BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44240.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322090 jgi|Araly1|322090|fgenesh1_pm.C_scaffold_4002147 1485 0.0
Ahg359589 jgi|Araly1|359589|fgenesh1_pg.C_scaffold_436000001 577 9e-164
Ahg919880 jgi|Araly1|919880|scaffold_101161.1 58.4 2e-07
> Ahg322090 jgi|Araly1|322090|fgenesh1_pm.C_scaffold_4002147
Length=1119
Score = 1485 bits (804), Expect = 0.0
Identities = 939/1004 (94%), Gaps = 9/1004 (1%)
Strand=Plus/Plus
Query 141 ATGATGGGAGTGGCCGGTTTTGCGGTAGCTCTGATGGTAACTTCACTGTTAATCGCTACT 200
||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1 ATGATGGGAGTGGCCAGTTTTGCGGTAGCTCTGATGGTAACGTCACTGATAATCGCTACT 60
Query 201 TGCGCTGATGGAAAAGAGTTTTTTCATCACCGGGAAATTAAAGTACAAAGATTTTTGAAG 260
|||||||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||
Sbjct 61 TGCGCTGATGGAAAAGAGTTCTCTCACCACCGGGAAGTTAAAGTACAAAGATTTTTGAAG 120
Query 261 CAGCTTAACAAGCCAGCTCTTAAATCCATTAAGAGTGAAGACGGAGATATAATTGATTGT 320
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 121 CAGCTTAACAAGCCAGCTCTTAAATCCATTAAGAGTGAAGACGGCGATATAATTGACTGT 180
Query 321 GTTCTAATAACTAGCCAACCAGCTTTTGATCATCCTTTGCTTAAAAATCACACCATTCAG 380
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTCCAATAACTAGCCAACCCGCTTTTGATCATCCTTTGCTTAAAAATCACACCATTCAG 240
Query 381 GTAAAACCAAGTTTTATCCCGGAAGGGGAAGGTGACTCTACGTACACCAAGAAGGAGACA 440
||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||
Sbjct 241 GTAAAACCAAGTTTTGTCCCAGAAGGGGAAGGTGACTCTACGTACATGAAGAAGAAGACA 300
Query 441 AAAGCTACTCAAGTGTGGCAGAAATATGGAGAGTGCCCAGAAAACACTATCCCGATAAGA 500
|| ||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||
Sbjct 301 AAGGCTACTCAAGTGTGGCACAAAGATGGAGAGTGCCCAGAAAAAACAATCCCGATAAGA 360
Query 501 AGAACaaaaaaaGAAGAAATCTTACGAGCAAAATCCCTTGAAAGTTTCGGGAAAAAGAAT 560
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 AGAACAAAAAAAGAAGATATCTTACGAGCAAAATCCCTTGAAAGATTCGGGAAAAAGAAT 420
Query 561 CATCAATACATTCCTGAAGATACAT-CT--AGTCCAAATTATCACCATGAGTACGCGTTC 617
|||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 421 CATCAATACAGTCCTGAAGATACATTCTCTAGTCCAAATTATCACCATGAGTACGCGTTC 480
Query 618 ATGGGTGTGAGAAACGGAAAGTTTTACGGGACAAAAGCCTCGATAAATGTCTGGAAACCA 677
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 481 ATGGGTGTGAGAAACGGAAAATTTTACGGGACAAAAGCCTCGATAAATATCTGGAAACCA 540
Query 678 GATGTAGCA-ACTCCCAGCGAGTTCAGCTTGTCACAGACTTGGATCGTATCTGGAG-ATG 735
|||||||| | ||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 541 AATGTAGCAGA-TCCCAGCGAGTTCAGCTTGTCACAGACTTGGCTCGTATCTGGAGTA-G 598
Query 736 GCACTAGTCGTAATACTATTGAAGCTGGTTGGCAGGTTTATCCAGGAATGTACGGTAATA 795
||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 599 GCACTAGTCGTAACACAATTGAAGCTGGTTGGCAGGTTTATCCAGGAATGTACGGTGATA 658
Query 796 ATGATCCTAGATTATTTGTTTATTGGACCAGCGATGGATACCAAAAGACAGGATGCTATA 855
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 659 ATAATCCTAGATTATTTGTTTATTGGACCAGCGATGGATACCAAAAGACAGGATGCTACA 718
Query 856 ATCTCGTCTGCGGTGGTTTTGTTCAGACGACCAACCAATACACTGTAGGTGGATCCTACG 915
||||| | ||||| |||||||||||||||| |||||| ||| |||||||||||||||||
Sbjct 719 ATCTCCTGTGCGGCGGTTTTGTTCAGACGAACAACCAGTACTCTGTAGGTGGATCCTACA 778
