BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44270.2
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483552 jgi|Araly1|483552|fgenesh2_kg.4__2612__AT2G44270.1 1544 0.0
Ahg476769 jgi|Araly1|476769|fgenesh2_kg.2__1899__AT1G76170.1 1105 0.0
Ahg888289 jgi|Araly1|888289|Al_scaffold_0007_275 350 2e-95
> Ahg483552 jgi|Araly1|483552|fgenesh2_kg.4__2612__AT2G44270.1
Length=1165
Score = 1544 bits (836), Expect = 0.0
Identities = 1045/1136 (92%), Gaps = 53/1136 (5%)
Strand=Plus/Plus
Query 99 TCCGCATGAGCTCCGGTGAAAAATGGAGGCCAAGAACAAGAAAGCAGTAGCCTCCCGTCT 158
||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||
Sbjct 1 TCCGCATGAGCTCCGGTGAAAAATGGAGGCCAAGAGCAAGAAAGCAGGAGCCTCTCGTCT 60
Query 159 CTGCTGCTTATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAGCA 218
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 61 CTGCTGCTTATGCAACCTGAGACGTCCCGTTCTCAAAAGACCTAAAACCCTTCAACAG-A 119
Query 219 GAAGCTTGGAACACATTTCTATACTGTTAGTGTTAGAGAGTGCTTTTATGAGGTTTTTGA 278
| || | | | | || | || | || || | | |||| |||| |
Sbjct 120 TATGCA-G-AG-AG-TG-CT-T-CT---A-TG--AG-G--T--TTTT--GAGG------A 153
Query 279 GGAGGAGATTCATCAAGTCATTGTTCAGAATCGTTTATTCAAATCTGGTGAACGTGTTGC 338
|||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 154 GGAG-A--TTCATCAAGTCATTGTTCAGAATCGTTTATTCAAATCCGGTGAACGTGTTGC 210
Query 339 TATAGGTGCCTCTGGTGGAAAAGATTCTACTGTTCTGGCATATGTGTTATCAGAACTAAA 398
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 211 TATAGGTGCCTCTGGTGGAAAAGATTCTACCGTTCTGGCATATGTGTTATCAGAACTAAA 270
Query 399 CAGACGCCACAATTATGGGCTAGACCTCTTTCTCTTGTCCATAGATGAAGGGATTACGGG 458
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 CAGACGCCACAATTACGGGCTAGACCTCTTTCTCTTGTCCATAGATGAAGGGATTACGGG 330
Query 459 TTATCGTGATGATTCTCTTGAGACTGTTAAACGGAACGAAGTCCAATATGGTTTGCCTCT 518
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 331 TTATCGTGATGATTCTCTTGAGACTGTGAAACGGAACGAAGTCCAATATGGTTTGCCTCT 390
Query 519 T-AAGATTGTTTCATATAAAGATCTGTATGGATGGACAATGGATGAGATTGTGAAAATGA 577
|| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 391 CCAA-ATTGTTTCATACAAAGATCTGTATGGATGGACAATGGACGAGATTGTGAAAATGA 449
Query 578 TTGGTTTGAAGAACAATTGCACCTTTTGTGGTGTATTCCGTCGACAGGCACTTGACCGAG 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 450 TTGGTTTGAAGAACAATTGCACCTTTTGTGGTGTATTCCGTCGACAGGCACTTGATCGAG 509
Query 638 GAGCTGCGTTATTGAAAGTAGAGAAGCTAGTCACTGGACATAATGCAGATGATATAGCAG 697
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 510 GAGCTGCCTTATTGAAAGTAGATAAGCTAGTCACTGGACATAATGCTGATGATATAGCAG 569
Query 698 AAACCGTTCTCTTGAACATATTGCGAGGGGATATTGCTAGATTAAGTAGGTGCACATCGA 757
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 570 AAACCGTTCTCTTGAACATATTGCGAGGGGATATTGCTAGATTAAGTCGGTGCACATCGA 629
Query 758 TTACTACTGGTGAAGATGGTCCCATTCCAAGATGTAAACCTTTCAACT-T---TACG--- 810
|||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 630 TTACTACTGGTGAAGATGGTCCCATTCCAAGATGTAAACCTTTCAAGTATACGTACGAAA 689
Query 811 ------T----ATG----CTTATTTCAAGAAGCTGGATTACTTCTCCACTGAATGCATTT 856
| ||| |||||||||||||||| |||||||||||||| |||||||| |
Sbjct 690 AGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTCTCCACCGAATGCATAT 749
