BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44180.1
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483541 jgi|Araly1|483541|fgenesh2_kg.4__2601__AT2G44180.1 2268 0.0
Ahg346227 jgi|Araly1|346227|fgenesh1_pg.C_scaffold_4002569 1742 0.0
Ahg486467 jgi|Araly1|486467|fgenesh2_kg.5__2459__AT3G59990.3 1308 0.0
Ahg922978 jgi|Araly1|922978|scaffold_104259.1 383 2e-105
> Ahg483541 jgi|Araly1|483541|fgenesh2_kg.4__2601__AT2G44180.1
Length=1417
Score = 2268 bits (1228), Expect = 0.0
Identities = 1356/1418 (96%), Gaps = 8/1418 (1%)
Strand=Plus/Plus
Query 117 GAACACTGAAGCCGAGTCCTCTAATGGAAACGAGTCTCAGTTAAG-TTCTGACTTAACGA 175
||| || ||||||||||||||||||||||| ||| |||| || || ||||||||||||||
Sbjct 1 GAA-ACCGAAGCCGAGTCCTCTAATGGAAAAGAGACTCAATT-AGCTTCTGACTTAACGA 58
Query 176 AGAGTCTTGATCTGGCTGAAGTGAAGGAAGACGAAAAGGATAATAACCaagaagaagaag 235
||| ||||||||| ||| ||||||||||| ||||||||||| |||||| |||||||||
Sbjct 59 AGAATCTTGATCTTGCTCAAGTGAAGGAACACGAAAAGGATGATAACC---AAGAAGAAG 115
Query 236 atggactgaaagctgaggcttcaacgaagaagaagaagaagaaaagtaaaagcaagaaga 295
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 ATGGACTGAAAGCTGAGCCTTCAACGAAGAAGAAGAAGAAGAAAAGTAAAAGCAAGAAGA 175
Query 296 agaagaGTTCTCTTCAACAGACTGATCCTCCTTCAATTCCTGTTCTTGAGCTCTTCCCTT 355
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 176 AGAAGAGTTCCCTTCAACAGACTGATCCACCTTCAATTCCTGTTCTTGAGCTCTTCCCTT 235
Query 356 CTGGAGATTTTCCTCAAGGTGAAATCCAACAGTACAATGATGATAATTTGTGGAGAACAA 415
|||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 236 CTGGAGATTTTCCTGAAGGTGAAATCCAACAGTATAAGGATGATAATTTGTGGAGAACAA 295
Query 416 CATCTGAAGAGAAGAGAGAGATGGAGAGGCTGCAAAAGCCGATATATAACTCTCTTCGCC 475
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 296 CATCTGAAGAGAAGAGAGAGATGGAGCGGCTGCAAAAGCCGATATATAACTCTCTTCGCC 355
Query 476 AAGCAGCGGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAGTATATTGAAGCCTGGAA 535
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AAGCAGCAGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAGTATATTGAAGCCTGGAA 415
Query 536 TGTTGATGATTGATCTCTGTGAGACTTTAGAGAACACTGTTCGTAAGTTGATATCAGAGA 595
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 416 TGTTGATGATTGATCTCTGTGAGACCTTAGAGAACACCGTTCGTAAGTTGATATCAGAGA 475
Query 596 ATGGTCTTCAAGCTGGTATCGCCTTTCCTACAGGATGTTCACTGAATAATGTTGCTGCTC 655
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 476 ATGGTCTTCAAGCTGGTATCGCCTTTCCTACAGGATGTTCTCTGAATAATGTTGCTGCTC 535
Query 656 ATTGGACACCAAACTCTGGAGATAAGACTGTCCTTCAGTATGATGATGTGATGAAGCTGG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 536 ATTGGACACCAAACTCTGGAGATAAGACTGTCCTTCAGTATGATGATGTGATGAAGCCAG 595
