BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G44195.1

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935348 jgi|Araly1|935348|scaffold_403336.1                        195    5e-49


> Ahg935348 jgi|Araly1|935348|scaffold_403336.1
Length=598

 Score =  195 bits (105),  Expect = 5e-49
 Identities = 189/226 (84%), Gaps = 20/226 (9%)
 Strand=Plus/Plus

Query  281  TTCCTGGTGCGTTGTTTGATGATGATGATAAGAGACACTCTGCCAATGATTCTTGGCGCA  340
            |||||||||||||| ||  |||||||||||||| | ||| ||||||||||||||||||||
Sbjct  379  TTCCTGGTGCGTTG-TT--TGATGATGATAAGACAAACTTTGCCAATGATTCTTGGCGCA  435

Query  341  AATTCCACTCCGACCCTTTGCTTCTCATCAGGCAGAAAGAGCAGGA--AATCT-G-----  392
            ||||| ||||||||||||||||||||||||||||| ||||||||||  || || |     
Sbjct  436  AATTCAACTCCGACCCTTTGCTTCTCATCAGGCAGCAAGAGCAGGAGGAAGCTCGCAAAT  495

Query  393  --G-AAGT-T-CC-TTTCTTTATTTCTTTACTCCATTCATGTGTCCTGCTTGTGTTTCTT  446
              | |||| | || |||| || |||| |||||||||||||||||||||||||||| ||| 
Sbjct  496  CTGTAAGTGTTCCCTTTCATTCTTTCGTTACTCCATTCATGTGTCCTGCTTGTGTGTCTG  555

Query  447  CTGTAAACGGTTACGGTTTTAGATTGTATTGGATTTCGTTTCTGCT  492
             || |   |||||| ||||| ||| ||||||||||||| |||||||
Sbjct  556  -TG-AGT-GGTTACAGTTTTGGATAGTATTGGATTTCGATTCTGCT  598



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26533550232


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5