BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44190.1
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322085 jgi|Araly1|322085|fgenesh1_pm.C_scaffold_4002142 2119 0.0
> Ahg322085 jgi|Araly1|322085|fgenesh1_pm.C_scaffold_4002142
Length=1428
Score = 2119 bits (1147), Expect = 0.0
Identities = 1338/1431 (94%), Gaps = 9/1431 (1%)
Strand=Plus/Plus
Query 156 ATGGAGGCGAGAATCGGCCGATCCATGGAACACCCATCTACACCTGCGATTAATGCTCCG 215
||||||||||||||||||||||| ||||| ||||||||||| || ||||||| |||||||
Sbjct 1 ATGGAGGCGAGAATCGGCCGATCTATGGAGCACCCATCTACGCCGGCGATTACTGCTCCG 60
Query 216 GCGCCGGTTCCTCCTCCTTCTACGAGGCGGCCGAGAGTAAGAGAAGTGAGCTCGAGATTC 275
|||||||||||||| || || ||| |||||||||||||||||||||||||||| ||||||
Sbjct 61 GCGCCGGTTCCTCCACCATCAACGCGGCGGCCGAGAGTAAGAGAAGTGAGCTCTAGATTC 120
Query 276 ATGTCTCCCATTTCTTCTTCGTCATCGTCGTCTTCCTCTTCTTCCGCCGGAGATCTCCAT 335
||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 121 ATGTCTCCCGTTTCTTCGTCGTCATCGTCATCTTCCTCCTCTTCCGCCGGAGATCTCCAT 180
Query 336 CAATTGACTTCAAATTCTCCTAGACATCATCACCAACATCAGAATCAGA-GATCGACTTC 394
| |||||||||||||||||| || |||||||||||||| |||||||| | | ||||||||
Sbjct 181 CTATTGACTTCAAATTCTCCCAGGCATCATCACCAACACCAGAATCA-ACGGTCGACTTC 239
Query 395 GGCTCAGAGGATGAGACGGCAATTGAAAATGCAAGAGGGAGACGAGAATCGTCCTTCCGA 454
||||||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||
Sbjct 240 GGCTCAGAGGATGAGACGGCAGTTAAAAATGCCAGAGGGCGACGAGAATCGTCCTTCCGA 299
Query 455 GACGGCGCGTAGCTTAGACTCGCCTTTTCCTCTTCAACAAGTCGACGGAGGTAAAAACCC 514
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 GACGGCGCGTAGCTTAGACTCGCCTTTTCCTCTTCAACAAGTCGACGGAGGTAAAATCCC 359
Query 515 TAAGCAGCATATTCGATCTAAGCCGTTGAAAGAGAACGGTCACCGTCTCGACACACCAAC 574
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAAGCAGCAGATACGATCTAAGCCGTTGAAAGAGAACGGTCACCGTCTCGACACACCAAC 419
Query 575 GACGGCTATGTTGCCGCCACCGTCTAGATCGCGGCTGAACCAACAGCGTTTACTCACTGC 634
|||||| ||||||||||| ||||||||||||||||||| |||||||||| | ||||| ||
Sbjct 420 GACGGCGATGTTGCCGCCTCCGTCTAGATCGCGGCTGAGCCAACAGCGTCTGCTCACCGC 479
Query 635 CTCCGCTGCGACTAGGCTTCTCCGATCAAGCGGGATCTCGTTATCATCTTCTACAGACGG 694
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 480 CTCCGCTGCGACTAGGCTTCTCCGATCAAGCGGGATCTCGTTATCTTCCTCCACAGACGG 539
Query 695 TGAAGAAG---ATAACAACAATAGAGAGATTTTCAAATCCAACGGCCCAGATCTGTTGCC 751
||| |||| | |||||||| |||||||||| ||||||||||||| | |||||||||||
Sbjct 540 TGACGAAGACAACAACAACAACAGAGAGATTTCCAAATCCAACGGCTCGGATCTGTTGCC 599
Query 752 AACAATTAGAACCCAAGCAAAGGC-CTTTAACACTCCCACCGCCTCACCACTTTCTCGAT 810
|||||| |||| ||||||||| || ||| |||| ||||||||| ||||| ||||||||||
Sbjct 600 AACAATCAGAAACCAAGCAAA-GCTCTTCAACAATCCCACCGCTTCACCTCTTTCTCGAT 658
Query 811 CCCTGAGTTCCGATGATGCGTCGATGTTTCGAGATGTTAGAGCTTCATTGTCGCTTAAAA 870