Query 716 ATTTTGGAACACATATTGATGGGCACATTGTTGATTCTGCTTTTACAGTTGCGTTCAATC 775
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 596 ATTTTGGAACACATATTGATGGGCATATTGTTGATTCCGCTTTTACAGTTGCATTCAATC 655
Query 776 CTATGTTTGATCCTCTTTTAGCAGCCTCGCGTGACGCAACATATACTGGTATCAAGGAAG 835
|||||| ||||||||| |||||||| || ||||| ||||||||||| |||||||||||||
Sbjct 656 CTATGTATGATCCTCTCTTAGCAGCTTCCCGTGAAGCAACATATACCGGTATCAAGGAAG 715
Query 836 CCGGGGTAGATGTCCGGCTCTGTGATGTTGGTGCTGCAGTTCAGGAGGTCATGGAGTCTT 895
|||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 716 CCGGTGTAGATGTTCGGCTCTGTGATGTTGGTGCTGCAATTCAGGAGGTCATGGAGTCTT 775
Query 896 ATGAGGTTGAAATCAATGGAAAAGTCTACCAAGTCAAAAGTATCAGAAACCTGAATGGGC 955
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 776 ATGAGGTTGATATCAATGGAAAAGTCTACCAAGTCAAGAGTATCAGAAACCTGAATGGGC 835
Query 956 ACAGCATTGGACGCTATCAGATACACGCTGAAAAATCAGTTCCTAATGTTAGAGGAGGCG 1015
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 836 ACAGCATTGGACGCTATCAGATACACGCCGAAAAATCTGTTCCTAATGTTAGAGGAGGCG 895
Query 1016 AGCAGACGAAAATGGAAGAGGGTGAATTATATGCCATTGAAACTTTTGGATCAACAGGGA 1075
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 896 AGCAGACGAAAATGGAAGAGGGTGAATTATATGCCATTGAAACATTTGGATCAACAGGGA 955
Query 1076 AAGGATATGTAAGAGAAGACTTAGAATGTAGCCATTACATGAAAAACTATGATGTGGGTC 1135
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AGGGATATGTAAGAGAGGACTTAGAATGTAGCCATTACATGAAAAACTATGATGTGGGTC 1015
Query 1136 ATGTACCTTTGAGGTTACCAAGGGCAAAACAACTCCTTGCCACTATTAACAAGAACTTCT 1195
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1016 ACGTACCTTTGAGGTTACCAAGAGCAAAACAACTCCTTGCCACTATTAACAAGAACTTCT 1075
Query 1196 CCACGCTAGCCTTCTGCAGACGTTATTTGGACCGCCTTGGTGAAACAAAATACTTGATGG 1255
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1076 CCACTCTAGCCTTCTGCAGACGCTATTTGGACCGCCTTGGTGAAACAAAATATTTGATGG 1135
Query 1256 CTTTAAAGAATCTTTGTGATTCTGGCATAATTGAGCCATGTCCTCCAGTGTGTGATGTCA 1315
|||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |
Sbjct 1136 CTTTAAAGAATCTTTGTGATTCTGGCATTATTGAGCCATGCCCTCCAGTTTGTGATGTGA 1195
Query 1316 AAGGAAGCTATATTTCTCAGTTTGAGCATACAATCCTGTTGCGACCAACTTGCAAAGAGA 1375
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1196 AAGGAAGCTATATTTCTCAGTTTGAGCATACAATCTTGTTGCGACCAACTTGCAAAGAGA 1255
Query 1376 TTATTTCCAAAGGAGACGATTATTGAAATAGTGATTTTCACAGAACTTGAAGCAGTTGTT 1435
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1256 TTATTTCCAAAGGAGACGATTATTGAAATGGTGATTTTCACAGAACTTGAAGCAGTTGTT 1315
Query 1436 CTTCTTGAGTTTGTATAATAGTTTTGGAAGGCTTTTTAAGTCTTGTGCTCAAATATTTGT 1495
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1316 CTTCTTGAGTTTGTATAATAGTTTTGGAAGGCTTTTAAAGTCTTGTGCTCAAATATTTGT 1375
