BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44220.1
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935351 jgi|Araly1|935351|scaffold_403339.1 739 0.0
Ahg322090 jgi|Araly1|322090|fgenesh1_pm.C_scaffold_4002147 610 8e-174
Ahg359589 jgi|Araly1|359589|fgenesh1_pg.C_scaffold_436000001 313 3e-84
Ahg887561 jgi|Araly1|887561|Al_scaffold_0436_1 217 2e-55
Ahg949533 jgi|Araly1|949533|scaffold_801420.1 104 2e-21
> Ahg935351 jgi|Araly1|935351|scaffold_403339.1
Length=771
Score = 739 bits (400), Expect = 0.0
Identities = 474/509 (93%), Gaps = 7/509 (1%)
Strand=Plus/Plus
Query 4 ATGAGAATGACCGGTTTCATAGTAGCTATGATGATAG-CAGCGGCGATATTCACT-ACTT 61
||||||||||||||||||||||||||| ||||| | | |||| | ||||||| | | ||
Sbjct 24 ATGAGAATGACCGGTTTCATAGTAGCTGTGATGGT-GACAGCAGTGATATTC-GTCATTT 81
Query 62 GCGTTGATGGAAACAAGTTCTTTTATCACCGGGAAATTAAAGTACTTCGACATTTGAAAC 121
| |||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 82 GTGTTGATGGAAACGAGTTCTTTGATCACCGCGAAATTAAAGTACTTCGACATTTGAAAC 141
Query 122 GGTTCAACAAGCCTGCTCTTAAATCCATTAAGAGTGAAGATGGAGATGTAATAGATTGTG 181
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 GGTTCAACAAGCCTACTGTTAAATCCATTAAGAGTGAAGATGGAGATGTAATAGATTGTG 201
Query 182 TTCCTATCACTAATCAACCAGCTTTTGATCATCATTTACTTAAAAACCATACCATCCAGA 241
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 202 TTCCTATCACTAATCAACCGGCTTTTGATCATCCTTTACTTAAAAACCATACCATCCAGA 261
Query 242 TGAGACCGAGTTTCTACCCGGTAAGTGATTCTACGTACACCAAGAGGGAGGCAAAGGCTG 301
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 262 TGAGACCGAGTTTCTACCCGGTAAGTGATTCTACATACACCAAGAAAGAGGCAAAGGCTA 321
Query 302 TAACTCAGGTTTGGCACAAGGCTGGAGAGTGTCCCAAAAACACTGTTCCAATCAGAAGAA 361
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 322 TAACTCAGGTTTGGCACAAGACTGGAGAGTGTCCCAAAAACACTGTTCCAATTAGAAGAA 381
Query 362 CAAAGAAAGAAGATCTCTTGAGACCAAAATCCATCAGGAGTTTTGGGAGAAAGTCTCATC 421
|||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 382 CAAAGAAAGAAGATCTTTTAAGACCAAAATCCATCAGGAGTTTTGGGAGAAAGTCACATC 441
Query 422 AAAGCATTCCAAGAACTACAACCTTTGATCCAACATTAGGTCATCAGTACGCGCTA-ATG 480
||||||| ||| |||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 442 AAAGCATCCCACGAACTACAACCTTTGATCCAACATTAGGTCATCAGTACAC-CTTGATG 500
Query 481 GGTGTGAGAAATGGAAAATTTTATGGGAC 509
|||||||| |||||||||||| |||||||
Sbjct 501 GGTGTGAGGAATGGAAAATTT-ATGGGAC 528
Score = 344 bits (186), Expect = 9e-94
Identities = 224/241 (93%), Gaps = 7/241 (3%)
Strand=Plus/Plus
Query 844 GGAAACTGGTGGCTTAGAGTCAATGAAAAAGACGTTATTGGGTACTGGCCAGGCTCGTTG 903
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 531 GGAAACTGGTGGCTTAGGGTCAATGAAAAGGACATTATTGGGTACTGGCCAGGCTCGTTG 590
Query 904 TTCAATTCTCTAGGAAGAGAAGCTACGAGAGTTGAATGGGGAGGTGAAATCATTAACTCA 963
