BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44210.2
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483545 jgi|Araly1|483545|fgenesh2_kg.4__2605__AT2G44210.2 2200 0.0
Ahg929096 jgi|Araly1|929096|scaffold_301553.1 255 6e-67
Ahg931330 jgi|Araly1|931330|scaffold_303787.1 124 2e-27
> Ahg483545 jgi|Araly1|483545|fgenesh2_kg.4__2605__AT2G44210.2
Length=1708
Score = 2200 bits (1191), Expect = 0.0
Identities = 1345/1417 (95%), Gaps = 20/1417 (1%)
Strand=Plus/Plus
Query 375 AAGTTTCATTCTTTTGCTGTTTTCTGGGAATAATTTTGAGTTTCTTAAACAGAGCCCAGA 434
||||||||||||||||||| ||| | | ||||||| || ||||||||||||||||
Sbjct 311 AAGTTTCATTCTTTTGCTGATTT-T-----T--TTTTGAG-TT-TTAAACAGAGCCCAGA 360
Query 435 TGGAGATATGATTGACTGTGTTCCAATCACTGACCAACCAGCTTTTGCTCATCCTCTGCT 494
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 TGGAGATATAATTGACTGTGTTCCAATCACTGACCAACCAGCTTTTTCTCATCCTCTGCT 420
Query 495 CATTAATCACACTGTCCAGATGTGGCCAAGTTTGAACCCAGAAAGTGTATTTAGTGAGAG 554
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 421 CATTAATCACACTGTCCAGATGTGGCCAAGTTTTAACCCAGAAAGTGTTTTTAGTGAGAG 480
Query 555 TAAAGTTTCATCAAAAACCAAGAATCAGCAGTCTAATGCTATACATCAGCTTTGGCATGT 614
|||||||||||||||||| |||||||||||||||| | ||||| | ||||||||||||||
Sbjct 481 TAAAGTTTCATCAAAAACTAAGAATCAGCAGTCTAGTTCTATAAAGCAGCTTTGGCATGT 540
Query 615 GAATGGGAAATGTCCAAAGAACACAATTCCCATCAGAAGAACGAGAAGACAAGATCTTTA 674
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 541 GAATGGGAAATGTCCAGTGAACACAATTCCCATCAGAAGAACGAGAAGGCAAGATCTTTA 600
Query 675 -CAGAGCGAGTTCCGTTGAGAATTACGGTATGAAGAATCAGAAGAGTATCCCTAAACCTA 733
| |||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 601 TC-GAGCGAATTCCGTCGAGAATTACGGTAGGAAGAATCAGAAAAGTATCCCTAAACCTA 659
Query 734 AATCTTCTGAGCCACCTAATGTCCTTACACAAAATGGTCATCAGCACGCGATAATGTATG 793
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 AATCTTCTGAGCCACCTAATGTACTTACACAAAATGGTCATCAGCACGCGATAATGTATG 719
Query 794 TCGAAGATGGGGTTTTCTACGGGGCTAAAGCGAAGATAAATGTATGGAAGCCGGATGTTG 853
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 720 TCGAAGATGGTATTTTCTACGGGGCTAAAGCGAAGATAAATGTATGGAAGCCTGATGTCG 779
Query 854 AAATGCCTAATGAGTTTAGCTTAGCTCAGATTTGGGTTTTAGGTGGAAATTTCAACTCTG 913
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 780 AAATGCCTAATGAGTTTAGCTTGGCTCAGATTTGGGTTTTGGGTGGAAATTTTAACTCTG 839
Query 914 ATCTTAATAGTATTGAAGCTGGCTGGCAGGTCAGCCCACAATTGTATGGTGATAATAGGA 973
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 840 ATCTTAATAGTATTGAAGCTGGTTGGCAGGTCAGCCCACAATTGTATGGTGATAACCGGA 899
Query 974 CCAGACTCTTCACTTATTGGACTAGTGATGCATACCAAGGCACAGGCTGCTATAATCTTC 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 CCAGACTCTTCACTTATTGGACTAGTGATGCATACCAAGGCACAGGCTGCTATAATCATC 959
Query 1034 TATGCTCAGGATTTGTTCAAATCAATAGAGAAATCGCAATGGGTGGATCAATCTCTCCTT 1093
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 960 TGTGCTCAGGATTTGTTCAAATTAATAGAGAAATCGCAATGGGTGGATCGATCTCTCCTT 1019
Query 1094 TATCAAACTATGGAAACTCTCAATATGACATCACCATACTCATCTGGAAGGATCCAAAAG 1153
|||| ||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1020 TATCGAACTACGGAAACTCTCAGTATGACATTACCATACTCATCTGGAAGGACCCAAAAG 1079
Query 1154 AAGGACATTGGTGGTTACAGTTTGGAGAGAAATACATAATAGGATACTGGCCAGCTTCAC 1213