Query 1496 ATGTTCTTCGAAGATGATTCTAAGT-ATAAGAGCTTAG 1532
|||||||||||| |||||||||| | ||||||||||||
Sbjct 1376 ATGTTCTTCGAATATGATTCTAA-TCATAAGAGCTTAG 1412
> Ahg346227 jgi|Araly1|346227|fgenesh1_pg.C_scaffold_4002569
Length=1365
Score = 1742 bits (943), Expect = 0.0
Identities = 1057/1113 (95%), Gaps = 4/1113 (0%)
Strand=Plus/Plus
Query 291 gaagaagaagaGTTCTC-TTCAACAGACTGATCCTCCTTCAATTCCTGTTCTTGAGCTCT 349
||||||||||| ||| | |||||||||||||||| |||||||||||||||||||| ||||
Sbjct 255 GAAGAAGAAGAATTC-CATTCAACAGACTGATCCACCTTCAATTCCTGTTCTTGACCTCT 313
Query 350 TCCCTTCTGGAGATTTTCCTCAAGGTGAAATCCAACAGTACAATGATGATAATTTGTGGA 409
| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 314 TTCCTTCTGGAGAATTTCCTCAAGGTGAAATCCAACAATACAAGGATGATAATTTGTGGA 373
Query 410 GAACAACATCTGAAGAGAAGAGAGAGATGGAGAGGCTGCAAAAGCCGATATATAACTCTC 469
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 374 GAACAACATCCGAAGAGAAGAGAGAGATGGAGAGGCTTCAAAAGCCGATATATAACTCTC 433
Query 470 TTCGCCAAGCAGCGGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAGTATATTGAAGC 529
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 434 TTCGCCAAGCAGCGGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAGCATATTGAAAC 493
Query 530 CTGGAATGTTGATGATTGATCTCTGTGAGACTTTAGAGAACACTGTTCGTAAGTTGATAT 589
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 494 CTGGAATGTTGATGATTGATCTCTGTGAGACCTTAGAGAACACTGTTTGTAAGTTGATAT 553
Query 590 CAGAGAATGGTCTTCAAGCTGGTATCGCCTTTCCTACAGGATGTTCACTGAATAATGTTG 649
|||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||
Sbjct 554 CAGAGAATGGTCTTCAAGCTGGTATCGCATTTCCTACAGGGTGTTCTCTGAATAACGTTG 613
Query 650 CTGCTCATTGGACACCAAACTCTGGAGATAAGACTGTCCTTCAGTATGATGATGTGATGA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 614 CTGCTCATTGGACACCAAACTCTGGAGATAAGACTGTCCTTCAGTATGATGATGTCATGA 673
Query 710 AGCTGGATTTTGGAACACATATTGATGGGCACATTGTTGATTCTGCTTTTACAGTTGCGT 769
|| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 674 AGTTGGATTTTGGAACACATATTGATGGGCACATTGTTGATTCCGCTTTCACAGTTGCCT 733
Query 770 TCAATCCTATGTTTGATCCTCTTTTAGCAGCCTCGCGTGACGCAACATATACTGGTATCA 829
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 734 TCAATCCTATGTTTGATCCTCTTTTAGCAGCCTCACGTGAAGCAACATATACCGGTATCA 793
Query 830 AGGAAGCCGGGGTAGATGTCCGGCTCTGTGATGTTGGTGCTGCAGTTCAGGAGGTCATGG 889
||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 794 AGGAAGCTGGGGTAGATGTCCGTCTCTGTGATGTTGGTGCTGCAATTCAGGAGGTCATGG 853
Query 890 AGTCTTATGAGGTTGAAATCAATGGAAAAGTCTACCAAGTCAAAAGTATCAGAAACCTGA 949
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 854 AGTCTTATGAGGTTAAAATCAATGGAAAAGGCTACCAAGTCAAAAGTATCAGAAACCTGA 913
