BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G44250.1 Length=1352 Score E Sequences producing significant alignments: (Bits) Value Ahg483548 jgi|Araly1|483548|fgenesh2_kg.4__2608__AT2G44250.1 2037 0.0 > Ahg483548 jgi|Araly1|483548|fgenesh2_kg.4__2608__AT2G44250.1 Length=1352 Score = 2037 bits (1103), Expect = 0.0 Identities = 1273/1355 (94%), Gaps = 11/1355 (1%) Strand=Plus/Plus Query 1 ATGATGCTTAATCAGACAGTGATCTTCTTCCTTCTTTGGGTGATCATAGCA-CTTGTAGT 59 ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| Sbjct 1 ATGATGCTTAATCAGACAGTGATCTTCCTCCTTCTTTGGGTGATCATAG-ATCTTGTAGT 59 Query 60 CGAAATTACTTTGGCCGGAAAGATCACAGTTTCTGATATCCATGAGCAGAAAATCGAACA 119 || ||||||||||||||||||||||| | |||||||| | |||||||||||||||||||| Sbjct 60 CGGAATTACTTTGGCCGGAAAGATCAAACTTTCTGATTTACATGAGCAGAAAATCGAACA 119 Query 120 ACGGTTGAACCAACTCAACAAACCCGCCGTTAAATCTATCCATAGTCCAGATGGAGATAT 179 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 120 ACGGTTGAAACAACTCAACAAACCCACCGTTAAATCTATCCATAGTCCAGATGGAGATAT 179 Query 180 AATCGATTGTGTATGGATCTATCACCAACCAGCTTTTGATCATCCTTTACTCAAAAACCA 239 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 180 AATTGATTGTGTATGGATATATCACCAACCAGCTTTTGATCATCCTTTACTCAAAAACCA 239 Query 240 CACCATTCAGATGAGGCCGAAAAGTGACTCGACAAGGGACAAAACTGGAGGTAACAAGAC 299 ||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 240 CACCATTCAGATGTGGCCGAAAAGTGACTCGATAAGGGACAAGACTGGAGGTAACAAGAC 299 Query 300 AGACATTATCCATCAATTGTGGCGCACGAAAGGTGAATGTCCTAAGAACACTATTCCCAT 359 ||||||||| ||||||||||||||||| ||||||||||||||| || |||||||||| || Sbjct 300 AGACATTATACATCAATTGTGGCGCACAAAAGGTGAATGTCCTGAGGACACTATTCCTAT 359 Query 360 CAGAAGAAGAACAAGAGATGATCTTCTAAGATCAGATTCCATCAAAACTCATGGAAGAAA 419 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 360 CAGAAGAAGAACAAGAGATGATCTTTTAAGATCAGATTCCATCGAAACTCATGGAAGAAA 419 Query 420 GAACCCACCAACCATTTCTCCAACTACTTATCACCTCCCCGATGATCAGACAGAAGTTCA 479 ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| Sbjct 420 GAACCCACCAACCATTTTTCCAACTACTTATCACCTCCCCGATGATCAAAAAGAAGTTCA 479 Query 480 TGAGCATGCGAGTGTGTACCTGGACTATGGTGAATACCATGGCAGCAAGAGCCGTATAAG 539 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TGAGCATGCGAGTGTGCACCTGGACTATGGTGAATACCATGGCAGCAAGAGCCGTATAAG 539 Query 540 TATATGGAGACCAGACG-TT--AATATGACCGAGTTTAGTTTGGCTCAAACATGGGTCGT 596 |||||||| |||||||| || |||| ||||||||||||||||||||||||||||||||| Sbjct 540 TATATGGAAACCAGACGTTTCAAATACGACCGAGTTTAGTTTGGCTCAAACATGGGTCGT 599 Query 597 CGGTGGAGATTGGGACACTGTTTTGAACACTGTGGAGTCTGGTTGGCAGATCCTACATTC 656 | |||||||||||||| || |||||||||| ||||||||||||||||| ||||||||| Sbjct 600 