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1080 AAGGACATTGGTGGTTACAATTTGGAGAGAAATACATAATCGGATACTGGCCAGCTTCAC 1139
Query 1214 TCTTCTCTTACTTATCAGAAAGTGCATCGATGATCGAATGGGGAGGCGAAGTGGTTAACT 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCTTCTCTTACTTATCAGAAAGTGCATCGATGATCGAATGGGGAGGCGAAGTGGTTAACT 1199
Query 1274 CGCAGTCCGAGGAAGGACAACACACAACCACTCAGATGGGAAGTGGGAGGTTTGCAGAGG 1333
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1200 CGCAGTCCGAGGAAGGACAACACACGACCACTCAGATGGGAAGTGGGAGGTTTGCAGAGG 1259
Query 1334 AAGGTTGGGGAAAAGCGAGTTACTTCAAGAACGTTCAAGTAGTTGATGGATCGAATGAAC 1393
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1260 AAGGTTGGGGAAAAGCAAGTTACTTCAAGAACGTTCAAGTAGTCGATGGATCGAATGAAC 1319
Query 1394 TGAGAAACCCGGAGAATCTTCAAGTGTTTACTGATCAAGAGAACTGTTACAATGTGAAAA 1453
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1320 TGAGAAACCCGGAAAATCTTCAAGTCTTTACTGATCAAGAGAACTGTTACAATGTGAAAA 1379
Query 1454 GTGGGAATGGAGGTTCTTGGGGAAGTTACTTCTACTATGGTGGTCCTGGTCGAAACCCTA 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GTGGGAATGGAGGTTCTTGGGGAAGTTACTTCTACTATGGTGGTCCTGGTCGAAACCCTA 1439
Query 1514 ATTGCCCTTAAAGATTTGGTCGACTTACTCACATTGCAGATCATTCCAAATCAATTGTAT 1573
||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1440 ATTGCCCTTAA-GATTTGGCCGACTTACTCATATTGCAGATCATTCCAAATCAATTGTAT 1498
Query 1574 AAAAAACatataatatatatatataCACATTCTTAAGTATATTATTAATTTCAGGTTTGA 1633
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1499 AAAAA-CATATAATATATATATA--CACATTCTTAAGTATATTATTAATTTCAGGTTTGA 1555
Query 1634 AGAGTGGTATATGGTATATTCAAATTCATCTGCAGAATTTGTTTGTTTGTGTGTTTGAGA 1693
|||||||| ||| |||||||||||||| | | ||||||||||||||||| |||||||||
Sbjct 1556 AGAGTGGTTTATTGTATATTCAAATTC-TGT--AGAATTTGTTTGTTTGTTTGTTTGAGA 1612
Query 1694 GTGTTTTCTCTGTTTCCATGGAGTGAAGAGAAGATAAATTTCTTTTAAAGAACATGGTCC 1753
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1613 GTGTTTTCTCTGTTTCCATGGAGTGAAGAGAAGATAAATTTCTTA-AAAGAACATGGTCC 1671
Query 1754 CATGTGTATACTGAAATCAAATGATCCCATTATTAAT 1790
|||||||||||||||||||||||||| ||||||||||
Sbjct 1672 CATGTGTATACTGAAATCAAATGATCACATTATTAAT 1708
Score = 361 bits (195), Expect = 1e-98
Identities = 292/333 (88%), Gaps = 30/333 (9%)
Strand=Plus/Plus
Query 14 TTTTTATGAAGGTTTTGCCAAAGTGTCATTAGTGCCCAGAATTAAACGCAATCCACTTCA 73
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 TTTTTATGAAGGTTTTGCCAAAGTGTCATTAGTGTCCAGAATTAAACGCAATCCACTTCA 60
Query 74 ATCCAAAATCCCATACTAAATTAAAACCAACACACAGGAAGAAAGAAGAAACCTCTCATC 133
|||||||| | || | || | | || ||| ||||| ||||||||||||
Sbjct 61 ATCCAAAA---C--AC---------A--AAGA-A-AGAAAG-AAGAA-AAACCTCTCATC 100
Query 134 TTCCCCTCTC-TTCTGTTGAAGAAAGCTTAAACCTTTCTGGGTTTCTTTTAACTAT-G-- 189
||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 101 TTCTCCTCTCTTTCTGTTAAAGAAAGCTTAAACCTTTCTGGGTTTCTTTAAACTATGGCT 160
Query 190 GC------GACAAGGGTTAGTTTCTTCTTAGCTCTGGTAATGACGGTGGTGATTCTTGCT 243
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 161 GCTAATTGGACAAGGGTTATTTTCTTCTTAGCTCTGGTAATGACGGTGGCGATTCTTGCT 220
Query 244 CCTTCTGTCGTCTCTGGAGAAAATGGGTTTTCCGATCTTAAAATCCGTACTCACTTGAAA 303
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 221 CCTTCTGTCGTCTCCGGCGAAAATGGTTTTTCCGATCTTAAAATCCGTACTCACTTGAAA 280