Query 950 ATGGGCACAGCATTGGACGCTATCAGATACACGCTGAAAAATCAGTTCCTAATGTTAGAG 1009
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 914 ATGGGCACAGCATTGGACGCTATCAGATACACGCTGAAAAATCTGTTCCTAATGTTAGAG 973
Query 1010 GAGGCGAGCAGACGAAAATGGAAGAGGGTGAATTATATGCCATTGAAACTTTTGGATCAA 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 GAGGCGAGCAGACGAAAATGGAAGAGGGTGAATTATATGCCATTGAAACTTTTGGATCAA 1033
Query 1070 CAGGGAAAGGATATGTAAGAGAAGACTTAGAATGTAGCCATTACATGAAAAACTATGATG 1129
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1034 CCGGGAAAGGATATGTGAGAGAGGACTTAGAATGTAGCCATTACATGAAAAACTACGATG 1093
Query 1130 TGGGTCATGTACCTTTGAGGTTACCAAGGGCAAAACAACTCCTTGCCACTATTAACAAGA 1189
|||| || || |||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1094 TGGGACACGTCCCTTTGAGGTTACCAAAAGCAAAACAACTCCTTGCCACCATTAACAAGA 1153
Query 1190 ACTTCTCCACGCTAGCCTTCTGCAGACGTTATTTGGACCGCCTTGGTGAAACAAAATACT 1249
|||||||||| ||||| |||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 1154 ACTTCTCCACTCTAGCTTTCTGCGGACGCTATTTGGACCGCCTTGGTGAAACGAAATACT 1213
Query 1250 TGATGGCTTTAAAGAATCTTTGTGATTCTGGCATAATTGAGCCATGTCC-TCCAGTGTGT 1308
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1214 TGATGGCTTTAAAGAATCTTTGTGATTCTGGCATAATTGAGCCATG-CCGTCCAGTGTGT 1272
Query 1309 GATGTCAAAGGAAGCTATATTTCTCAGTTTGAGCATACAATCCTGTTGCGACCAACTTGC 1368
||||| |||||||||||| ||||||||||||||||||| || ||||||| |||||||||
Sbjct 1273 GATGTAAAAGGAAGCTATGTTTCTCAGTTTGAGCATACGATTTTGTTGCGGCCAACTTGC 1332
Query 1369 AAAGAGATTATTTCCAAAGGAGACGATTATTGA 1401
|||||||||||||||||||||||||||||||||
Sbjct 1333 AAAGAGATTATTTCCAAAGGAGACGATTATTGA 1365
> Ahg486467 jgi|Araly1|486467|fgenesh2_kg.5__2459__AT3G59990.3
Length=1577
Score = 1308 bits (708), Expect = 0.0
Identities = 1031/1188 (87%), Gaps = 17/1188 (1%)
Strand=Plus/Plus
Query 223 Caa-gaagaagaagatggactg-aaagctgaggcttcaacgaagaagaagaagaagaa-a 279
||| || ||||| || ||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 208 CAACGATGAAGATGAAGGA-AGCAAAGCTGAGGCTTCAACGAAGAAGAAGAAGAAGAAGA 266
Query 280 agtaaaagcaagaagaagaa-gaGTTCTCTTCAACAGACTGATCCTCCTTCAATTCCTGT 338
| |||||||||||||||||| || || | |||||||||| |||| ||||| |||||||
Sbjct 267 A-TAAAAGCAAGAAGAAGAAGGAACTC-CCTCAACAGACTAATCCACCTTCGATTCCTG- 323
Query 339 TC-TTGAGCTCTTCCCTTCTGGAGATTTTCCTCAAGGTGAAATCCAACAGTACAATGATG 397
|| ||||||||||||| |||||||| |||||| |||||||||||||| |||| || ||||
Sbjct 324 TCGTTGAGCTCTTCCCATCTGGAGAGTTTCCTGAAGGTGAAATCCAAGAGTATAAGGATG 383
Query 398 ATAATTTGTGGAGAACAACATCTGAAGAGAAGAGAGAGATGGAGAGGCTGCAAAAGCCGA 457
||||| |||||||||||||||||||||||||||||||| ||||| | || ||||||| |
Sbjct 384 ATAATCTGTGGAGAACAACATCTGAAGAGAAGAGAGAGTTGGAGCGTTTGGAAAAGCCAA 443
