BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44250.1
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483548 jgi|Araly1|483548|fgenesh2_kg.4__2608__AT2G44250.1 2037 0.0
> Ahg483548 jgi|Araly1|483548|fgenesh2_kg.4__2608__AT2G44250.1
Length=1352
Score = 2037 bits (1103), Expect = 0.0
Identities = 1273/1355 (94%), Gaps = 11/1355 (1%)
Strand=Plus/Plus
Query 1 ATGATGCTTAATCAGACAGTGATCTTCTTCCTTCTTTGGGTGATCATAGCA-CTTGTAGT 59
||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||
Sbjct 1 ATGATGCTTAATCAGACAGTGATCTTCCTCCTTCTTTGGGTGATCATAG-ATCTTGTAGT 59
Query 60 CGAAATTACTTTGGCCGGAAAGATCACAGTTTCTGATATCCATGAGCAGAAAATCGAACA 119
|| ||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||
Sbjct 60 CGGAATTACTTTGGCCGGAAAGATCAAACTTTCTGATTTACATGAGCAGAAAATCGAACA 119
Query 120 ACGGTTGAACCAACTCAACAAACCCGCCGTTAAATCTATCCATAGTCCAGATGGAGATAT 179
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 ACGGTTGAAACAACTCAACAAACCCACCGTTAAATCTATCCATAGTCCAGATGGAGATAT 179
Query 180 AATCGATTGTGTATGGATCTATCACCAACCAGCTTTTGATCATCCTTTACTCAAAAACCA 239
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AATTGATTGTGTATGGATATATCACCAACCAGCTTTTGATCATCCTTTACTCAAAAACCA 239
Query 240 CACCATTCAGATGAGGCCGAAAAGTGACTCGACAAGGGACAAAACTGGAGGTAACAAGAC 299
||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 240 CACCATTCAGATGTGGCCGAAAAGTGACTCGATAAGGGACAAGACTGGAGGTAACAAGAC 299
Query 300 AGACATTATCCATCAATTGTGGCGCACGAAAGGTGAATGTCCTAAGAACACTATTCCCAT 359
||||||||| ||||||||||||||||| ||||||||||||||| || |||||||||| ||
Sbjct 300 AGACATTATACATCAATTGTGGCGCACAAAAGGTGAATGTCCTGAGGACACTATTCCTAT 359
Query 360 CAGAAGAAGAACAAGAGATGATCTTCTAAGATCAGATTCCATCAAAACTCATGGAAGAAA 419
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 360 CAGAAGAAGAACAAGAGATGATCTTTTAAGATCAGATTCCATCGAAACTCATGGAAGAAA 419
Query 420 GAACCCACCAACCATTTCTCCAACTACTTATCACCTCCCCGATGATCAGACAGAAGTTCA 479
||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 420 GAACCCACCAACCATTTTTCCAACTACTTATCACCTCCCCGATGATCAAAAAGAAGTTCA 479
Query 480 TGAGCATGCGAGTGTGTACCTGGACTATGGTGAATACCATGGCAGCAAGAGCCGTATAAG 539
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGAGCATGCGAGTGTGCACCTGGACTATGGTGAATACCATGGCAGCAAGAGCCGTATAAG 539
Query 540 TATATGGAGACCAGACG-TT--AATATGACCGAGTTTAGTTTGGCTCAAACATGGGTCGT 596
|||||||| |||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 540 TATATGGAAACCAGACGTTTCAAATACGACCGAGTTTAGTTTGGCTCAAACATGGGTCGT 599
Query 597 CGGTGGAGATTGGGACACTGTTTTGAACACTGTGGAGTCTGGTTGGCAGATCCTACATTC 656
| |||||||||||||| || |||||||||| ||||||||||||||||| |||||||||
Sbjct 600 CAATGGAGATTGGGACAATGGTTTGAACACTTTGGAGTCTGGTTGGCAGGTCCTACATTG 659