Query 857 ACTCTCCTAATGCATATCGTGGGTTTGCCCGTGAGTTCATCAAAGATTTGGAAAGAATAA 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 ACTCTCCTAATGCATATCGTGGGTTTGCCCGTGAGTTCATCAAAGATTTGGAAAGAATAA 809
Query 917 GGCCAAGGGCGATTCTGGACATCATAAAGTCTGGTGAAGATTTTAGAATTGCAACAACCA 976
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 810 GGCCAAGGGCGATTCTGGACATCATAAAATCTGGTGAAGATTTTAGAATTGCGACAACCA 869
Query 977 CAAAGATGCCTGAGCAAGGGACGTGTGAGCGATGCGGGTATATTTCTAGCCAGAAATGGT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 CAAAGATGCCTGAGCAAGGGACGTGTGAGCGATGCGGGTATATTTCTAGCCAGAAATGGT 929
Query 1037 GTAAAGCTTGTGTTTTGCTGGAAGGACTGAACCGTGGTTTGCCTAAGATGGGTATTGGAA 1096
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 GCAAAGCTTGTGTTTTGTTGGAAGGACTGAACCGTGGTTTGCCTAAGATGGGTATTGGAA 989
Query 1097 GACCTCGAGGCGTAAATGGTGATCATAATAAGGAAACAAAGAAGCCTGGATCTGTAGCAA 1156
|||| |||||| ||||| | || ||||| |||||||||||||||||||||| ||| ||||
Sbjct 990 GACCGCGAGGCTTAAATAGCGACCATAACAAGGAAACAAAGAAGCCTGGATATGTTGCAA 1049
Query 1157 AATCTATAGAGAGCAAACAATGTGGATCTCTGGATTTCTAAAATTTTGAGAAAAAA 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 AATCTATAGAGAGCAAACAATGTGGATCTCTGGATTTCTAAAATTTTGAGAAAAAA 1105
> Ahg476769 jgi|Araly1|476769|fgenesh2_kg.2__1899__AT1G76170.1
Length=1071
Score = 1105 bits (598), Expect = 0.0
Identities = 853/971 (88%), Gaps = 37/971 (4%)
Strand=Plus/Plus
Query 254 GAGAGTGCTTT-TATGAGGTTTTTGAGGAGGAGATTCATCAAGTCATTGTTCAGAATCGT 312
||||||| ||| ||||||||||||||||| |||||||| || ||||||||| |||||||
Sbjct 38 GAGAGTG-TTTCTATGAGGTTTTTGAGGAAGAGATTCACCATGTCATTGTTGGGAATCGT 96
Query 313 TTATTCAAATCTGGTGAACGTGTTGCTATAGGTGCCTCTGGTGGAAAAGATTCTACTGTT 372
||||| || || ||||| || |||||||||||||| || |||||||||||||| || ||
Sbjct 97 TTATTTAAGTCCGGTGAGCGAGTTGCTATAGGTGCTTCCGGTGGAAAAGATTCGACAGTG 156
Query 373 CTGGCATATGTGTTATCAGAACTAAACAGACGCCACAATTATGGGCTAGACCTCTTTCTC 432
||||||||||| |||||||||||||| ||||| |||||||| ||||| || || |||||
Sbjct 157 CTGGCATATGTATTATCAGAACTAAATAGACGTCACAATTACGGGCTGGATCTTTTTCTT 216
Query 433 TTGTCCATAGATGAAGGGATTACGGGTTATCGTGATGATTCTCTTGAGACTGTTAAACGG 492
||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 217 TTGTCTATTGATGAAGGGATAACGGGTTATCGTGATGATTCTCTCGAGACTGTTAAAAGG 276
Query 493 AACGAAGTCCAATATGGTTTGCCTCTTAAGATTGTTTCATATAAAGATCTGTATGGATGG 552
||||| || |||||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 277 AACGAGGTTCAATATGGGTTGCCTCTTCAGATTGTTTCATACAAAGATCTGTATGGATGG 336
Query 553 ACAATGGATGAGATTGTGAAAATGATTGGTTTGAAGAACAATTGCACCTTTTGTGGTGTA 612
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 337 ACAATGGACGAGATTGTGAAGATGATCGGTTTGAAGAACAATTGCACCTTTTGTGGTGTA 396
Query 613 TTCCGTCGACAGGCACTTGACCGAGGAGCTGCGTTATTGAAAGTAGAGAAGCTAGTCACT 672
|| ||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 397 TTTCGTAGACAGGCACTTGATCGAGGAGCTGCATTATTGAAAGTAGATAAGCTAGTCACT 456
Query 673 GGACATAATGCAGATGATATAGCAGAAACCGTTCTCTTGAACATATTGCGAGGGGATATT 732
||||||||||||||||||||||| ||||| |||||||| |||||| |||||||||||||
Sbjct 457 GGACATAATGCAGATGATATAGCGGAAACAGTTCTCTTAAACATACTGCGAGGGGATATC 516
Query 733 GCTAGATTAAGTAGGTGCACATCGATTACTACTGGTGAAGATGGTCCCATTCCAAGATGT 792