Query 458 TATATAACTCTCTTCGCCAAGCAGCGGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAA 517
|||| |||||| |||||||||| || ||||||||||| || ||| | || ||| | ||||
Sbjct 444 TATACAACTCTGTTCGCCAAGCTGCAGAAGTTCATCGCCAGGTTCGTAAATATGTCAGAA 503
Query 518 GTATATTGAAGCCTGGAATGTTGATGATTGATCTCTGTGAGACTTTAGAGAACACTGTTC 577
| ||| ||||||||||||||||||||| |||| | |||||||| |||||||| |||||||
Sbjct 504 GCATAGTGAAGCCTGGAATGTTGATGACTGATATATGTGAGACCTTAGAGAATACTGTTC 563
Query 578 GTAAGTTGATATCAGAGAATGGTCTTCAAGCTGGTATCGCCTTTCCTACAGGATGTTCAC 637
| ||||||||||||||||||||||||||||||||||| || || ||||||||||| ||
Sbjct 564 GCAAGTTGATATCAGAGAATGGTCTTCAAGCTGGTATTGCATTCCCTACAGGATGCTCTT 623
Query 638 TGAATAATGTTGCTGCTCATTGGACACCAAACTCTGGAGATAAGACTGTCCTTCAGTATG 697
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 624 TGAATTGGGTCGCTGCTCATTGGACACCAAACTCTGGAGATAAGACTGTACTTCAGTATG 683
Query 698 ATGATGTGATGAAGCTGGATTTTGGAACACATATTGATGGGCACATTGTTGATTCTGCTT 757
| ||||| ||||| |||||||||||||||||||||||||||| ||| |||| | ||| |
Sbjct 684 ACGATGTTATGAAATTGGATTTTGGAACACATATTGATGGGCATATTATTGACTGTGCAT 743
Query 758 TTACAGTTGCGTTCAATCCTATGTTTGATCCTCTTTTAGCAGCCTCGCGTGACGCAACAT 817
|||||||||||||||| |||||||| |||||||| ||||||||||| ||||| || || |
Sbjct 744 TTACAGTTGCGTTCAACCCTATGTTCGATCCTCTCTTAGCAGCCTCTCGTGAAGCTACGT 803
Query 818 ATACTGGTATCAAGGAAGCCGGGGTAGATGTCCGGCTCTGTGATGTTGGTGCTGCAGTTC 877
|||| |||||||||||||| ||| | |||||||| ||||||||| | ||||||||| |||
Sbjct 804 ATACCGGTATCAAGGAAGCTGGGATCGATGTCCGTCTCTGTGATATCGGTGCTGCAATTC 863
Query 878 AGGAGGTCATGGAGTCTTATGAGGTTGAAATCAATGGAAAAGTCTACCAAGTCAAAAGTA 937
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 864 AGGAGGTCATGGAGTCTTATGAGGTTGAAATCAATGGAAAGGTCTTCCAAGTCAAAAGTA 923
Query 938 TCAGAAACCTGAATGGGCACAGCATTGGACGCTATCAGATACACGCTGAAAAATCAGTTC 997
|||||||| |||||||||| |||||||||| |||||||||||| |||| ||||| ||||
Sbjct 924 TCAGAAACTTGAATGGGCATAGCATTGGACCCTATCAGATACATGCTGGGAAATCCGTTC 983
Query 998 CTAAT-GTTAGAGG-AGGCGAGCAGACGAAA-ATGGAAGAGGGTGAATTATATGCCATTG 1054
||| | |||| ||| |||||||||||| ||| ||||||||||| || || |||||||| |
Sbjct 984 CTA-TCGTTA-AGGGAGGCGAGCAGAC-AAAGATGGAAGAGGGCGAGTTTTATGCCATCG 1040
Query 1055 AAACTTTTGGATCAACAGGGAAAGGATATGTAAGAGAAGACTTAGAATGTAGCCATTACA 1114
|||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1041 AAACATTTGGATCAACCGGGAAAGGATATGTGAGAGAAGACTTAGAATGTAGTCATTACA 1100
Query 1115 TGAAAAACTATGATG-TGGGTCATGTACCTTTGAGGTTACCAAGGGCAAAACAACTCCTT 1173
|||| |||| ||| | | || || || || |||||||| || || ||||||||||| |||
Sbjct 1101 TGAAGAACTTTGAAGCTAGG-CACGTCCCCTTGAGGTTGCCTAGAGCAAAACAACTTCTT 1159
Query 1174 GCCACTATTAACAAGAACTTCTCCACGCTAGCCTTCTGCAGACGTTATTTGGACCGCCTT 1233