Query 657 TATGTACGGTGACAATAATACAAGACTTTTCGCCTTTTGGACGAGCGATTCATATGGAGA 716
||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||| |
Sbjct 660 TATGTACGGTGACAATAATACAAGATTTTTCACCTATTGGACGAGCAATTCATATGGAAA 719
Query 717 CAACAGCTGCTACAATCTTGACTGTCCAGGCTTTGTTCAAGTGAATAAAGATATTGCCCT 776
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 720 GAACAGCTGCTACAATCTTGACTGTCCAGGCTTTGTTCAAGTGAATAAAGATGTTGCCCT 779
Query 777 TGGTGCAGCCCTCAACACTATCTCGACCTACAATGGTAACCAATATGATTTCCTTCTAAC 836
||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 TGGTGCAGCTTTCAACAGTATCTCGACCTACAATGGTAAACAATATGATTTCCTTCTAAC 839
Query 837 TATTGAGAAGGAACAAGATACCGGACTTTGGTGGCTTAAGTTTGATAC-TCATCTAGTCG 895
||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||| |
Sbjct 840 TATTGAGAAGGAACAAGATACCGGACTTTGGTGGCTTAAGTTTGACACAT-ATCAAGTTG 898
Query 896 GATACTGGCCAAGCTTTCTAGTCCCGAAGCTAGCAGACTCAGCACGGATGATCGCTTGGG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GATACTGGCCAAGCTTTCTAGTCCCGAAGCTAGCAGACTCAGCACGGATGATCGCTTGGG 958
Query 956 GAGGTGAAATTGTGTATGATGCTAGTGGCCAAAATGAACATACGCTTACGCAAATGGGGA 1015
|||||||||||| | ||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 959 GAGGTGAAATTGCGCATGATGCTAGTGGCCAAAAGGAACACACGAGTACGCAAATGGGGA 1018
Query 1016 GTGGCCATTTCGCGGAAGAAGGGTTTAAGAAGGCGGCTTATATCAATAACATAGAGTACA 1075
|||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||
Sbjct 1019 GTGGCCATTTCGCGGAAGAAGGTTTTAAGAAGGCGGCTTACATCAATAGCATAGAGTACA 1078
Query 1076 TCGATAAATCTAATCATCCGATCAAACCCTTTCCTCAAAATCTTGAAGCT-TCTGTTACT 1134
|||||||| ||||| |||| |||||||||| ||||||||||||||||||| | ||||||
Sbjct 1079 TCGATAAAGCTAATTATCCAATCAAACCCTCTCCTCAAAATCTTGAAGCTATA-GTTACT 1137
Query 1135 CGGCCTGAATGCTATAACCTCAAGGTTGGCTCTAGCCGAAGATGGGGAACTTACATTTTC 1194
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 CGGCCTGAATGTTATAACCTCAAGGTTGGCTCTAGCCGAAGGTGGGGAACTTACATTTTC 1197
Query 1195 TATGGTGGACCTGGACGTAACCCTCAATGCCTATGAAAAGTGACATGATTTTTCGAAATT 1254
||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1198 TATGGCGGACCTGGACTTAACCCTCAATGCCTATGAAAAGTGACATGATTTTCCGAAATT 1257
Query 1255 TATTTAGAAAATGTTTGGGACAACCCTTGTGATTGAAC-TGAATAGCGTTCTAAAGATGT 1313
| ||||||||||||||||||||||| |||||||||||| | ||||||||||| |||||||
Sbjct 1258 TCTTTAGAAAATGTTTGGGACAACCTTTGTGATTGAACGT-AATAGCGTTCTTAAGATGT 1316
Query 1314 AAACTTTTTAAGACTAATAAATGGTTTTGCATTTG 1348
||||| || ||||||||||||||||||||||||||
Sbjct 1317 AAACTATTGAAGACTAATAAATGGTTTTGCATTTG 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50589110859
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5