgccattgtta---cttctt 57 ||||||||||||||||| ||| ||||||||| |||||||| |||||||||| |||||| Sbjct 1 GCAACTGCCGCTCTTTCTTTCCTTCTTACTGCCTCAGATCTGCCATTGTTACTTCTTCTT 60 Query 58 c-agttcttcttcttcAACAACAACAAGAAGT-A-ATAATTAGGGTTGAGAAACTTCGAA 114 | ||||||||||||||| |||||||||||| | | |||||||||| ||||| |||| | Sbjct 61 CTTCTTCTTCTTCTTCAACGACAACAAGAAGTAACAGAATTAGGGTTTAGAAAGTTCGTA 120 Query 115 TTCCGAAACAACAGAGAGACGTACTAGTTTTAGC-CATCTTCTTTTCTTAGTTTCATCGA 173 |||||||||||||| |||||||||||||||| | |||||| ||||| || ||||||||| Sbjct 121 TTCCGAAACAACAGTTAGACGTACTAGTTTTA-CTCATCTTTTTTTC-TAATTTCATCGA 178 Query 174 ACTTGGTGTTACCTCAATAGGTCGACGCTCAAATCTTGCTTATTCTCTGGTTTTTAGAGC 233 ||||||||||||||| |||||| || | ||||||||||||||||||||| |||||||||| Sbjct 179 ACTTGGTGTTACCTCTATAGGTTGAAGTTCAAATCTTGCTTATTCTCTGATTTTTAGAGC 238 Query 234 TTCTT-TTAGATTCTTTCGACATGCCAGCCAGCAAAAAGATTTCGGACCGGAATCACTTA 292 ||||| || |||||| ||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct 239 TTCTTATT-GATTCTGTCGCCATGCCAGCCACCAAGAAGATTTCGGACCGGAATCACTTA 297 Query 293 GGGCAAGTGTTCGACAAGCTATTGAATCAGATTGGAGAATCTGAAGAATTCGAGTTACCG 352 |||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 298 GGGCAAGTGTTCAACAAGCTACTGAATCAGATTGGAGAATCTGAAGAATTTGAGTTACCG 357 Query 353 GAGTGGTTGAATAAAGGAAAACCTACTCCTTATATCTTCATCAGGCGCAATATATACTTG 412 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 GATTGGTTGAATAAAGGAAAACCTACTCCTTATATCTTCATCAGGCGCAATATATACTTG 417 Query 413 ACGAAGAAAGTCAAAAGGAGGGTTGAAGATGATGGAATCTTCTGTTCTTGCTCCTCCTCG 472 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 418 ACGAAGAAAGTCAAAAGGAGGGTTGAAGATGATGGAATCTTCTGTTCTTGCTCTTCCTCG 477 Query 473 TCTCCTGGTTCTTCTTCAACTGTCTGTGGGAGTAATTGCCATTGTGGGATGCTATTCTCA 532 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 478 TCTCCTGGTTCTTCTTCAACTGTGTGTGGAAGTAATTGCCATTGTGGGATGCTATTCTCA 537 Query 533 AGCTGTTCCTCAAGTTGCAAGTGTGGGAGTGAGTGTAACAATAAGCCGTTCCAACAACGA 592 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 AGCTGTTCCTCAAGTTGCAAGTGTGGGAGTGAGTGTAACAATAAGCCGTTCCAACAACGG 597 Query 593 CATGTCAAGAAGATGAAGTTAATTCAGACAGAAAAATGCGGATCAGGGATTGTGGCAGAA 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 CATGTCAAGAAGATGAAGTTAATTCAGACAGAAAAATGCGGATCAGGGATTGTGGCAGAA 657 Query 653 GAAGAAATCGAAGCTGGAGAGTTTATCATTGAATATGTTGGAGAAGTTATTGATGATAAG 712 ||||||||| || | ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 658 GAAGAAATCAAACCAGGAGAGTTTATCATTGAATATGTCGGAGAAGTTATTGATGATAAG 717 Query 713 ACTTGTGAAGAGAGGCTTTGGAAGATGAAACACCGTGGCGAGACAAACTTTTATTTATGT 772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 