||||| ||||||||||| ||||| ||||| |||||||||||||| |||||||||||| ||
Sbjct 1160 GCCACCATTAACAAGAATTTCTCGACGCTCGCCTTCTGCAGACGCTATTTGGACCGCATT 1219
Query 1234 GGTGAAACAAAATACTTGATGGCTTTAAAGAATCTTTGTGATTCTGGCATAATTGAGCCA 1293
|||||||| |||||||| |||||| |||||||||| |||||||||||||| || |||||
Sbjct 1220 GGTGAAACCAAATACTTAATGGCTCTAAAGAATCTGTGTGATTCTGGCATTGTTCAGCCA 1279
Query 1294 TGTCCTCCAGTGTGTGATGTCAAAGGAAGCTATATTTCTCAGTTTGAGCATACAATCCTG 1353
| |||||| |||||||||| || |||||||| | || |||||||| || || || |
Sbjct 1280 TATCCTCCTCTGTGTGATGTGAAGGGAAGCTACGTATCACAGTTTGAACACACCATTTTA 1339
Query 1354 TTGCGACCAACTTGCAAAGAGATTATTTCCAAAGGAGACGATTATTGA 1401
||||||| |||||||||||| || ||||||| |||||||| || |||
Sbjct 1340 CTGCGACCTACTTGCAAAGAGGTTCTTTCCAAGGGAGACGACTACTGA 1387
> Ahg922978 jgi|Araly1|922978|scaffold_104259.1
Length=471
Score = 383 bits (207), Expect = 2e-105
Identities = 222/229 (97%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 291 gaagaagaagaGT-TCTCTTCAACAGACTGATCCTCCTTCAATTCCTGTTCTTGAGCTCT 349
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 GAAGAAGAAGAGTATC-CTTCAACAGACTGATCCTCCTTCAATTCCTGTTCTTGAGCTCT 90
Query 350 TCCCTTCTGGAGATTTTCCTCAAGGTGAAATCCAACAGTACAATGATGATAATTTGTGGA 409
|||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||
Sbjct 91 TCCCTTCTGGAGATTTTCCTGAAGCTGAAATCCAACAGTACAAGGATGATAATTTGTGGA 150
Query 410 GAACAACATCTGAAGAGAAGAGAGAGATGGAGAGGCTGCAAAAGCCGATATATAACTCTC 469
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 151 GAACAACATCTGAAGAGAAGAGAGAGATGGAGCGGCTGCAAAAGCCGATATATAACTCTC 210
Query 470 TTCGCCAAGCAGCGGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAG 518
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 211 TTCGCCAAGCAGCAGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAG 259
Score = 292 bits (158), Expect = 4e-78
Identities = 170/176 (97%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 1248 CTTGATGGCTTTAAAGAATCTTTGTGATTCTGGCATAATTGAGCCATGTCCTCCAGTGTG 1307
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 296 CTTGATGGCTTTAAAGAATCTTTGTGATTCTGGCATTATTGAGCCATGTCCTCCAGTGTG 355
Query 1308 TGATGTCAAAGGAAGCTATATTTCTCAGTTTGAGCATACAATCCTGTTGCGACCAACTTG 1367
|||||| |||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 356 TGATGTGAAAGGAAGCTATATTTCTCAGTTTGAGCATACAATCTTATTACGACCAACTTG 415
Query 1368 CAAAGAGATTATTTCCAAAGGAGACGATTATTGAAATAGTGATTTTCACAGAACTT 1423
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 416 CAAAGAGATTATTTCCAAAGGAGACGATTATTGAAATGGTGATTTTCACAGAACTT 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59954045630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5