|||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 591 TTCAGTTCTCTAGGAAGAGAAGCTACCAGAGTTGAATGGGGAGGCGAAATCATTAACTCG 650
Query 964 AAGACCGGTGGGAGACACACTACCACAGATATGGGAAGTGGGCATTTTGCAGATGAAGGT 1023
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 651 AAGACCGGTGGGAGACACACAACCACAGATATGGGAAGTGGGCATTTTGCAGACGAAGGT 710
Query 1024 TTTAAGAAAGCAAGCTATTTCAG------GAA-TCTTAAGATAGTTGATGGAACCAATAC 1076
|||||||||||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 711 TTTAAGAAAGCAAGCTATGTCAGAATTCAGAAATCTTAAGATAGTTGATGGAACCAATAC 770
Query 1077 T 1077
|
Sbjct 771 T 771
> Ahg322090 jgi|Araly1|322090|fgenesh1_pm.C_scaffold_4002147
Length=1119
Score = 610 bits (330), Expect = 8e-174
Identities = 778/986 (79%), Gaps = 64/986 (6%)
Strand=Plus/Plus
Query 48 GATATTCACTACTTGCGTTGATGGAAACA-AGTTCTTTTATCACCGGGAAATTAAAGTAC 106
|||| || ||||||||| ||||||||| | |||||| | | ||||||||| |||||||||
Sbjct 48 GATAATCGCTACTTGCGCTGATGGAAA-AGAGTTCTCTCACCACCGGGAAGTTAAAGTAC 106
Query 107 TTCGACATTTGAAAC-GGTTCAACAAGCCTGCTCTTAAATCCATTAAGAGTGAAGATGGA 165
|| |||||| | | || |||||||| |||||||||||||||||||||||||| ||
Sbjct 107 AAAGATTTTTGAAGCAGCTT-AACAAGCCAGCTCTTAAATCCATTAAGAGTGAAGACGGC 165
Query 166 GATGTAATAGATTGTGTTCCTATCACTAATCAACCAGCTTTTGATCATCATTTACTTAAA 225
||| |||| || |||||||| || |||| ||||| ||||||||||||| ||| ||||||
Sbjct 166 GATATAATTGACTGTGTTCCAATAACTAGCCAACCCGCTTTTGATCATCCTTTGCTTAAA 225
Query 226 AACCATACCATCCAGATGAGACCGAG-TTTCTACCC-----GGTAA-GTGATTCTACGTA 278
|| || ||||| ||| | | ||| || ||| | ||| || || |||| ||||||||
Sbjct 226 AATCACACCATTCAGGTAAAACCAAGTTTTGT-CCCAGAAGGGGAAGGTGACTCTACGTA 284
Query 279 CACCAAGAGGGAGGCAAAGGCTGTAACTCAGGTTTGGCACAAGGCTGGAGAGTGTCCCA- 337
|| |||| | || ||||||| | ||||| || |||||||| | ||||||||| ||||
Sbjct 285 CATGAAGAAGAAGACAAAGGC--T-ACTCAAGTGTGGCACAAAGATGGAGAGTG-CCCAG 340
Query 338 AAAACACTGTTCCAATCAGAAGAACAAAGAAAGAAGATCTCTTGA-GACCAAAAT-CCAT 395
|||| || | || || ||||||||||| ||||||||| |||| | || |||||| || |
Sbjct 341 AAAAAACAATCCCGATAAGAAGAACAAAAAAAGAAGATATCTT-ACGAGCAAAATCCCTT 399
Query 396 CAGGAGTTTTGGGAGAAAGTCTCATCAA-AGCATTCCAAGAA-CTACAACCT-TTGATCC 452
| || || |||| |||| ||||||| | || ||| ||| |||| || | | |||
Sbjct 400 GA-AAGATTCGGGAAAAAGAATCATCAATA-CAGTCC-TGAAGATACATTCTCTAG-TCC 455
Query 453 AACATTA-GGTCATCAGTACGCGCTAATGGGTGTGAGAAATGGAAAATTTTATGGGACAG 511
|| |||| ||| |||||||| | |||||||||||||| ||||||||||| ||||||
Sbjct 456 AA-ATTATCACCATGAGTACGCGTTCATGGGTGTGAGAAACGGAAAATTTTACGGGACAA 514
Query 512 AAG-TTGCAATAAATCTGTGGAAACCATATGT-CCAAATTCCTAAAGAGTTTAGCTTGGC 569
||| | | |||||| | ||||||||| |||| || | ||| | ||||| |||||| |
Sbjct 515 AAGCCT-CGATAAATATCTGGAAACCAAATGTAGCAGA-TCCCAGCGAGTTCAGCTTGTC 572
Query 570 TCAGACTTGGGTTGTGTCCGGAAAT-GGCTCTAGTC-TAAACACCATTGAAGCTGGTTGG 627
||||||||| | || || || | | ||| |||||| | ||||| |||||||||||||||