ACTTGTGAAGAGAGGCTTTGGAAGATGAAACACCGTGGCGAGACAAACTTTTATTTATGT 777 Query 773 GAGATAACCAGAGATATGGTTATTGATGCTACTCATAAGGGAAACAAATCAAGATATATT 832 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 778 GAGATAACCAGAGATATGGTGATTGATGCTACTCATAAGGGAAACAAATCAAGATATATT 837 Query 833 AATCATAGCTGCAACCCTAATACGCAGATGCAGAAATGGATAATTGACGGCGAGACCAGA 892 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 838 AATCATAGCTGCAACCCGAATACACAGATGCAGAAATGGATAATTGACGGCGAGACCAGA 897 Query 893 ATCGGCATTTTCGCCACCCGTGGTATCAAAAAGGGAGAGCATTTGACCTATGATTATCAG 952 || |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 898 ATTGGCATTTTCGCCACACGTGGCATTAAAAAGGGAGAGCATTTGACCTATGATTATCAG 957 Query 953 TTTGTTCAGTTTGGTGCAGATCAAGACTGCCATTGTGGGGCTGTAGGTTGCAGAAGGAAG 1012 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 TTTGTTCAGTTTGGTGCAGATCAAGACTGCCATTGTGGGGCTGTAGGTTGCAGAAGGAAG 1017 Query 1013 CTTGGTGTAAAACCTAGCAAACCTAAGATAGCCTCGGATGAAGCTTTTAATCTAGTGGCA 1072 ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1018 CTTGGTGTAAAACCTAGTAAACCTAAGTTAGCCTCGGATGAATCTTTTAATCTAGTGGCA 1077 Query 1073 CATGAATTGGCCCAGACACTGCCCAAGGTGCATCAAAATGGACTTGTAAATAGA-CACAT 1131 |||||| ||||||||||| |||||||||||||||||||||||| | || ||| | ||| | Sbjct 1078 CATGAAGTGGCCCAGACAATGCCCAAGGTGCATCAAAATGGACATATACATA-ATCACGT 1136 Query 1132 AGATGCAGGAAAATCATGGAACAATCTTAGTCAAAGGGATACATGTTCGCGTAATTGCAT 1191 | |||| | |||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1137 TTCTCCAGGGATATCATGGAACAACCTTAGTCAAAGGGAAACATGTTCGCGTAATTGCAT 1196 Query 1192 TGGTGTGGTGATCAGGTTATCTCGCCCCACGAGTGATAGGTGTTTTGGCCTCGTTAGACA 1251 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1197 TGGTGTGGTGATCAGGTTATCTCGCCCCACTAGTGATAGGTGTTTTGGCCTAGTTAGACA 1256 Query 1252 TTTTGATGAGTATTCAAGAAAGCACTCGGTGATGTTCGAGGATGGTGTTACCGAGTTTGT 1311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 TTTTGATGAGTATTCAAGAAAGCACTCGGTGATGTTCGAGGATGGTGTTACCGAGTTTGT 1316 Query 1312 CGACATGTCGAGAGAAGACTGGGAGATTGTCTAATATTGTTTTCAGATTGCTT---TGAA 1368 |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1317 CGACATGTCGAGAGAAGACTGGGAGATTGTCTAATATTGTTTTCAGCTTGCTGCCATGAA 1376 Query 1369 GTTGAGAAACCAA-AATAACCTGTCTTGGTAAA 1400 ||||||||||| ||| | ||||||||||||| Sbjct 1377 GTTGAGAAACCTTGAATTATCTGTCTTGGTAAA 1409 > Ahg486462 jgi|Araly1|486462|fgenesh2_kg.5__2454__AT3G59960.1 Length=1064 Score = 601 bits (325), Expect = 6e-171 Identities = 583/704 (83%), Gaps = 32/704 (5%) Strand=Plus/Plus Query 385 TATCTTCATCAGGCGCAATATATACTTGACGAAGAAAGTCAAAAGGAGGGTTGAAGATGA 444 ||||||||||| ||||||||||||||||| ||||||| |||||| ||| ||| ||||| | Sbjct 126 TATCTTCATCAAGCGCAATATATACTTGAAGAAGAAATTCAAAAAGAGAGTTAAAGATCA 185 Query 445 TGGAATCTTCTGTTCTTGCTCCTCCTCGTCTCCTGGTTCTTCTTCAACTGTCTGTGGGAG 504 ||| || |||||||||||||||| | | |||||| | ||||||||| | ||||| || Sbjct 186 TGGCATATTCTGTTCTTGCTCCT--T-GGATCCTGG--C-TCTTCAACTATTTGTGGCAG 239 Query 505 TAATTGCCATTGTGGGATGCTATTCTCAAGCTGTTCCTCAAGTTGCAAGTGTGGGAGTGA 564 | ||||| |||||||||| ||| ||||||||||||| || |||||||| || | ||||| Sbjct 240 TGATTGCAATTGTGGGATTCTACTCTCAAGCTGTTCTTCTAGTTGCAAATGCAGTAGTGA 299 Query 565 GTGTAACAATAAGCCGTTCCAACAACGACATGTCAAGAAGATGAAGTTAATTCAGACAGA 624 || | ||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 300 ATGCACCAACAAGCCGTTCCAACAACGACATATCAAGAAGATGAAGTTAGTTCAGACAGA 359 Query 625 AAAATGCGGATCA-GGGATTGTGGCAGAAGAAGAAATCGAA-GCTGGAGAGTTTATCATT 682 ||||| |||| | |||||||| ||||| ||||| ||| || | ||||||||||||||| Sbjct 360 GAAATGTGGAT-ATGGGATTGTAGCAGATGAAGATATC-AATTCAGGAGAGTTTATCATT 417 Query 683 GAATATGTT--GG-AGAAGTTATTGATGATAAGACTTGTGAAGAGAGGCTTTGGAAGATG 739 ||||||||| || || ||||||||| || |||| ||||||||| |||||||||||| || Sbjct 418 GAATATGTTGGGGAAGTAGTTATTGACGAAAAGATTTGTGAAGAAAGGCTTTGGAAGCTG 477 Query 740 AAACACCGTGG-CGAGACAAACTTT-TATTTATGTGAGA-TAACCAGAGATATGGTTATT 796 || || || ||||| ||| ||| ||||| ||| ||| |||| || | ||||| ||| Sbjct 478 AATCA-TAAGGTCGAGA-AAAATTTCTATTTGTGTCAGATTAACTGGA-ACATGGTGATT 534 Query 797 GATGCTACTCATAAGGGAAACAAATCAAGATATATTAATCATAGCTGCAACCCTAATAC- 855 ||||| ||||||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct 535 GATGCCACTCATAAGGGTAATAAATCAAGATACATCAATCACAGCTGCAACCCTAATACA 594 Query 856 GCAGATGCAGAAATGGATAATTGACGGCGAGACCAGAATCGGCAT-TTTCGCCACCCGTG 914 | |||||||||||||||||||||| || ||||| ||||||||||| ||| || |||||| Sbjct 595 G-AGATGCAGAAATGGATAATTGATGGAGAGACAAGAATCGGCATATTT-GCTACCCGT- 651 Query 915 GT-ATCAAA-AAGGGAGAGCATTTGACCTATGATTATCAGTTTGTTCAGTTTGGTGCAGA 972 | || ||| || || ||||| ||||| || ||||| ||||||||||||||||||||||| Sbjct 652 TTCAT-AAACAAAGGCGAGCAGTTGACATACGATTACCAGTTTGTTCAGTTTGGTGCAGA 710 Query 973 TCAAGACTGCCATTGTGGGGCTGTAG-GTTGCAGAAGGAAGCTTGGTGTAAAACCTAGCA 1031 |||||| ||| | ||||| || || | ||||||||| ||||| |||| ||||||| ||| Sbjct 711 TCAAGATTGCTACTGTGGTGCAGT-GTGTTGCAGAAAAAAGCTAGGTGCAAAACCTTGCA 769 Query 1032 AACCTAAGAT-AG--CCTCGGATGAAGCTTTTAATCTAGTGGCA 1072 || |||||| | ||||||| |||||| | || | ||||||| Sbjct 770 AAACTAAGAGGACAACCTCGGAAGAAGCTGTGAAACCAGTGGCA 813 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63572618905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5