Query 304 CGACTCAACAAGCCAGCTCTCAAATCGATTAAG 336
|||||||||||||||||||||||||||||||||
Sbjct 281 CGACTCAACAAGCCAGCTCTCAAATCGATTAAG 313
> Ahg929096 jgi|Araly1|929096|scaffold_301553.1
Length=1306
Score = 255 bits (138), Expect = 6e-67
Identities = 478/639 (75%), Gaps = 35/639 (5%)
Strand=Plus/Plus
Query 763 CAAAATGGTCATCAGCACGCGATA-ATGTATGTCGAA-GATGGGGTTTTCTACGGGGCTA 820
|||||||||||||||||||| ||| | ||||| ||| || | | |||||| ||||
Sbjct 528 CAAAATGGTCATCAGCACGCCATAGCT-TATGTGGAAGGA-GATAAGTACTACGGAGCTA 585
Query 821 AAGCGAAGATAAATGTATGGAAGCCGGATG-TTGA-AATGC-CTAATGAGTTTAGCTTAG 877
| |||| | ||||| ||| |||| | | | | || | | ||||| || ||||| |
Sbjct 586 AGGCGACTTTGAATGTGTGGGAGCC-AAAGATACAGAA--CACAAATGAATTCAGCTT-G 641
Query 878 -CTCAGATTTGGGTTTTAGGTGG-AAATTTCAACTCTGATCTTAATAGTATTGAAGCTGG 935
| ||||| ||| |||| ||||| ||| || |||||||| || |||||||||||
Sbjct 642 TCGCAGATATGGCTTTTGGGTGGTTCCTTTGGAC-AAGATCTTAACAGCATTGAAGCTGG 700
Query 936 CTGGCAGGTCAGCCCACAAT-TGTATGGTGATAATAGGACCAGACTCTTCACTTATTGGA 994
||||||||| ||||| || | ||||| || |||| || |||||||||||||| ||||
Sbjct 701 CTGGCAGGTGAGCCC-GGATCTATATGGAGACAATAACACAAGACTCTTCACTTACTGGA 759
Query 995 CTAGTGATGCATACCAAGGC-ACAGGCTGCTATAATCTTCTATGCTCAGGATTTGTTCAA 1053
|||||||||| || ||| || || || ||||| || | ||| ||||| || ||| |||||
Sbjct 760 CTAGTGATGCCTATCAA-GCTACCGGTTGCTACAACCATCTCTGCTCGGGTTTTATTCAA 818
Query 1054 ATCAATAGAGAAATCGCAATGGGTG-GATCAATCTCTCCTTTATC-AAACTATGGAAACT 1111
||||| || || || |||||||| | | | || || || | || | ||| | || |
Sbjct 819 ATCAACAGTGACATAGCAATGGGAGCAAGC-ATTTCACCAGTCTCTGGA-TATCGTAATT 876
Query 1112 CTCAATATGACATCACCATACTCATCTGGAAGGATCCAAAAGAAGGACATTGGTGGTTAC 1171
| || || || || | || || ||||||||||||||||| || |||||||||||| | |
Sbjct 877 CCCAGTACGATATTAGTATTCTAATCTGGAAGGATCCAAAGGAGGGACATTGGTGGATGC 936
Query 1172 AGTTT-GGAGA-GAAATACATAATAGGATACTGGCCAGC-TTCACTCTTCTCTTACTTAT 1228
| ||| ||| | | || | | || ||||||||| | || |||||||| ||| ||
Sbjct 937 AATTTGGGA-ATG-GGTATGTTTTGGGGTACTGGCCATCATT-TCTCTTCTCCTACCTAA 993
Query 1229 CAGAAAGTGCATCGATGATCGAATGGGGAGGCGAAGTGGTTAACTCGCAGTCCGAGGAAG 1288
||||||||||||||||||||||||||||||| ||||| || ||||||||||| || |||
Sbjct 994 CAGAAAGTGCATCGATGATCGAATGGGGAGGAGAAGTTGTGAACTCGCAGTC--AG-AAG 1050
Query 1289 GACAACACACAACCACTCAGATGGGAAGTGGG-AGGTTTGCAGAGGAAGGTTGGGGAAAA 1347
| || ||||| || |||||||||||||| | || |||| ||||||| | |||
Sbjct 1051 GCCACCACACTTGGACACAGATGGGAAGTGGTCAC-TTCCCAGAAGAAGGTTTCAGCAAA 1109
Query 1348 GCGAGTTACTT-CAAGAACGTTCAAGTAGTTGATGGATC 1385
|| |||||||| | |||| ||||||| || ||||||||
Sbjct 1110 GCAAGTTACTTTCG-GAACATTCAAGTCGTAGATGGATC 1147
> Ahg931330 jgi|Araly1|931330|scaffold_303787.1
Length=388
Score = 124 bits (67), Expect = 2e-27
Identities = 86/95 (91%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 192 GACAAGGGTTAGTTTCTTCTTAGCTCTGGTAATGACGGTGGTGATTCTTGCTCCTTCTGT 251
||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||
Sbjct 35 GACAAGGGTTAGTTTCTTCTTAGCTCTGGTAATGACGGTGGCGATTCTTTCCCCTGCTGT 94
Query 252 CGTCTCTGG-AGAAAATGGGTTTTCCGATCTTAAA 285
|||||| || ||||| || |||||||||||||||
Sbjct 95 CGTCTCCGGCAGAAA-TGCTTTTTCCGATCTTAAA 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67914906835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5