BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44260.2
Length=2030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483550 jgi|Araly1|483550|fgenesh2_kg.4__2610__AT2G44260.2 2294 0.0
> Ahg483550 jgi|Araly1|483550|fgenesh2_kg.4__2610__AT2G44260.2
Length=1829
Score = 2294 bits (1242), Expect = 0.0
Identities = 1430/1520 (94%), Gaps = 16/1520 (1%)
Strand=Plus/Plus
Query 455 GAGGACCAGACAATCTCGGAGCTACATTCTTTGAACCATCCTCAATCCCTTCCGGTTTCT 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 GAGGACCAGACAATCTCGGAGCTACATTCTTTGAACCATCCTCAATCCCTTCCGGTTTCT 374
Query 515 CCATCCTTGGCTACTACGCTCAACCAAACAACCGTAATCTTTTCGGTTGGGTACTCACAG 574
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 375 CCATCCTCGGCTACTACGCTCAACCAAACAACCGTAAACTTTTCGGTTGGGTACTCACAG 434
Query 575 CTAGAGATCTCTCAAGCAACACCTTAAAACCACCAGTAGATTACACCCTCGTAGGAAACA 634
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 435 CTAGAGATCTCTCAAGCAACACCTTAAAACCTCCAGTAGATTACACCCTCGTAGGAAACA 494
Query 635 CCGAGTCACTCAAAATTAAACAAGACGGAACCGGATACTTCTGGCAACCCGTTCCTCCTG 694
|||||||||||||||| |||||||||||||| || || |||||||| |||||||||||||
Sbjct 495 CCGAGTCACTCAAAATCAAACAAGACGGAACTGGGTATTTCTGGCAGCCCGTTCCTCCTG 554
Query 695 ATGGATATCAAGCCGTTGGCCTAATAGTCACAAACTACTCACAAAAACCACCTCTAGACA 754
||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||||
Sbjct 555 ATGGATATCAAGCCGTTGGTCTAATAGTCACAAACTCCTCACAAAAGCCATCTCTAGACA 614
Query 755 AACTACGCTGCATCCGATCAGATTTAACCGAACAATGTGAAGCTGATACATGGATATGGG 814
||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 615 AACTAAGCTGCGTTCGATCCGATTTAACCGAACAATGTGAAGCTGATACATGGATATGGG 674
Query 815 GCACAAACGGAGTCAACATCTCAAATCTAAAACCAACCACAAGAGGAACACAAGCTACAG 874
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 675 GAACAAACGGAGTCAACATCTCAAATCTAAGACCAACCACAAGAGGAACACAAGCTACAG 734
Query 875 GAGTCTATGTAGGTACATTTACATGGCAAACCCAAAA--C-TC-C-T-CGCCTCCATCAT 928
| |||| |||||||||||| || || ||||||||||| | || | | | |||||| | |
Sbjct 735 GTGTCTCTGTAGGTACATTCACTTGCCAAACCCAAAATTCTTCTCTTCCTCCTCCAGCTT 794
Query 929 TATCTTGCTTAAAGAACACGAAACTCGACTTCTCTACAATGCCAAATGGGTCCCAAATCG 988
|||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 795 TATCTTGCATAAAGAACACGAAATTGGACTTCTCTACAATGCCAAATGGGTCCCAAATCG 854
Query 989 AAGAATTGTTCCAAACTTTTTCTCCATGTATCTATTTCCATCCAGACGAAGAATATCTAC 1048
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 855 AAGAATTGTTCCAAACTTATTCTCCATGGATCTATTTCCATCCAGACGAAGAATATCTAC 914
Query 1049 CTTCCTCTGTCACTTGGTACTTCAACAACGGAGCATTACTATACAAGAAAGGCGAAGAAT 1108
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 CTTCCTCTGTCAATTGGTACTTCAACAACGGAGCATTACTATACAAGAAAGGCGAAGAAT 974
Query 1109 CGAAACCAATCCCTATCGAATCAAACGGTTCTAATCTTCCACAAGGAGGATCAAACGATG 1168
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 975 CGAAACCAATCCCTATCGAATCAAACGGCTCTAATCTTCCACAAGGCGGATCAAACGATG 1034
Query 1169 GATCATACTGGCTAGATCTTCCTATAGACAAAAATGGTAAAGAGAGAGTCAAAAAAGGAG 1228
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1035 GATCATACTGGCTAGATCTTCCAATAGACAAAAATGGTAAAGAGAGAGTCAAAAAAGGAG 1094