Query 916 TTACCGCGTCACAATACGACGGAGCTCAACTA-GTTCTCAACCTACTTATATGGAAGGAC 974
||||| |||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 779 ATACCGTGTCAGAATACGACGGAGCTCAACTAAGT-CTCAACCTACTTATATGGAAGGAC 837
Query 975 CCAAAAACAGGAAACTGGTGGCTAAAGATTAATGACAACGATGTTATAGGGTACTGGCCT 1034
| ||||||||||||||||||||||||||| |||||||| || |||| |||||||||||
Sbjct 838 CAAAAAACAGGAAACTGGTGGCTAAAGATAAATGACAATGACATTATCGGGTACTGGCCC 897
Query 1035 GGCTCGTTGTTCAATTCTCTAGGAGATGGAGCTATAAAAGTTGAATGGGGTGGCGAAATC 1094
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 898 GGCTCGTTGTTCAATTCTCTAGGAGATGGAGCTATAAAAGTTGAATGGGGAGGCGAAATC 957
Query 1095 TTCGCGCCAACCAGTGATAGACACACAACCACCGATATGGGAAG 1138
||| ||| ||||||| | | ||||||||||||||||||||||||
Sbjct 958 TTCACGCAAACCAGTAAGACACACACAACCACCGATATGGGAAG 1001
Score = 165 bits (89), Expect = 9e-40
Identities = 110/120 (92%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 1231 GACTTTACTCC-TATGCTGATAATCGTAATTGTTACAGCGTTGTACCAGGAAATGCTGGA 1289
||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||
Sbjct 1001 GACTTTACTCCGT-TGCTGATAATCGTAATTGTTACAACGTTGTAGCAGGAAATGGTGGA 1059
Query 1290 ACTTCCTTTGGTACTCATTTCTTCTATGGTGGTCCTGGTCAGAACGTTAAATGCCCGTGA 1349
||| |||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1060 ACTCCCTTTGGTACTCATTTCTTCTATGGTGGTCCTGGTCAGAACGCTATGTGCCCTTGA 1119
> Ahg359589 jgi|Araly1|359589|fgenesh1_pg.C_scaffold_436000001
Length=405
Score = 577 bits (312), Expect = 9e-164
Identities = 373/403 (93%), Gaps = 2/403 (0%)
Strand=Plus/Plus
Query 825 AGCGATGGATACCAAAAGACAGGATGCTATAATCTCGTCTGCGGTGGTTTTGTTCAGACG 884
||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||
Sbjct 1 AGCGATGGATACCAAAAGACAGGATGCTACAATCTCCTGTGCGGCGGTTTTGTTCAGACG 60
Query 885 ACCAACCAATACACTGTAGGTGGATCCTACGTTACCGCGTCACAATACGACGGAGCTCAA 944
| |||||| ||| ||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 61 AACAACCAGTACTCTGTAGGTGGATCCTACAATACCGTGTCAGAATACGACGGAGCTCAA 120
Query 945 CT-AGTTCTCAACCTACTTATATGGAAGGACCCAAAAACAGGAAACTGGTGGCTAAAGAT 1003
|| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CTAAG-TCTCAACCTACTTATATGGAAGGACCAAAAAACAGGAAACTGGTGGCTAAAGAT 179
Query 1004 TAATGACAACGATGTTATAGGGTACTGGCCTGGCTCGTTGTTCAATTCTCTAGGAGATGG 1063
|||||||| || |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 AAATGACAATGACATTATCGGGTACTGGCCCGGCTCGTTGTTCAATTCTCTAGGAGATGG 239
Query 1064 AGCTATAAAAGTTGAATGGGGTGGCGAAATCTTCGCGCCAACCAGTGATAGACACACAAC 1123
||||||||||||||||||||| |||||||||||| ||| ||||||| | | |||||||||
Sbjct 240 AGCTATAAAAGTTGAATGGGGAGGCGAAATCTTCACGCAAACCAGTAAGACACACACAAC 299
Query 1124 CACCGATATGGGAAGTGGACATTTTGCAGAGGAAGGGATTAAGAAAGCGAGCTATGTAAA 1183
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CACCGATATGGGAAGTGGGCATTTTGCAGAGGAAGGGTTTAAGAAAGCGAGCTATGTACG 359
Query 1184 AAATATTATGATAGTTGATGGGACAAATGCTCTGAGAGAACCA 1226
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAATATTATGATAGTTGATGGGACAAATGCTCTGAGAGAACCA 402
> Ahg919880 jgi|Araly1|919880|scaffold_101161.1
Length=1448
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1131 ATGGGAAGTGGACATTTTGCAGAGGAAGGGATTA 1164
|||||||||||||||||||||||||||||| |||
Sbjct 1213 ATGGGAAGTGGACATTTTGCAGAGGAAGGGTTTA 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5