CAATGGAGATTGGGACAATGGTTTGAACACTTTGGAGTCTGGTTGGCAGGTCCTACATTG 659 Query 657 TATGTACGGTGACAATAATACAAGACTTTTCGCCTTTTGGACGAGCGATTCATATGGAGA 716 ||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||| | Sbjct 660 TATGTACGGTGACAATAATACAAGATTTTTCACCTATTGGACGAGCAATTCATATGGAAA 719 Query 717 CAACAGCTGCTACAATCTTGACTGTCCAGGCTTTGTTCAAGTGAATAAAGATATTGCCCT 776 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 720 GAACAGCTGCTACAATCTTGACTGTCCAGGCTTTGTTCAAGTGAATAAAGATGTTGCCCT 779 Query 777 TGGTGCAGCCCTCAACACTATCTCGACCTACAATGGTAACCAATATGATTTCCTTCTAAC 836 ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 780 TGGTGCAGCTTTCAACAGTATCTCGACCTACAATGGTAAACAATATGATTTCCTTCTAAC 839 Query 837 TATTGAGAAGGAACAAGATACCGGACTTTGGTGGCTTAAGTTTGATAC-TCATCTAGTCG 895 ||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||| | Sbjct 840 TATTGAGAAGGAACAAGATACCGGACTTTGGTGGCTTAAGTTTGACACAT-ATCAAGTTG 898 Query 896 GATACTGGCCAAGCTTTCTAGTCCCGAAGCTAGCAGACTCAGCACGGATGATCGCTTGGG 955 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 GATACTGGCCAAGCTTTCTAGTCCCGAAGCTAGCAGACTCAGCACGGATGATCGCTTGGG 958 Query 956 GAGGTGAAATTGTGTATGATGCTAGTGGCCAAAATGAACATACGCTTACGCAAATGGGGA 1015 |||||||||||| | ||||||||||||||||||| ||||| ||| |||||||||||||| Sbjct 959 GAGGTGAAATTGCGCATGATGCTAGTGGCCAAAAGGAACACACGAGTACGCAAATGGGGA 1018 Query 1016 GTGGCCATTTCGCGGAAGAAGGGTTTAAGAAGGCGGCTTATATCAATAACATAGAGTACA 1075 |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| Sbjct 1019 GTGGCCATTTCGCGGAAGAAGGTTTTAAGAAGGCGGCTTACATCAATAGCATAGAGTACA 1078 Query 1076 TCGATAAATCTAATCATCCGATCAAACCCTTTCCTCAAAATCTTGAAGCT-TCTGTTACT 1134 |||||||| ||||| |||| |||||||||| ||||||||||||||||||| | |||||| Sbjct 1079 TCGATAAAGCTAATTATCCAATCAAACCCTCTCCTCAAAATCTTGAAGCTATA-GTTACT 1137 Query 1135 CGGCCTGAATGCTATAACCTCAAGGTTGGCTCTAGCCGAAGATGGGGAACTTACATTTTC 1194 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1138 CGGCCTGAATGTTATAACCTCAAGGTTGGCTCTAGCCGAAGGTGGGGAACTTACATTTTC 1197 Query 1195 TATGGTGGACCTGGACGTAACCCTCAATGCCTATGAAAAGTGACATGATTTTTCGAAATT 1254 ||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1198 TATGGCGGACCTGGACTTAACCCTCAATGCCTATGAAAAGTGACATGATTTTCCGAAATT 1257 Query 1255 TATTTAGAAAATGTTTGGGACAACCCTTGTGATTGAAC-TGAATAGCGTTCTAAAGATGT 1313 | ||||||||||||||||||||||| |||||||||||| | ||||||||||| ||||||| Sbjct 1258 TCTTTAGAAAATGTTTGGGACAACCTTTGTGATTGAACGT-AATAGCGTTCTTAAGATGT 1316 Query 1314 AAACTTTTTAAGACTAATAAATGGTTTTGCATTTG 1348 ||||| || |||||||||||||||||||||||||| Sbjct 1317 AAACTATTGAAGACTAATAAATGGTTTTGCATTTG 1351 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50589110859 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5