|||||||||| |||||| | || ||||||||||||| ||||||||||||||||||||||
Sbjct 659 CCCTGAGTTCTGATGATTCTTCCTTGTTTCGAGATGTAAGAGCTTCATTGTCGCTTAAAA 718
Query 871 ATGGTGTTGGTTTGTCATTGCCTCCGGTGGCTCCTAATTCGAAGATTCAAGCCGATACAA 930
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 719 ATGGTGTTGGTTTGTCATTGCCTCCGGTTGCTCCTAATTCGAAGATTCAAGCTGATACAA 778
Query 931 AGAAGCAGAAGAAAGCT-TTAGGACAACAAGCGGATGTGCATTCTCTGAAACTGCTCCAT 989
|||| |||||||||| | |||||||||||||| ||| | |||||| ||||||||||||||
Sbjct 779 AGAAACAGAAGAAAG-TGTTAGGACAACAAGCAGATATACATTCTTTGAAACTGCTCCAT 837
Query 990 AACCGTTACTTGCAATGGCGATTTGCAAATGCAAATGCTGAGGTCAAAACACAATCTCAG 1049
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 838 AACCGTTACTTGCAATGGCGATTTGCAAATGCAAATGCTGAGGTCAAAACACAATCCCAG 897
Query 1050 AAAGCACAAGCTGAGAGAATGTTTTATTCACTTGGTTTGAAAATGTCGGAGTTGTCTGAT 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAAGCACAAGCTGAGAGAATGTTTTATTCACTTGGTTTGAAAATGTCGGAGTTGTCTGAT 957
Query 1110 TCTGTACAGAGGAAACGCATAGAACTCCAACATTTACAGAGAGTTAAAGCTGTTACGGAG 1169
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 958 TCTGTACAGAGGAAACGCATAGAACTCCAACATTTACGGAGAGTTAAAGCTGTCACGGAG 1017
Query 1170 ATTGTAGAGTCACAAACTCCTTCTTTGGAGCAATGGGCTGTTCTTGAAGATGAATTCTCA 1229
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1018 ATTGTAGAGTCTCAAACTCCTTCTTTGGAGCAATGGTCTGTTCTTGAAGATGAATTCTCA 1077
Query 1230 ACTTCACTATTGGAAACAACTGAAGCTTTGTTGAATGCTTCATTGCGGTTGCCTCTCGAT 1289
| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1078 AATTCTCTATTGGAAACAACTGAAGCTTTATTGAATGCTTCATTGCGGTTGCCTCTCGAT 1137
Query 1290 TCAAAAATCAAGGTTGAGACTAAAGAGTTAGCAGAAGCACTTGTTGTCGCTTCAAAATCT 1349
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 1138 TCAAAAATCAAGGTTGAGACTAAAGAGTTAGCAGAAGCCCTCGTTGTTGCTTCAAAGTCT 1197
Query 1350 ATGGAAGGCATTGTGCAAAACATTGGAAATCTTGTGCCTAAGACACAAGAGATGGAGACT 1409
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1198 ATGGAAGGCATTGTGCAAAACATTGGAAACCTTGTACCTAAGACACAAGAGATGGAGACT 1257
Query 1410 TTGATGTCGGAATTAGCTAGAGTAAGCGGCATAGAGAAAGCATCAGTAGAAGATTGCAGA 1469
|||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1258 TTGATGTCGGAACTAGCAAGAGTAAGCAGCATAGAGAAAGCATCAATAGAAGATTGCAGA 1317
Query 1470 GTTGCACTGCTTAAGACACATTCATCACAGATGGAAGAATGCTATCTTAGAAGTCAGCTT 1529
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1318 GTTGCAATGCTTAAAACACATTCATCACAGATTGAAGAATGCTATCTTAGAAGTCAGCTT 1377
Query 1530 ATTCAACACCAGAAGAAGTGCCATCAGCAAGAGTGCACAACTTCTGTTTGA 1580
|| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATCCAGCACCAGAAGAAGTGCCATCAGCAAGAGTGCACAACTTCTGTTTGA 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65477131155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5