Query 1229 ACTTACAAAGCACAAAAGTGTACCTTCATATCAAACCAATGCTCGGAGCAACATTCACAG 1288
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1095 ACTTACAAAGCACAAAAGTGTATCTTCACATCAAACCAATGCTTGGAGCAACATTCACAG 1154
Query 1289 ATATATCAATCTGGATATTTTACCCTTTCAATGGACCAGCAAAAGCCAAGGTCAAATTCG 1348
| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1155 ACATATCAATCTGGATCTTTTACCCTTTCAATGGTCCAGCAAAAGCTAAAGTCAAATTCG 1214
Query 1349 TAAATCTACCGTTGGGTAGAATCGGAGAACACATTGGAGATTGGGAACACACGACGCTAC 1408
| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1215 TGAATCTACCATTGGGGAGAATCGGAGAACACATTGGAGATTGGGAACACACGACGTTAC 1274
Query 1409 GGATCAGTAATTTCACCGGAGAGCTTTGGAGAGTGTTCTTATCGCAGCATAGTGGTGGAA 1468
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1275 GGATCAGTAATTTCACCGGAGAGCTATGGAGAGTGTTCTTATCGCAGCATAGCGGTGGAG 1334
Query 1469 TTTGGATCGATGCTTGCGATTTGGAGTTCCAA-GACGGAGGA--AA-TAACAAGTTTGTG 1524
||||| |||| ||||||||||| ||||||||| || |||||| || |||||||||||||
Sbjct 1335 TTTGGGTCGACGCTTGCGATTTAGAGTTCCAAGGA-GGAGGAGGAAGTAACAAGTTTGTG 1393
Query 1525 GCGTACGCATCGCTACATGGACACGCGATGTATCCGAAACCTGGGTTGGTGTTGCAAGGA 1584
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1394 GCGTACGCTTCGCTTCATGGACACGCGATGTATCCGAAACCTGGATTGGTGTTGCAAGGA 1453
Query 1585 GACGATGGGGTTGGGATTAGGAATGATACGGGGAAAGGTAAGAAGGTGCTTGATACGGGG 1644
||||||||||||||||||||||| ||||||| ||| ||||| ||||| |||||||||||
Sbjct 1454 GACGATGGGGTTGGGATTAGGAACGATACGGCGAAGGGTAAAAAGGTAATTGATACGGGG 1513
Query 1645 TTAGGGTATGAGGTGATTGCGGCGGAGTATGACGGCGGAGGAGTGGTGGAGCCGCCGTGG 1704
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 TTAGGGTATGAGGTGATAGCGGCGGAGTATGACGGCGGAGGAGTGGTGGAGCCGCCGTGG 1573
Query 1705 GTTAAGTATTTCAGGAAGTGGGGGCCGAAGATTGATTATAATGTTGATGATGAAGTTAAG 1764
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1574 GTTAATTATTTCAGGAAGTGGGGACCGAAGATTGATTATAATGTTGATGATGAAGTTAGG 1633
Query 1765 AGTGTGGAGAGGATATTGCCTGGGCTTTTGAAAAAGGCTTTTGTTAAATTTGTGAAGAAG 1824
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1634 AGTGTTGAGAGGATATTGCCTGGGCTTTTGAAAAAGGCCTTTGTTAAATTTGTGAAGAAG 1693
Query 1825 ATTCCTGATGAAGTTTATGGTGAAGATGGGCCTACTGGGCCTAAACTCAAGAGTAATTGG 1884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 ATTCCTGATGAAGTTTATGGTGAAGATGGGCCTACTGGGCCTAAACTCAAGAGTAATTGG 1753
Query 1885 GCTGGTGATGAAAGTTGATGAAAT-GTTGGTTTTTCTTTTAGATTGTTTGTTTGGTTTGA 1943
|||||||| ||||||||||||| | ||| ||||||||||||||||||||| | | ||
Sbjct 1754 GCTGGTGACGAAAGTTGATGAATTTGTTTGTTTTTCTTTTAGATTGTTTGCCT--T--GA 1809
Query 1944 TTCTTTGTATATAAAATTCT 1963
|||||||| |||||||||||
Sbjct 1810 TTCTTTGTTTATAAAATTCT 1829
Score = 95.3 bits (51), Expect = 2e-18
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 363 TGATGGTTTTGCGAAAGGAACCATTGACTTAGGAGGTGGTCTCGAAGTTAGTCAAGTTTC 422
|||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||||
Sbjct 252 TGATGGTTTTGCGAAACGAACAATTGACTTGGGTGGTGGTCTCGAAGTTAGTCAAGTTTC 311
Query 423 GAC 425
|||
Sbjct 312 GAC 314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76332850980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5