Sbjct 573 ACAGACTTGGCTCGTATCTGG-AGTAGGCACTAGTCGT-AACACAATTGAAGCTGGTTGG 630
Query 628 CAGGTTTATCCA-GAACTATATGATGATAATAATCCTAGATTCTTTGTTTATTGGACGC- 685
|||||||||||| ||| | || | |||||||||||||||||| |||||||||||||| |
Sbjct 631 CAGGTTTATCCAGGAA-TGTACGGTGATAATAATCCTAGATTATTTGTTTATTGGAC-CA 688
Query 686 GTGATGGGTACCGAAAA-ACGGGATGCTACAACCTTCTCTGC-TCAGGTTTTGTTCAAAC 743
| ||||| |||| |||| || ||||||||||| || || ||| | ||||||||||| ||
Sbjct 689 GCGATGGATACC-AAAAGACAGGATGCTACAATCTCCTGTGCGGC-GGTTTTGTTCAGAC 746
Query 744 GAGTAATCGA-TACACCGTAGGTGGAT-CAATCACCACCATGTCACG-CTACCG-TGGAA 799
|| || | | ||| | |||||||||| | | || ||| ||||| | || || |||
Sbjct 747 GAACAA-CCAGTACTCTGTAGGTGGATCCTA-CAATACCGTGTCA-GAATA-CGACGGAG 802
Query 800 CTCAA-TATGATCTC-TCCGTACTTATATGGAAGGACCAAAAAACAGGAAACTGGTGGCT 857
||||| || | |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CTCAACTAAG-TCTCAACC-TACTTATATGGAAGGACCAAAAAACAGGAAACTGGTGGCT 860
Query 858 TA-GAGTCAATGAAAAAGACGTTATTGGGTACTGGCCAGGCTCGTTGTTCAATTCTCTAG 916
| || | ||||| || ||| |||| ||||||||||| ||||||||||||||||||||||
Sbjct 861 AAAGA-TAAATGACAATGACATTATCGGGTACTGGCCCGGCTCGTTGTTCAATTCTCTAG 919
Query 917 GAAGA-GAAGCTACGAGAGTTGAATGGGGAGGTGAAATCATTAACTCAAAGACCGGTGGG 975
|| || | ||||| | ||||||||||||||| |||||| || || |||| || || |
Sbjct 920 GA-GATGGAGCTATAAAAGTTGAATGGGGAGGCGAAATC-TTCACGCAAA--CCAGTAAG 975
Query 976 AGACACACTACCACAGATATGGGAAG 1001
| |||||| ||||| |||||||||||
Sbjct 976 ACACACACAACCACCGATATGGGAAG 1001
> Ahg359589 jgi|Araly1|359589|fgenesh1_pg.C_scaffold_436000001
Length=405
Score = 313 bits (169), Expect = 3e-84
Identities = 336/413 (81%), Gaps = 25/413 (6%)
Strand=Plus/Plus
Query 688 GATGGGTACCGAAAA-ACGGGATGCTACAACCTTCTCTGC-TCAGGTTTTGTTCAAACGA 745
||||| |||| |||| || ||||||||||| || || ||| | ||||||||||| ||||
Sbjct 4 GATGGATACC-AAAAGACAGGATGCTACAATCTCCTGTGCGGC-GGTTTTGTTCAGACGA 61
Query 746 GTAATCGA-TACACCGTAGGTGGAT-CAATCACCACCATGTCACG-CTACCG-TGGAACT 801
|| | | ||| | |||||||||| | | || ||| ||||| | || || ||| ||
Sbjct 62 ACAA-CCAGTACTCTGTAGGTGGATCCTA-CAATACCGTGTCA-GAATA-CGACGGAGCT 117
Query 802 CAA-TATGATCTC-TCCGTACTTATATGGAAGGACCAAAAAACAGGAAACTGGTGGCTTA 859
||| || | |||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 118 CAACTAAG-TCTCAACC-TACTTATATGGAAGGACCAAAAAACAGGAAACTGGTGGCTAA 175
Query 860 -GAGTCAATGAAAAAGACGTTATTGGGTACTGGCCAGGCTCGTTGTTCAATTCTCTAGGA 918
|| | ||||| || ||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 176 AGA-TAAATGACAATGACATTATCGGGTACTGGCCCGGCTCGTTGTTCAATTCTCTAGGA 234
Query 919 AGA-GAAGCTACGAGAGTTGAATGGGGAGGTGAAATCATTAACTCAAAGACCGGTGGGAG 977
|| | ||||| | ||||||||||||||| |||||| || || |||| || || ||
Sbjct 235 -GATGGAGCTATAAAAGTTGAATGGGGAGGCGAAATC-TTCACGCAAA--CCAGTAAGAC 290