|||||||| |||||||||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct 517 GCTAGATTGAGTAGGTGCACATCAATCACTACTGGCGAAGATGGTCCAATTCCAAGATGT 576
Query 793 AAACCTTTCAACT-T---TA---------------C--GTATGCTTATTTCAAGAAGCTG 831
||||||||||| | | || | ||||||||||||||||||||||
Sbjct 577 AAACCTTTCAAATATACATATGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTG 636
Query 832 GATTACTTCTCCACTGAATGCATTTACTCTCCTAATGCATATCGTGGGTTTGCCCGTGAG 891
|| ||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 637 GACTACTTCTCCACCGAATGCATATACTCTCCTAATGCTTATCGTGGGTTTGCTCGTGAG 696
Query 892 TTCATCAAAGATTTGGAAAGAATAAGGCCAAGGGCGATTCTGGACATCAT-AAAGTCTGG 950
|||||||||||||||||| || ||||||||||||| |||||||| ||||| ||| |||||
Sbjct 697 TTCATCAAAGATTTGGAACGACTAAGGCCAAGGGCTATTCTGGATATCATCAAA-TCTGG 755
Query 951 TGAAGATTTTAGAATTGCAACAACCAC-AAAGATGCCTGAGCAAGGGACGTGTGAGCGAT 1009
|||||| || |||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 756 TGAAGACTTCAGAATTGCGACAACCACGAAA-ATGCCTGAGCAAGGGACGTGTGAGCGAT 814
Query 1010 GCGGGTATATTTCTAGCCAGAAATGGTGTAAAGCTTGTGTTTTGCTGGAAGGACTGAACC 1069
| |||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||||||
Sbjct 815 GTGGGTATATTTCTAGCCAGAAATGGTGCAAAGCTTGTGTTTTGTTGGAGGGATTGAACC 874
Query 1070 GTGGTTTGCCTAAGATGGGTATTGGAAGACCTCGAGGCGTAAATGGTGATCATAATAAGG 1129
||||||| ||||||||||| ||||||||||| ||||| || || || || | ||||
Sbjct 875 GTGGTTTACCTAAGATGGGCATTGGAAGACCACGAGG---AAGCGGAAATGATCAGAAGG 931
Query 1130 AAACAAAGAAGCCT-GGATCTG-TAGCAAAATCTATAGAGAGCAAACAATGTGGATCTCT 1187
| |||||| || | || ||| | |||||||||||||||||||||||||||||||||||
Sbjct 932 ACACAAAG--GC-TAGG-TCTACT-GCAAAATCTATAGAGAGCAAACAATGTGGATCTCT 986
Query 1188 GGATTTCTAAA 1198
|||||||||||
Sbjct 987 GGATTTCTAAA 997
> Ahg888289 jgi|Araly1|888289|Al_scaffold_0007_275
Length=546
Score = 350 bits (189), Expect = 2e-95
Identities = 275/312 (88%), Gaps = 23/312 (7%)
Strand=Plus/Plus
Query 500 TCCAATATGGTTTGCCTCTTAAGATTGTTTCATATAAAGATCTGTATGGATGGACAATGG 559
|||| ||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||
Sbjct 245 TCCAGTATGGTTTGCCTCGTCAGATTGTTTCATACAAAGATATGTATGGATGGACAATGG 304
Query 560 ATGAGATTGTGAAAATGATTGGTTTGAAGAACAATTGCACC-TTTTGTGGTGTATTCCGT 618
| || |||||||||||||| |||| |||||||||||||||| ||||||||||||||||||
Sbjct 305 ACGACATTGTGAAAATGATCGGTTCGAAGAACAATTGCACCTTTTTGTGGTGTATTCCGT 364
Query 619 CGACAGGCACTTGACCGAGGAGCTGCGTTATTGAAAGTAGAGAAGCTAGTCACTGGACAT 678
| | | | | ||||||||||||||||| ||||||||| ||||||||
Sbjct 365 ---------C-T-A-C----A---GCGTTATTGAAAGTAGATAAGCTAGTCGCTGGACAT 405
Query 679 AATGCAGATGATATAGCAGAAACCGTTCTCTTGAACATATTGCGAGGGGATATTGCTAGA 738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 AATGCAGATGATATAGCAGAAACCGTTCTCTTGAACATATTGCGAGGGGATATTGCT--- 462
Query 739 TTAAGTAGGTGCACATCGATTACTACTGGTGAAGATGGTCCCATTCCAAGATGTAAACCT 798
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 TTAAGTCGGTGCACATCGATTACTACTGGTGAAGATGGTCCCATTCCAAGATGTAAACCT 522
Query 799 TTCAACTTTACG 810
||||| | ||||
Sbjct 523 TTCAAGTATACG 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52869260060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5