Query 978 ACACACTACCACAGATATGGGAAGTGGGCATTTTGCAGATGAAGGTTTTAAGAAAGCAAG 1037
|||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 291 ACACACAACCACCGATATGGGAAGTGGGCATTTTGCAGAGGAAGGGTTTAAGAAAGCGAG 350
Query 1038 CTATTTCAGGAA-TCTTAAGATAGTTGATGGAACCAATACTCTTAGAGAACCA 1089
|||| | | ||| | ||| |||||||||||| || ||| |||| |||||||||
Sbjct 351 CTATGT-ACGAAATATTATGATAGTTGATGGGACAAATGCTCTGAGAGAACCA 402
> Ahg887561 jgi|Araly1|887561|Al_scaffold_0436_1
Length=534
Score = 217 bits (117), Expect = 2e-55
Identities = 311/398 (78%), Gaps = 39/398 (10%)
Strand=Plus/Plus
Query 59 CTTGCGT-TGATGGAAACA-AGTTCTTTTATCACCGGGAAATTAAAGTACTTCGA-CATT 115
||||||| | ||||||| | || || | ||||| ||||||| |||||| | | ||
Sbjct 53 CTTGCGTCT-ATGGAAA-AGAGCTCCCTGATCACTGGGAAATCGAAGTAC-AAAATCTTT 109
Query 116 TGAAACGGTTCAACAAGCCTGCTC-TTAAATCCATTAAGAGTGAAGATGGAGATGTAATA 174
|||| ||| ||||||| ||||| | |||||||||||||||||||||||||||| |||||
Sbjct 110 TGAAGCGGCTCAACAAACCTGC-CGTTAAATCCATTAAGAGTGAAGATGGAGACATAATA 168
Query 175 GATTGTGTTCCTATCACTAATCAACCAGCTTTTGATCATCATTTACTTAAAAACCATAC- 233
|||||||| || || |||| |||||||||||| ||||||| | | ||||||||||||||
Sbjct 169 GATTGTGTCCCAATTACTAGTCAACCAGCTTTGGATCATCCTCTGCTTAAAAACCATACA 228
Query 234 --C-A--TC--C---------A-GATGAGACCGAGTTTCTA-CCC----GGTAAGTGATT 271
| | || | | ||||||||||||||| || ||| ||||| | |||
Sbjct 229 ATCCAAGTCTGCTCTTCGTTTATGATGAGACCGAGTTT-TATCCCAAAAGGTAA-TCATT 286
Query 272 CTACGTACACCAAGAGGGAGGCAAAGGCTGTAACTCAGGTTTGGCACAAGGCTGGAGAGT 331
|||| ||||||||| | ||||||||| |||||||||| ||||||||| ||||||||
Sbjct 287 CTACAAACACCAAGAAAAATGCAAAGGCTATAACTCAGGTGTGGCACAAGAATGGAGAGT 346
Query 332 GTCCCAAAAACACTGTTCCAATCAGAAGAACAAAGAAAGAAGATCTCTTGA-GAC-CAAA 389
|||| ||||||||||| | |||||||||||||| |||||||| |||| | | | ||||
Sbjct 347 GTCCTGAAAACACTGTTGCTATCAGAAGAACAAACAAAGAAGAAATCTT-ACG-CTCAAA 404
Query 390 ATCCATC-AGGAGTTTTGGGAGAAAGTCTCATCAAAGC 426
|||||| || ||||| | | |||| |||||||||||
Sbjct 405 ATCCATTGAG-AGTTTCAGCAAAAAGACTCATCAAAGC 441
> Ahg949533 jgi|Araly1|949533|scaffold_801420.1
Length=1309
Score = 104 bits (56), Expect = 2e-21
Identities = 118/146 (81%), Gaps = 12/146 (8%)
Strand=Plus/Plus
Query 604 CTAAACACCATTGAAGCTGGTTGGCAGGTTTA-TCCAGAACTATATG-ATGATAATAATC 661
|||||||||||||||||||||||||||||| | ||| || ||||||| | |||||| |||
Sbjct 684 CTAAACACCATTGAAGCTGGTTGGCAGGTT-AGTCCTGAGCTATATGGA-GATAATTATC 741
Query 662 CTAGATTCTTTGTTTATTGGACG-CGTGATGGGTACCGAAA-AAC-GGGATGCTACAACC 718
| |||||||| ||||||||| | ||||| |||| || ||| ||| ||||||||
Sbjct 742 CAAGATTCTTCACATATTGGACGAC-TGATGCATACC-AAGCAACTGGG-TGCTACAAT- 797
Query 719 TT-CTCTGCTCAGGTTTTGTTCAAAC 743
|| |||||||| || || || |||||
Sbjct 798 TTACTCTGCTCTGGATTCGTACAAAC 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50855971278
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5